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Items: 1 to 50 of 106

1.

Species delimitation in endangered groundwater salamanders: Implications for aquifer management and biodiversity conservation.

Devitt TJ, Wright AM, Cannatella DC, Hillis DM.

Proc Natl Acad Sci U S A. 2019 Feb 12;116(7):2624-2633. doi: 10.1073/pnas.1815014116. Epub 2019 Jan 14.

PMID:
30642970
2.

Species groups distributed across elevational gradients reveal convergent and continuous genetic adaptation to high elevations.

Sun YB, Fu TT, Jin JQ, Murphy RW, Hillis DM, Zhang YP, Che J.

Proc Natl Acad Sci U S A. 2018 Nov 6;115(45):E10634-E10641. doi: 10.1073/pnas.1813593115. Epub 2018 Oct 22.

PMID:
30348757
3.

Comparative genomic investigation of high-elevation adaptation in ectothermic snakes.

Li JT, Gao YD, Xie L, Deng C, Shi P, Guan ML, Huang S, Ren JL, Wu DD, Ding L, Huang ZY, Nie H, Humphreys DP, Hillis DM, Wang WZ, Zhang YP.

Proc Natl Acad Sci U S A. 2018 Aug 14;115(33):8406-8411. doi: 10.1073/pnas.1805348115. Epub 2018 Jul 31.

4.

Phylogenomics reveals rapid, simultaneous diversification of three major clades of Gondwanan frogs at the Cretaceous-Paleogene boundary.

Feng YJ, Blackburn DC, Liang D, Hillis DM, Wake DB, Cannatella DC, Zhang P.

Proc Natl Acad Sci U S A. 2017 Jul 18;114(29):E5864-E5870. doi: 10.1073/pnas.1704632114. Epub 2017 Jul 3.

5.

A Mitochondrial Genome of Rhyparochromidae (Hemiptera: Heteroptera) and a Comparative Analysis of Related Mitochondrial Genomes.

Li T, Yang J, Li Y, Cui Y, Xie Q, Bu W, Hillis DM.

Sci Rep. 2016 Oct 19;6:35175. doi: 10.1038/srep35175.

6.

Spatiotemporal Diversification of the True Frogs (Genus Rana): A Historical Framework for a Widely Studied Group of Model Organisms.

Yuan ZY, Zhou WW, Chen X, Poyarkov NA Jr, Chen HM, Jang-Liaw NH, Chou WH, Matzke NJ, Iizuka K, Min MS, Kuzmin SL, Zhang YP, Cannatella DC, Hillis DM, Che J.

Syst Biol. 2016 Sep;65(5):824-42. doi: 10.1093/sysbio/syw055. Epub 2016 Jun 10.

PMID:
27288482
7.

Complex Homology and the Evolution of Nervous Systems.

Liebeskind BJ, Hillis DM, Zakon HH, Hofmann HA.

Trends Ecol Evol. 2016 Feb;31(2):127-135. doi: 10.1016/j.tree.2015.12.005. Epub 2015 Dec 30. Review.

8.

Modeling Character Change Heterogeneity in Phylogenetic Analyses of Morphology through the Use of Priors.

Wright AM, Lloyd GT, Hillis DM.

Syst Biol. 2016 Jul;65(4):602-11. doi: 10.1093/sysbio/syv122. Epub 2015 Dec 28.

PMID:
26715586
9.

Which came first: The lizard or the egg? Robustness in phylogenetic reconstruction of ancestral states.

Wright AM, Lyons KM, Brandley MC, Hillis DM.

J Exp Zool B Mol Dev Evol. 2015 Sep;324(6):504-16. doi: 10.1002/jez.b.22642. Epub 2015 Jul 30.

PMID:
26227660
10.

How do SNP ascertainment schemes and population demographics affect inferences about population history?

McTavish EJ, Hillis DM.

BMC Genomics. 2015 Apr 3;16:266. doi: 10.1186/s12864-015-1469-5.

11.

Whole-genome sequence of the Tibetan frog Nanorana parkeri and the comparative evolution of tetrapod genomes.

Sun YB, Xiong ZJ, Xiang XY, Liu SP, Zhou WW, Tu XL, Zhong L, Wang L, Wu DD, Zhang BL, Zhu CL, Yang MM, Chen HM, Li F, Zhou L, Feng SH, Huang C, Zhang GJ, Irwin D, Hillis DM, Murphy RW, Yang HM, Che J, Wang J, Zhang YP.

Proc Natl Acad Sci U S A. 2015 Mar 17;112(11):E1257-62. doi: 10.1073/pnas.1501764112. Epub 2015 Mar 2.

12.

Convergence of ion channel genome content in early animal evolution.

Liebeskind BJ, Hillis DM, Zakon HH.

Proc Natl Acad Sci U S A. 2015 Feb 24;112(8):E846-51. doi: 10.1073/pnas.1501195112. Epub 2015 Feb 9.

13.

Bayesian analysis using a simple likelihood model outperforms parsimony for estimation of phylogeny from discrete morphological data.

Wright AM, Hillis DM.

PLoS One. 2014 Oct 3;9(10):e109210. doi: 10.1371/journal.pone.0109210. eCollection 2014.

14.

Long-branch attraction and the phylogeny of true water bugs (Hemiptera: Nepomorpha) as estimated from mitochondrial genomes.

Li T, Hua J, Wright AM, Cui Y, Xie Q, Bu W, Hillis DM.

BMC Evol Biol. 2014 May 7;14:99. doi: 10.1186/1471-2148-14-99.

15.

A Genomic Approach for Distinguishing between Recent and Ancient Admixture as Applied to Cattle.

McTavish EJ, Hillis DM.

J Hered. 2014 Jul-Aug;105(4):445-456. Epub 2014 Feb 7.

16.

Independent acquisition of sodium selectivity in bacterial and animal sodium channels.

Liebeskind BJ, Hillis DM, Zakon HH.

Curr Biol. 2013 Nov 4;23(21):R948-9. doi: 10.1016/j.cub.2013.09.025. No abstract available.

17.

Targeted enrichment: maximizing orthologous gene comparisons across deep evolutionary time.

Hedtke SM, Morgan MJ, Cannatella DC, Hillis DM.

PLoS One. 2013 Jul 2;8(7):e67908. doi: 10.1371/journal.pone.0067908. Print 2013.

18.

Recent host-shifts in ranaviruses: signatures of positive selection in the viral genome.

Abrams AJ, Cannatella DC, Hillis DM, Sawyer SL.

J Gen Virol. 2013 Sep;94(Pt 9):2082-93. doi: 10.1099/vir.0.052837-0. Epub 2013 Jun 19.

19.

Efficient sequencing of Anuran mtDNAs and a mitogenomic exploration of the phylogeny and evolution of frogs.

Zhang P, Liang D, Mao RL, Hillis DM, Wake DB, Cannatella DC.

Mol Biol Evol. 2013 Aug;30(8):1899-915. doi: 10.1093/molbev/mst091. Epub 2013 May 11.

PMID:
23666244
20.

New World cattle show ancestry from multiple independent domestication events.

McTavish EJ, Decker JE, Schnabel RD, Taylor JF, Hillis DM.

Proc Natl Acad Sci U S A. 2013 Apr 9;110(15):E1398-406. doi: 10.1073/pnas.1303367110. Epub 2013 Mar 25.

21.

Diversification of rhacophorid frogs provides evidence for accelerated faunal exchange between India and Eurasia during the Oligocene.

Li JT, Li Y, Klaus S, Rao DQ, Hillis DM, Zhang YP.

Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3441-6. doi: 10.1073/pnas.1300881110. Epub 2013 Feb 11. Erratum in: Proc Natl Acad Sci U S A. 2013 Apr 2;110(14):5731.

22.

Evolution. Who speaks with a forked tongue?

Losos JB, Hillis DM, Greene HW.

Science. 2012 Dec 14;338(6113):1428-9. doi: 10.1126/science.1232455. No abstract available.

PMID:
23239723
23.

Phylogeny unites animal sodium leak channels with fungal calcium channels in an ancient, voltage-insensitive clade.

Liebeskind BJ, Hillis DM, Zakon HH.

Mol Biol Evol. 2012 Dec;29(12):3613-6. doi: 10.1093/molbev/mss182. Epub 2012 Jul 19.

24.

Phylogeny, diversity, and species delimitation of the North American Round-Nosed Minnows (Teleostei: Dionda), as inferred from mitochondrial and nuclear DNA sequences.

Schönhuth S, Hillis DM, Neely DA, Lozano-Vilano L, Perdices A, Mayden RL.

Mol Phylogenet Evol. 2012 Jan;62(1):427-46. doi: 10.1016/j.ympev.2011.10.011. Epub 2011 Oct 25.

PMID:
22056492
25.

Profile of David M. Hillis. Interview by Sujata Gupta.

Hillis DM.

Proc Natl Acad Sci U S A. 2011 Jul 12;108(28):11320-2. doi: 10.1073/pnas.1107823108. Epub 2011 Jun 13. No abstract available.

26.

Rare gene capture in predominantly androgenetic species.

Hedtke SM, Glaubrecht M, Hillis DM.

Proc Natl Acad Sci U S A. 2011 Jun 7;108(23):9520-4. doi: 10.1073/pnas.1106742108. Epub 2011 May 23.

27.

Evolution of sodium channels predates the origin of nervous systems in animals.

Liebeskind BJ, Hillis DM, Zakon HH.

Proc Natl Acad Sci U S A. 2011 May 31;108(22):9154-9. doi: 10.1073/pnas.1106363108. Epub 2011 May 16.

28.

Source identification in two criminal cases using phylogenetic analysis of HIV-1 DNA sequences.

Scaduto DI, Brown JM, Haaland WC, Zwickl DJ, Hillis DM, Metzker ML.

Proc Natl Acad Sci U S A. 2010 Dec 14;107(50):21242-7. doi: 10.1073/pnas.1015673107. Epub 2010 Nov 15.

29.

The potential role of androgenesis in cytoplasmic-nuclear phylogenetic discordance.

Hedtke SM, Hillis DM.

Syst Biol. 2011 Jan;60(1):87-96. doi: 10.1093/sysbio/syq070. Epub 2010 Nov 8. No abstract available.

PMID:
21060067
30.

Deletion of the eIFiso4G subunit of the Arabidopsis eIFiso4F translation initiation complex impairs health and viability.

Lellis AD, Allen ML, Aertker AW, Tran JK, Hillis DM, Harbin CR, Caldwell C, Gallie DR, Browning KS.

Plant Mol Biol. 2010 Oct;74(3):249-63. doi: 10.1007/s11103-010-9670-z. Epub 2010 Aug 8.

31.

The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits.

Schoch CL, Sung GH, López-Giráldez F, Townsend JP, Miadlikowska J, Hofstetter V, Robbertse B, Matheny PB, Kauff F, Wang Z, Gueidan C, Andrie RM, Trippe K, Ciufetti LM, Wynns A, Fraker E, Hodkinson BP, Bonito G, Groenewald JZ, Arzanlou M, de Hoog GS, Crous PW, Hewitt D, Pfister DH, Peterson K, Gryzenhout M, Wingfield MJ, Aptroot A, Suh SO, Blackwell M, Hillis DM, Griffith GW, Castlebury LA, Rossman AY, Lumbsch HT, Lücking R, Büdel B, Rauhut A, Diederich P, Ertz D, Geiser DM, Hosaka K, Inderbitzin P, Kohlmeyer J, Volkmann-Kohlmeyer B, Mostert L, O'Donnell K, Sipman H, Rogers JD, Shoemaker RA, Sugiyama J, Summerbell RC, Untereiner W, Johnston PR, Stenroos S, Zuccaro A, Dyer PS, Crittenden PD, Cole MS, Hansen K, Trappe JM, Yahr R, Lutzoni F, Spatafora JW.

Syst Biol. 2009 Apr;58(2):224-39. doi: 10.1093/sysbio/syp020. Epub 2009 Jun 4.

PMID:
20525580
32.

Molecular evolution of Na+ channels in teleost fishes.

Zakon HH, Jost MC, Zwickl DJ, Lu Y, Hillis DM.

Integr Zool. 2009 Mar;4(1):64-74. doi: 10.1111/j.1749-4877.2008.00136.x. Review.

33.

Speciation by monobrachial centric fusions: a test of the model using nuclear DNA sequences from the bat genus Rhogeessa.

Baird AB, Hillis DM, Patton JC, Bickham JW.

Mol Phylogenet Evol. 2009 Feb;50(2):256-67. doi: 10.1016/j.ympev.2008.11.001. Epub 2008 Nov 13.

PMID:
19038350
34.

Molecular evolution of communication signals in electric fish.

Zakon HH, Zwickl DJ, Lu Y, Hillis DM.

J Exp Biol. 2008 Jun;211(Pt 11):1814-8. doi: 10.1242/jeb.015982. Review.

35.

Molecular evolution of southern North American Cyprinidae (Actinopterygii), with the description of the new genus Tampichthys from central Mexico.

Schönhuth S, Doadrio I, Dominguez-Dominguez O, Hillis DM, Mayden RL.

Mol Phylogenet Evol. 2008 May;47(2):729-56. doi: 10.1016/j.ympev.2007.11.036. Epub 2008 Feb 1.

PMID:
18353691
36.

Taxon sampling affects inferences of macroevolutionary processes from phylogenetic trees.

Heath TA, Zwickl DJ, Kim J, Hillis DM.

Syst Biol. 2008 Feb;57(1):160-6. doi: 10.1080/10635150701884640. No abstract available.

PMID:
18300029
37.

Fine-scale phylogeographic congruence despite demographic incongruence in two low-mobility saproxylic springtails.

Garrick RC, Rowell DM, Simmons CS, Hillis DM, Sunnucks P.

Evolution. 2008 May;62(5):1103-18. doi: 10.1111/j.1558-5646.2008.00349.x. Epub 2008 Feb 21.

PMID:
18298648
38.

All-male asexuality: origin and maintenance of androgenesis in the Asian clam Corbicula.

Hedtke SM, Stanger-Hall K, Baker RJ, Hillis DM.

Evolution. 2008 May;62(5):1119-36. doi: 10.1111/j.1558-5646.2008.00344.x. Epub 2008 Feb 8.

PMID:
18266987
39.

Toxin-resistant sodium channels: parallel adaptive evolution across a complete gene family.

Jost MC, Hillis DM, Lu Y, Kyle JW, Fozzard HA, Zakon HH.

Mol Biol Evol. 2008 Jun;25(6):1016-24. doi: 10.1093/molbev/msn025. Epub 2008 Feb 6.

40.

Phylogeny of North American fireflies (Coleoptera: Lampyridae): implications for the evolution of light signals.

Stanger-Hall KF, Lloyd JE, Hillis DM.

Mol Phylogenet Evol. 2007 Oct;45(1):33-49. Epub 2007 Jun 8.

PMID:
17644427
41.

Asexual evolution: can species exist without sex?

Hillis DM.

Curr Biol. 2007 Jul 17;17(14):R543-4.

42.

Making evolution relevant and exciting to biology students.

Hillis DM.

Evolution. 2007 Jun;61(6):1261-4. No abstract available.

PMID:
17542837
43.

Catchments catch all: long-term population history of a giant springtail from the southeast Australian highlands--a multigene approach.

Garrick RC, Sands CJ, Rowell DM, Hillis DM, Sunnucks P.

Mol Ecol. 2007 May;16(9):1865-82.

PMID:
17444898
44.

Constraints in naming parts of the Tree of Life.

Hillis DM.

Mol Phylogenet Evol. 2007 Feb;42(2):331-8. Epub 2006 Aug 11.

PMID:
16997582
45.

Resolution of phylogenetic conflict in large data sets by increased taxon sampling.

Hedtke SM, Townsend TM, Hillis DM.

Syst Biol. 2006 Jun;55(3):522-9. No abstract available.

PMID:
16861214
46.

Phylogeny and biogeography of a cosmopolitan frog radiation: Late cretaceous diversification resulted in continent-scale endemism in the family ranidae.

Bossuyt F, Brown RM, Hillis DM, Cannatella DC, Milinkovitch MC.

Syst Biol. 2006 Aug;55(4):579-94.

PMID:
16857652
47.

Polyploids with different origins and ancestors form a single sexual polyploid species.

Holloway AK, Cannatella DC, Gerhardt HC, Hillis DM.

Am Nat. 2006 Apr;167(4):E88-101. Epub 2006 Mar 8.

PMID:
16670990
48.

Sodium channel genes and the evolution of diversity in communication signals of electric fishes: convergent molecular evolution.

Zakon HH, Lu Y, Zwickl DJ, Hillis DM.

Proc Natl Acad Sci U S A. 2006 Mar 7;103(10):3675-80. Epub 2006 Feb 27.

49.

Analysis and visualization of tree space.

Hillis DM, Heath TA, St John K.

Syst Biol. 2005 Jun;54(3):471-82.

PMID:
16012112
50.

Phylogeny of the New World true frogs (Rana).

Hillis DM, Wilcox TP.

Mol Phylogenet Evol. 2005 Feb;34(2):299-314. Epub 2004 Dec 8. Erratum in: Mol Phylogenet Evol. 2006 Dec;41(3):735.

PMID:
15619443

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