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Items: 1 to 50 of 318

1.

Silencing cryptic specialized metabolism in Streptomyces by the nucleoid-associated protein Lsr2.

Gehrke EJ, Zhang X, Pimentel-Elardo SM, Johnson AR, Rees CA, Jones SE, Hindra, Gehrke SS, Turvey S, Boursalie S, Hill JE, Carlson EE, Nodwell JR, Elliot MA.

Elife. 2019 Jun 19;8. pii: e47691. doi: 10.7554/eLife.47691.

2.

Evaluation of different adsorbent materials for the untargeted and targeted bacterial VOC analysis using GC×GC-MS.

Franchina FA, Purcaro G, Burklund A, Beccaria M, Hill JE.

Anal Chim Acta. 2019 Aug 20;1066:146-153. doi: 10.1016/j.aca.2019.03.027. Epub 2019 Mar 22.

PMID:
31027530
3.

Respiratory viruses identified in western Canadian beef cattle by metagenomic sequencing and their association with bovine respiratory disease.

Zhang M, Hill JE, Fernando C, Alexander TW, Timsit E, van der Meer F, Huang Y.

Transbound Emerg Dis. 2019 May;66(3):1379-1386. doi: 10.1111/tbed.13172. Epub 2019 Apr 9.

PMID:
30873724
4.

Breath metabolome of mice infected with Pseudomonas aeruginosa.

Purcaro G, Nasir M, Franchina FA, Rees CA, Aliyeva M, Daphtary N, Wargo MJ, Lundblad LKA, Hill JE.

Metabolomics. 2019 Jan 7;15(1):10. doi: 10.1007/s11306-018-1461-6.

5.

Update on cpnDB: a reference database of chaperonin sequences.

Vancuren SJ, Hill JE.

Database (Oxford). 2019 Jan 1;2019. pii: baz033. doi: 10.1093/database/baz033.

6.

Printable QR code paper microfluidic colorimetric assay for screening volatile biomarkers.

Burklund A, Saturley-Hall HK, Franchina FA, Hill JE, Zhang JXJ.

Biosens Bioelectron. 2019 Mar 1;128:97-103. doi: 10.1016/j.bios.2018.12.026. Epub 2018 Dec 21.

PMID:
30640126
7.

Derivation and Differentiation of Canine Ovarian Mesenchymal Stem Cells.

Hill ABT, Hill JEBT, Bressan FF, Miglino MA, Garcia JM.

J Vis Exp. 2018 Dec 16;(142). doi: 10.3791/58163.

PMID:
30596383
8.

Roads do not increase carrion use by a vertebrate scavenging community.

Hill JE, DeVault TL, Beasley JC, Rhodes OE Jr, Belant JL.

Sci Rep. 2018 Nov 5;8(1):16331. doi: 10.1038/s41598-018-34224-x.

9.

Exhaled human breath analysis in active pulmonary tuberculosis diagnostics by comprehensive gas chromatography-mass spectrometry and chemometric techniques.

Beccaria M, Bobak C, Maitshotlo B, Mellors TR, Purcaro G, Franchina FA, Rees CA, Nasir M, Black A, Hill JE.

J Breath Res. 2018 Nov 5;13(1):016005. doi: 10.1088/1752-7163/aae80e.

10.

Investigation of mycobacteria fatty acid profile using different ionization energies in GC-MS.

Beccaria M, Franchina FA, Nasir M, Mellors T, Hill JE, Purcaro G.

Anal Bioanal Chem. 2018 Dec;410(30):7987-7996. doi: 10.1007/s00216-018-1421-z. Epub 2018 Oct 29.

PMID:
30370475
11.

Retrospective detection of Brachyspira hampsonii in archived colitis cases from western Canadian swine.

Hill JE, Detmer SE, Fernando C, Derbawka SA, Nosach R, Harding JCS.

Transbound Emerg Dis. 2019 Jan;66(1):381-388. doi: 10.1111/tbed.13032. Epub 2018 Oct 16.

PMID:
30281940
12.

Polycyclic Indoline Derivatives by Dearomatizing Anionic Cyclization of Indole and Tryptamine-Derived Ureas.

Hill JE, Lefebvre Q, Fraser LA, Clayden J.

Org Lett. 2018 Sep 21;20(18):5770-5773. doi: 10.1021/acs.orglett.8b02468. Epub 2018 Sep 11.

PMID:
30203980
13.

Detection of high-risk carbapenem-resistant Klebsiella pneumoniae and Enterobacter cloacae isolates using volatile molecular profiles.

Rees CA, Nasir M, Smolinska A, Lewis AE, Kane KR, Kossmann SE, Sezer O, Zucchi PC, Doi Y, Hirsch EB, Hill JE.

Sci Rep. 2018 Sep 5;8(1):13297. doi: 10.1038/s41598-018-31543-x.

14.

The volatile molecular profiles of seven Streptococcus pneumoniae serotypes.

Mellors TR, Rees CA, Franchina FA, Burklund A, Patel C, Hathaway LJ, Hill JE.

J Chromatogr B Analyt Technol Biomed Life Sci. 2018 Oct 1;1096:208-213. doi: 10.1016/j.jchromb.2018.08.032. Epub 2018 Aug 29.

15.

In Vitro Porcine Colon Culture.

Costa MO, Hill JE, Dame MK, Harding JCS.

Methods Mol Biol. 2018;1817:185-195. doi: 10.1007/978-1-4939-8600-2_18.

PMID:
29959714
16.

Increased richness and diversity of the vaginal microbiota and spontaneous preterm birth.

Freitas AC, Bocking A, Hill JE, Money DM; VOGUE Research Group.

Microbiome. 2018 Jun 28;6(1):117. doi: 10.1186/s40168-018-0502-8.

17.

Identification of Mycobacterium tuberculosis using volatile biomarkers in culture and exhaled breath.

Mellors TR, Nasir M, Franchina FA, Smolinska A, Blanchet L, Flynn JL, Tomko J, O'Malley M, Scanga CA, Lin PL, Wagner J, Hill JE.

J Breath Res. 2018 Oct 30;13(1):016004. doi: 10.1088/1752-7163/aacd18.

PMID:
29910196
18.

SPME-GC×GC-TOF MS fingerprint of virally-infected cell culture: Sample preparation optimization and data processing evaluation.

Purcaro G, Stefanuto PH, Franchina FA, Beccaria M, Wieland-Alter WF, Wright PF, Hill JE.

Anal Chim Acta. 2018 Oct 16;1027:158-167. doi: 10.1016/j.aca.2018.03.037. Epub 2018 Mar 30.

PMID:
29866265
19.

Volatile fingerprinting of Pseudomonas aeruginosa and respiratory syncytial virus infection in an in vitro cystic fibrosis co-infection model.

Purcaro G, Rees CA, Melvin JA, Bomberger JM, Hill JE.

J Breath Res. 2018 Jul 3;12(4):046001. doi: 10.1088/1752-7163/aac2f1.

20.

Bifidobacteria isolated from vaginal and gut microbiomes are indistinguishable by comparative genomics.

Freitas AC, Hill JE.

PLoS One. 2018 Apr 23;13(4):e0196290. doi: 10.1371/journal.pone.0196290. eCollection 2018.

21.

Consecutive Ring Expansion and Contraction for the Synthesis of 1-Aryl Tetrahydroisoquinolines and Tetrahydrobenzazepines from Readily Available Heterocyclic Precursors.

Hill JE, Matlock JV, Lefebvre Q, Cooper KG, Clayden J.

Angew Chem Int Ed Engl. 2018 May 14;57(20):5788-5791. doi: 10.1002/anie.201802188. Epub 2018 Apr 17.

PMID:
29539221
22.

Effects of vulture exclusion on carrion consumption by facultative scavengers.

Hill JE, DeVault TL, Beasley JC, Rhodes OE Jr, Belant JL.

Ecol Evol. 2018 Feb 1;8(5):2518-2526. doi: 10.1002/ece3.3840. eCollection 2018 Mar.

23.

Characterization of Brachyspira communities from clinical cases of swine mucohaemorrhagic diarrhea through deep sequencing of the NADH oxidase (nox) gene.

Johnson LA, Fernando C, Harding JCS, Hill JE.

Vet Microbiol. 2018 Feb;214:81-88. doi: 10.1016/j.vetmic.2017.12.012. Epub 2017 Dec 20.

PMID:
29408037
24.

Isolation, characterization and prevalence of a novel Gammaherpesvirus in Eptesicus fuscus, the North American big brown bat.

Subudhi S, Rapin N, Dorville N, Hill JE, Town J, Willis CKR, Bollinger TK, Misra V.

Virology. 2018 Mar;516:227-238. doi: 10.1016/j.virol.2018.01.024.

25.

Volatile molecules from bronchoalveolar lavage fluid can 'rule-in' Pseudomonas aeruginosa and 'rule-out' Staphylococcus aureus infections in cystic fibrosis patients.

Nasir M, Bean HD, Smolinska A, Rees CA, Zemanick ET, Hill JE.

Sci Rep. 2018 Jan 16;8(1):826. doi: 10.1038/s41598-017-18491-8.

26.

Preliminary investigation of human exhaled breath for tuberculosis diagnosis by multidimensional gas chromatography - Time of flight mass spectrometry and machine learning.

Beccaria M, Mellors TR, Petion JS, Rees CA, Nasir M, Systrom HK, Sairistil JW, Jean-Juste MA, Rivera V, Lavoile K, Severe P, Pape JW, Wright PF, Hill JE.

J Chromatogr B Analyt Technol Biomed Life Sci. 2018 Feb 1;1074-1075:46-50. doi: 10.1016/j.jchromb.2018.01.004. Epub 2018 Jan 4.

PMID:
29331743
27.

Draft Genome Sequences of Bifidobacterium Strains N4G05 and N5G01, Isolated from the Human Vaginal Microbiome.

Freitas AC, Hill JE.

Genome Announc. 2018 Jan 11;6(2). pii: e01433-17. doi: 10.1128/genomeA.01433-17.

28.

Towards the use of breath for detecting mycobacterial infection: a case study in a murine model.

Franchina FA, Mellors TR, Aliyeva M, Wagner J, Daphtary N, Lundblad LKA, Fortune SM, Rubin EJ, Hill JE.

J Breath Res. 2018 Feb 7;12(2):026008. doi: 10.1088/1752-7163/aaa016.

PMID:
29219122
29.

Volatile fingerprinting of human respiratory viruses from cell culture.

Purcaro G, Rees CA, Wieland-Alter WF, Schneider MJ, Wang X, Stefanuto PH, Wright PF, Enelow RI, Hill JE.

J Breath Res. 2018 Mar 1;12(2):026015. doi: 10.1088/1752-7163/aa9eef.

30.

Distinct Campylobacter fetus lineages adapted as livestock pathogens and human pathobionts in the intestinal microbiota.

Iraola G, Forster SC, Kumar N, Lehours P, Bekal S, García-Peña FJ, Paolicchi F, Morsella C, Hotzel H, Hsueh PR, Vidal A, Lévesque S, Yamazaki W, Balzan C, Vargas A, Piccirillo A, Chaban B, Hill JE, Betancor L, Collado L, Truyers I, Midwinter AC, Dagi HT, Mégraud F, Calleros L, Pérez R, Naya H, Lawley TD.

Nat Commun. 2017 Nov 8;8(1):1367. doi: 10.1038/s41467-017-01449-9.

31.

In vitro attenuation of a virulent swine isolate of Brachyspira hampsonii.

Perez JBDS, Fernando C, Nosach RV, Huang Y, Harding JCS, Hill JE.

Pathog Dis. 2018 Feb 1;76(1). doi: 10.1093/femspd/ftx116.

PMID:
29069340
32.

Estimation of start and stop numbers for cluster resolution feature selection algorithm: an empirical approach using null distribution analysis of Fisher ratios.

Adutwum LA, de la Mata AP, Bean HD, Hill JE, Harynuk JJ.

Anal Bioanal Chem. 2017 Nov;409(28):6699-6708. doi: 10.1007/s00216-017-0628-8. Epub 2017 Sep 29.

PMID:
28963623
33.

Comprehensive volatile metabolic fingerprinting of bacterial and fungal pathogen groups.

Rees CA, Burklund A, Stefanuto PH, Schwartzman JD, Hill JE.

J Breath Res. 2018 Jan 3;12(2):026001. doi: 10.1088/1752-7163/aa8f7f.

34.

A persistently infecting coronavirus in hibernating Myotis lucifugus, the North American little brown bat.

Subudhi S, Rapin N, Bollinger TK, Hill JE, Donaldson ME, Davy CM, Warnecke L, Turner JM, Kyle CJ, Willis CKR, Misra V.

J Gen Virol. 2017 Sep;98(9):2297-2309. doi: 10.1099/jgv.0.000898. Epub 2017 Aug 25.

PMID:
28840816
35.

The vaginal microbiome of pregnant women is less rich and diverse, with lower prevalence of Mollicutes, compared to non-pregnant women.

Freitas AC, Chaban B, Bocking A, Rocco M, Yang S, Hill JE, Money DM; VOGUE Research Group.

Sci Rep. 2017 Aug 23;7(1):9212. doi: 10.1038/s41598-017-07790-9.

36.

An optimized swine dysentery murine model to characterize shedding and clinical disease associated with "Brachyspira hampsonii" infection.

Ek CE, Nosach R, Fernando C, Huang Y, Perez JBDS, Costa MO, Ekanayake S, Hill JE, Harding JCS.

BMC Vet Res. 2017 Aug 22;13(1):261. doi: 10.1186/s12917-017-1166-5.

37.

Sniffing out the hypoxia volatile metabolic signature of Aspergillus fumigatus.

Rees CA, Stefanuto PH, Beattie SR, Bultman KM, Cramer RA, Hill JE.

J Breath Res. 2017 Aug 21;11(3):036003. doi: 10.1088/1752-7163/aa7b3e.

38.

Quantification, isolation and characterization of Bifidobacterium from the vaginal microbiomes of reproductive aged women.

Freitas AC, Hill JE.

Anaerobe. 2017 Oct;47:145-156. doi: 10.1016/j.anaerobe.2017.05.012. Epub 2017 May 25.

PMID:
28552417
39.

The volatile molecule signature of four mycobacteria species.

Mellors TR, Rees CA, Wieland-Alter WF, von Reyn CF, Hill JE.

J Breath Res. 2017 Jun 29;11(3):031002. doi: 10.1088/1752-7163/aa6e06.

PMID:
28424429
40.

Point stresses during reproductive stage rather than warming seasonal temperature determine yield in temperate rice.

Espe MB, Hill JE, Hijmans RJ, McKenzie K, Mutters R, Espino LA, Leinfelder-Miles M, van Kessel C, Linquist BA.

Glob Chang Biol. 2017 Oct;23(10):4386-4395. doi: 10.1111/gcb.13719. Epub 2017 Jun 12.

PMID:
28391611
41.

Infection of porcine colon explants with "Brachyspira hampsonii" leads to increased epithelial necrosis and catarrhal exudate.

Costa MO, Fernando C, Nosach R, Harding JCS, Hill JE.

Pathog Dis. 2017 Apr 1;75(3). doi: 10.1093/femspd/ftx032.

PMID:
28369531
42.

Gardnerella vaginalis diversity and ecology in relation to vaginal symptoms.

Schellenberg JJ, Patterson MH, Hill JE.

Res Microbiol. 2017 Nov - Dec;168(9-10):837-844. doi: 10.1016/j.resmic.2017.02.011. Epub 2017 Mar 22.

PMID:
28341009
43.

Microbial profiling of cpn60 universal target sequences in artificial mixtures of vaginal bacteria sampled by nylon swabs or self-sampling devices under different storage conditions.

Schellenberg JJ, Oh AY, Hill JE.

J Microbiol Methods. 2017 May;136:57-64. doi: 10.1016/j.mimet.2017.03.003. Epub 2017 Mar 9.

PMID:
28285169
44.

Volatile metabolic diversity of Klebsiella pneumoniae in nutrient-replete conditions.

Rees CA, Nordick KV, Franchina FA, Lewis AE, Hirsch EB, Hill JE.

Metabolomics. 2017 Feb;13(2). pii: 18. doi: 10.1007/s11306-016-1161-z. Epub 2017 Jan 12.

45.

A new method to evaluate macaque health using exhaled breath: A case study of M. tuberculosis in a BSL-3 setting.

Mellors TR, Blanchet L, Flynn JL, Tomko J, O'Malley M, Scanga CA, Lin PL, Hill JE.

J Appl Physiol (1985). 2017 Mar 1;122(3):695-701. doi: 10.1152/japplphysiol.00888.2016. Epub 2017 Jan 5.

46.

Streptomyces exploration is triggered by fungal interactions and volatile signals.

Jones SE, Ho L, Rees CA, Hill JE, Nodwell JR, Elliot MA.

Elife. 2017 Jan 3;6. pii: e21738. doi: 10.7554/eLife.21738.

47.

Expanding the Klebsiella pneumoniae volatile metabolome using advanced analytical instrumentation for the detection of novel metabolites.

Rees CA, Franchina FA, Nordick KV, Kim PJ, Hill JE.

J Appl Microbiol. 2017 Mar;122(3):785-795. doi: 10.1111/jam.13372. Epub 2017 Feb 1.

PMID:
27930839
48.
49.

High Diversity and Variability in the Vaginal Microbiome in Women following Preterm Premature Rupture of Membranes (PPROM): A Prospective Cohort Study.

Paramel Jayaprakash T, Wagner EC, van Schalkwyk J, Albert AY, Hill JE, Money DM; PPROM Study Group.

PLoS One. 2016 Nov 18;11(11):e0166794. doi: 10.1371/journal.pone.0166794. eCollection 2016.

50.

Characterization of the Clostridium difficile volatile metabolome using comprehensive two-dimensional gas chromatography time-of-flight mass spectrometry.

Rees CA, Shen A, Hill JE.

J Chromatogr B Analyt Technol Biomed Life Sci. 2016 Dec 15;1039:8-16. doi: 10.1016/j.jchromb.2016.11.009. Epub 2016 Nov 9.

PMID:
27855313

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