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The interaction between genotype and maternal nutritional environments affects tomato seed and seedling quality.

Geshnizjani N, Sarikhani Khorami S, Willems LAJ, Snoek BL, Hilhorst HWM, Ligterink W.

J Exp Bot. 2019 May 9;70(10):2905-2918. doi: 10.1093/jxb/erz101.


Induction of desiccation tolerance in desiccation sensitive Citrus limon seeds.

Marques A, Nijveen H, Somi C, Ligterink W, Hilhorst H.

J Integr Plant Biol. 2019 May;61(5):624-638. doi: 10.1111/jipb.12788. Epub 2019 Mar 28.


Dissecting the Genomic Diversification of Late Embryogenesis Abundant (LEA) Protein Gene Families in Plants.

Artur MAS, Zhao T, Ligterink W, Schranz E, Hilhorst HWM.

Genome Biol Evol. 2019 Feb 1;11(2):459-471. doi: 10.1093/gbe/evy248.


NADP-MALIC ENZYME 1 affects germination after seed storage in Arabidopsis thaliana.

Yazdanpanah F, Maurino VG, Mettler-Altmann T, Buijs G, Bailly M, Jashni MK, Willems L, Sergeeva LI, Rajjou L, Hilhorst HWM, Bentsink L.

Plant Cell Physiol. 2018 Nov 2. doi: 10.1093/pcp/pcy213. [Epub ahead of print]


Characterization of and genetic variation for tomato seed thermo-inhibition and thermo-dormancy.

Geshnizjani N, Ghaderi-Far F, Willems LAJ, Hilhorst HWM, Ligterink W.

BMC Plant Biol. 2018 Oct 11;18(1):229. doi: 10.1186/s12870-018-1455-6.


A Footprint of Plant Desiccation Tolerance. Does It Exist?

Hilhorst HWM, Costa MD, Farrant JM.

Mol Plant. 2018 Aug 6;11(8):1003-1005. doi: 10.1016/j.molp.2018.07.001. Epub 2018 Jul 20. No abstract available.


Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis.

Griesmann M, Chang Y, Liu X, Song Y, Haberer G, Crook MB, Billault-Penneteau B, Lauressergues D, Keller J, Imanishi L, Roswanjaya YP, Kohlen W, Pujic P, Battenberg K, Alloisio N, Liang Y, Hilhorst H, Salgado MG, Hocher V, Gherbi H, Svistoonoff S, Doyle JJ, He S, Xu Y, Xu S, Qu J, Gao Q, Fang X, Fu Y, Normand P, Berry AM, Wall LG, Ané JM, Pawlowski K, Xu X, Yang H, Spannagl M, Mayer KFX, Wong GK, Parniske M, Delaux PM, Cheng S.

Science. 2018 Jul 13;361(6398). pii: eaat1743. doi: 10.1126/science.aat1743. Epub 2018 May 24.


Construction of a High-Density Genetic Map from RNA-Seq Data for an Arabidopsis Bay-0 × Shahdara RIL Population.

Serin EAR, Snoek LB, Nijveen H, Willems LAJ, Jiménez-Gómez JM, Hilhorst HWM, Ligterink W.

Front Genet. 2017 Dec 5;8:201. doi: 10.3389/fgene.2017.00201. eCollection 2017.


Role of Tulipa gesneriana TEOSINTE BRANCHED1 (TgTB1) in the control of axillary bud outgrowth in bulbs.

Moreno-Pachon NM, Mutimawurugo MC, Heynen E, Sergeeva L, Benders A, Blilou I, Hilhorst HWM, Immink RGH.

Plant Reprod. 2018 Jun;31(2):145-157. doi: 10.1007/s00497-017-0316-z. Epub 2017 Dec 7.


Metabolomic analysis of tomato seed germination.

Kazmi RH, Willems LAJ, Joosen RVL, Khan N, Ligterink W, Hilhorst HWM.

Metabolomics. 2017;13(12):145. doi: 10.1007/s11306-017-1284-x. Epub 2017 Oct 23.


Tulipa gesneriana and Lilium longiflorum PEBP Genes and Their Putative Roles in Flowering Time Control.

Leeggangers HACF, Rosilio-Brami T, Bigas-Nadal J, Rubin N, van Dijk ADJ, Nunez de Caceres Gonzalez FF, Saadon-Shitrit S, Nijveen H, Hilhorst HWM, Immink RGH, Zaccai M.

Plant Cell Physiol. 2018 Jan 1;59(1):90-106. doi: 10.1093/pcp/pcx164.


Metabolite profiling and associated gene expression reveal two metabolic shifts during the seed-to-seedling transition in Arabidopsis thaliana.

Silva AT, Ligterink W, Hilhorst HWM.

Plant Mol Biol. 2017 Nov;95(4-5):481-496. doi: 10.1007/s11103-017-0665-x. Epub 2017 Oct 18.


Estimation of metabolite networks with regard to a specific covariable: applications to plant and human data.

Bartzis G, Deelen J, Maia J, Ligterink W, Hilhorst HWM, Houwing-Duistermaat JJ, van Eeuwijk F, Uh HW.

Metabolomics. 2017;13(11):129. doi: 10.1007/s11306-017-1263-2. Epub 2017 Sep 22.


Differentially expressed genes during the imbibition of dormant and after-ripened seeds - a reverse genetics approach.

Yazdanpanah F, Hanson J, Hilhorst HWM, Bentsink L.

BMC Plant Biol. 2017 Sep 11;17(1):151. doi: 10.1186/s12870-017-1098-z.


Orthodox Seeds and Resurrection Plants: Two of a Kind?

Costa MD, Cooper K, Hilhorst HWM, Farrant JM.

Plant Physiol. 2017 Oct;175(2):589-599. doi: 10.1104/pp.17.00760. Epub 2017 Aug 29. Review. No abstract available.


A footprint of desiccation tolerance in the genome of Xerophyta viscosa.

Costa MD, Artur MA, Maia J, Jonkheer E, Derks MF, Nijveen H, Williams B, Mundree SG, Jiménez-Gómez JM, Hesselink T, Schijlen EG, Ligterink W, Oliver MJ, Farrant JM, Hilhorst HW.

Nat Plants. 2017 Mar 27;3:17038. doi: 10.1038/nplants.2017.38.


Temperature fine-tunes Mediterranean Arabidopsis thaliana life-cycle phenology geographically.

Marcer A, Vidigal DS, James PMA, Fortin MJ, Méndez-Vigo B, Hilhorst HWM, Bentsink L, Alonso-Blanco C, Picó FX.

Plant Biol (Stuttg). 2018 Jan;20 Suppl 1:148-156. doi: 10.1111/plb.12558. Epub 2017 Mar 23.


Molecular Regulation of Temperature-Dependent Floral Induction in Tulipa gesneriana.

Leeggangers HA, Nijveen H, Bigas JN, Hilhorst HW, Immink RG.

Plant Physiol. 2017 Mar;173(3):1904-1919. doi: 10.1104/pp.16.01758. Epub 2017 Jan 19.


AraQTL - workbench and archive for systems genetics in Arabidopsis thaliana.

Nijveen H, Ligterink W, Keurentjes JJ, Loudet O, Long J, Sterken MG, Prins P, Hilhorst HW, de Ridder D, Kammenga JE, Snoek BL.

Plant J. 2017 Mar;89(6):1225-1235. doi: 10.1111/tpj.13457. Epub 2017 Feb 13.


High-Throughput Scoring of Seed Germination.

Ligterink W, Hilhorst HW.

Methods Mol Biol. 2017;1497:57-72.


Key genes involved in desiccation tolerance and dormancy across life forms.

Costa MCD, Farrant JM, Oliver MJ, Ligterink W, Buitink J, Hilhorst HMW.

Plant Sci. 2016 Oct;251:162-168. doi: 10.1016/j.plantsci.2016.02.001. Epub 2016 Feb 3.


Elucidating and mining the Tulipa and Lilium transcriptomes.

Moreno-Pachon NM, Leeggangers HA, Nijveen H, Severing E, Hilhorst H, Immink RG.

Plant Mol Biol. 2016 Oct;92(3):249-61. doi: 10.1007/s11103-016-0508-1. Epub 2016 Jul 7.


CyLineUp: A Cytoscape app for visualizing data in network small multiples.

Costa MCD, Slijkhuis T, Ligterink W, Hilhorst HWM, de Ridder D, Nijveen H.

F1000Res. 2016 Apr 11;5:635. doi: 10.12688/f1000research.8402.1. eCollection 2016.


Effect of osmopriming on germination and initial growth of Physalis angulata L. under salt stress and on expression of associated genes.

Souza MO, Pelacani CR, Willems LA, Castro RD, Hilhorst HW, Ligterink W.

An Acad Bras Cienc. 2016;88 Suppl 1:503-16. doi: 10.1590/0001-3765201620150043.


Learning from Co-expression Networks: Possibilities and Challenges.

Serin EA, Nijveen H, Hilhorst HW, Ligterink W.

Front Plant Sci. 2016 Apr 8;7:444. doi: 10.3389/fpls.2016.00444. eCollection 2016. Review.


Galactinol as marker for seed longevity.

de Souza Vidigal D, Willems L, van Arkel J, Dekkers BJW, Hilhorst HWM, Bentsink L.

Plant Sci. 2016 May;246:112-118. doi: 10.1016/j.plantsci.2016.02.015. Epub 2016 Feb 27.


Altitudinal and climatic associations of seed dormancy and flowering traits evidence adaptation of annual life cycle timing in Arabidopsis thaliana.

Vidigal DS, Marques AC, Willems LA, Buijs G, Méndez-Vigo B, Hilhorst HW, Bentsink L, Picó FX, Alonso-Blanco C.

Plant Cell Environ. 2016 Aug;39(8):1737-48. doi: 10.1111/pce.12734. Epub 2016 May 4.


Post-embryonic Hourglass Patterns Mark Ontogenetic Transitions in Plant Development.

Drost HG, Bellstädt J, Ó'Maoiléidigh DS, Silva AT, Gabel A, Weinholdt C, Ryan PT, Dekkers BJ, Bentsink L, Hilhorst HW, Ligterink W, Wellmer F, Grosse I, Quint M.

Mol Biol Evol. 2016 May;33(5):1158-63. doi: 10.1093/molbev/msw039. Epub 2016 Feb 23.


A Predictive Coexpression Network Identifies Novel Genes Controlling the Seed-to-Seedling Phase Transition in Arabidopsis thaliana.

Silva AT, Ribone PA, Chan RL, Ligterink W, Hilhorst HW.

Plant Physiol. 2016 Apr;170(4):2218-31. doi: 10.1104/pp.15.01704. Epub 2016 Feb 17.


Gene expression profiling of the green seed problem in Soybean.

Teixeira RN, Ligterink W, França-Neto Jde B, Hilhorst HW, da Silva EA.

BMC Plant Biol. 2016 Feb 1;16:37. doi: 10.1186/s12870-016-0729-0.


Effects of Parental Temperature and Nitrate on Seed Performance are Reflected by Partly Overlapping Genetic and Metabolic Pathways.

He H, Willems LA, Batushansky A, Fait A, Hanson J, Nijveen H, Hilhorst HW, Bentsink L.

Plant Cell Physiol. 2016 Mar;57(3):473-87. doi: 10.1093/pcp/pcv207. Epub 2016 Jan 6.


The Arabidopsis DELAY OF GERMINATION 1 gene affects ABSCISIC ACID INSENSITIVE 5 (ABI5) expression and genetically interacts with ABI3 during Arabidopsis seed development.

Dekkers BJ, He H, Hanson J, Willems LA, Jamar DC, Cueff G, Rajjou L, Hilhorst HW, Bentsink L.

Plant J. 2016 Feb;85(4):451-65. doi: 10.1111/tpj.13118. Epub 2016 Feb 5.


Time-series analysis of the transcriptome of the re-establishment of desiccation tolerance by ABA in germinated Arabidopsis thaliana seeds.

Costa MC, Nijveen H, Ligterink W, Buitink J, Hilhorst HW.

Genom Data. 2015 Jun 6;5:154-6. doi: 10.1016/j.gdata.2015.06.003. eCollection 2015 Sep.


Metabolite profiling, antioxidant and antibacterial activities of Brazilian propolis: Use of correlation and multivariate analyses to identify potential bioactive compounds.

Bittencourt MLF, Ribeiro PR, Franco RLP, Hilhorst HWM, de Castro RD, Fernandez LG.

Food Res Int. 2015 Oct;76(Pt 3):449-457. doi: 10.1016/j.foodres.2015.07.008. Epub 2015 Jul 14.


Metabolite profiling of Ricinus communis germination at different temperatures provides new insights into thermo-mediated requirements for successful seedling establishment.

Ribeiro PR, Willems LA, Mutimawurugo MC, Fernandez LG, de Castro RD, Ligterink W, Hilhorst HW.

Plant Sci. 2015 Oct;239:180-91. doi: 10.1016/j.plantsci.2015.08.002. Epub 2015 Aug 4.


Effect of temperature on biomass allocation in seedlings of two contrasting genotypes of the oilseed crop Ricinus communis.

Ribeiro PR, Zanotti RF, Deflers C, Fernandez LG, Castro RD, Ligterink W, Hilhorst HW.

J Plant Physiol. 2015 Aug 1;185:31-9. doi: 10.1016/j.jplph.2015.07.005. Epub 2015 Jul 31.


Expression profiles of genes related to carbohydrate metabolism provide new insights into carbohydrate accumulation in seeds and seedlings of Ricinus communis in response to temperature.

Ribeiro PR, Ligterink W, Hilhorst HW.

Plant Physiol Biochem. 2015 Oct;95:103-12. doi: 10.1016/j.plaphy.2015.07.023. Epub 2015 Jul 26.


A gene co-expression network predicts functional genes controlling the re-establishment of desiccation tolerance in germinated Arabidopsis thaliana seeds.

Costa MC, Righetti K, Nijveen H, Yazdanpanah F, Ligterink W, Buitink J, Hilhorst HW.

Planta. 2015 Aug;242(2):435-49. doi: 10.1007/s00425-015-2283-7. Epub 2015 Mar 26.


Acquisition and loss of desiccation tolerance in seeds: from experimental model to biological relevance.

Dekkers BJ, Costa MC, Maia J, Bentsink L, Ligterink W, Hilhorst HW.

Planta. 2015 Mar;241(3):563-77. doi: 10.1007/s00425-014-2240-x. Epub 2015 Jan 8. Review.


Interaction between parental environment and genotype affects plant and seed performance in Arabidopsis.

He H, de Souza Vidigal D, Snoek LB, Schnabel S, Nijveen H, Hilhorst H, Bentsink L.

J Exp Bot. 2014 Dec;65(22):6603-15. doi: 10.1093/jxb/eru378. Epub 2014 Sep 18.


Physiological and biochemical responses of Ricinus communis seedlings to different temperatures: a metabolomics approach.

Ribeiro PR, Fernandez LG, de Castro RD, Ligterink W, Hilhorst HW.

BMC Plant Biol. 2014 Aug 12;14:223. doi: 10.1186/s12870-014-0223-5.


Abscisic acid (ABA) sensitivity regulates desiccation tolerance in germinated Arabidopsis seeds.

Maia J, Dekkers BJ, Dolle MJ, Ligterink W, Hilhorst HW.

New Phytol. 2014 Jul;203(1):81-93. doi: 10.1111/nph.12785. Epub 2014 Apr 3.


Identifying genotype-by-environment interactions in the metabolism of germinating arabidopsis seeds using generalized genetical genomics.

Joosen RV, Arends D, Li Y, Willems LA, Keurentjes JJ, Ligterink W, Jansen RC, Hilhorst HW.

Plant Physiol. 2013 Jun;162(2):553-66. doi: 10.1104/pp.113.216176. Epub 2013 Apr 19.


Exploring the natural variation for seedling traits and their link with seed dimensions in tomato.

Khan N, Kazmi RH, Willems LA, van Heusden AW, Ligterink W, Hilhorst HW.

PLoS One. 2012;7(8):e43991. doi: 10.1371/journal.pone.0043991. Epub 2012 Aug 30.


The re-establishment of desiccation tolerance in germinated Arabidopsis thaliana seeds and its associated transcriptome.

Maia J, Dekkers BJ, Provart NJ, Ligterink W, Hilhorst HW.

PLoS One. 2011;6(12):e29123. doi: 10.1371/journal.pone.0029123. Epub 2011 Dec 14.


Visualizing the genetic landscape of Arabidopsis seed performance.

Joosen RV, Arends D, Willems LA, Ligterink W, Jansen RC, Hilhorst HW.

Plant Physiol. 2012 Feb;158(2):570-89. doi: 10.1104/pp.111.186676. Epub 2011 Dec 12.


Mechanism and control of Genipa americana seed germination.

Queiroz SE, da Silva EA, Davide AC, José AC, Silva AT, Fraiz AC, Faria JM, Hilhorst HW.

Physiol Plant. 2012 Mar;144(3):263-76. doi: 10.1111/j.1399-3054.2011.01554.x. Epub 2012 Jan 6.


Complex genetics controls natural variation among seed quality phenotypes in a recombinant inbred population of an interspecific cross between Solanum lycopersicum × Solanum pimpinellifolium.

Kazmi RH, Khan N, Willems LA, VAN Heusden AW, Ligterink W, Hilhorst HW.

Plant Cell Environ. 2012 May;35(5):929-51. doi: 10.1111/j.1365-3040.2011.02463.x. Epub 2011 Dec 8.


Standardizing seed dormancy research.

Hilhorst HW.

Methods Mol Biol. 2011;773:43-52. doi: 10.1007/978-1-61779-231-1_3.


Identification of reference genes for RT-qPCR expression analysis in Arabidopsis and tomato seeds.

Dekkers BJ, Willems L, Bassel GW, van Bolderen-Veldkamp RP, Ligterink W, Hilhorst HW, Bentsink L.

Plant Cell Physiol. 2012 Jan;53(1):28-37. doi: 10.1093/pcp/pcr113. Epub 2011 Aug 18.


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