Format
Sort by
Items per page

Send to

Choose Destination

Best matches for Hildén K[au]:

Search results

Items: 1 to 50 of 104

1.

A comparison between the homocyclic aromatic metabolic pathways from plant-derived compounds by bacteria and fungi.

Lubbers RJM, Dilokpimol A, Visser J, Mäkelä MR, Hildén KS, de Vries RP.

Biotechnol Adv. 2019 May 7. pii: S0734-9750(19)30077-1. doi: 10.1016/j.biotechadv.2019.05.002. [Epub ahead of print] Review.

PMID:
31075306
2.

Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens.

Casado López S, Peng M, Daly P, Andreopoulos B, Pangilinan J, Lipzen A, Riley R, Ahrendt S, Ng V, Barry K, Daum C, Grigoriev IV, Hildén KS, Mäkelä MR, de Vries RP.

Microbiol Resour Announc. 2019 May 2;8(18). pii: e00264-19. doi: 10.1128/MRA.00264-19.

3.

Developments and opportunities in fungal strain engineering for the production of novel enzymes and enzyme cocktails for plant biomass degradation.

Kun RS, Gomes ACS, Hildén KS, Salazar Cerezo S, Mäkelä MR, de Vries RP.

Biotechnol Adv. 2019 Feb 27:107361. doi: 10.1016/j.biotechadv.2019.02.017. [Epub ahead of print] Review.

PMID:
30825514
4.

Gestational diabetes and adiposity are independent risk factors for perinatal outcomes: a population based cohort study in Sweden.

Hildén K, Hanson U, Persson M, Magnuson A, Simmons D, Fadl H.

Diabet Med. 2019 Feb;36(2):151-157. doi: 10.1111/dme.13843.

5.

Pregnancy As a Risk Factor for Small Bowel Obstruction After Laparoscopic Gastric Bypass Surgery.

Stenberg E, Chen R, Hildén K, Fall K.

Ann Surg. 2018 Dec 20. doi: 10.1097/SLA.0000000000003163. [Epub ahead of print]

PMID:
30601250
6.

Genomic and exoproteomic diversity in plant biomass degradation approaches among Aspergilli.

Mäkelä MR, DiFalco M, McDonnell E, Nguyen TTM, Wiebenga A, Hildén K, Peng M, Grigoriev IV, Tsang A, de Vries RP.

Stud Mycol. 2018 Sep;91:79-99. doi: 10.1016/j.simyco.2018.09.001. Epub 2018 Oct 29.

7.

Selective Cleavage of Lignin β-O-4 Aryl Ether Bond by β-Etherase of the White-Rot Fungus Dichomitus squalens.

Marinović M, Nousiainen P, Dilokpimol A, Kontro J, Moore R, Sipilä J, de Vries RP, Mäkelä MR, Hildén K.

ACS Sustain Chem Eng. 2018 Mar 5;6(3):2878-2882. doi: 10.1021/acssuschemeng.7b03619. Epub 2018 Jan 25.

8.

Dichomitus squalens partially tailors its molecular responses to the composition of solid wood.

Daly P, López SC, Peng M, Lancefield CS, Purvine SO, Kim YM, Zink EM, Dohnalkova A, Singan VR, Lipzen A, Dilworth D, Wang M, Ng V, Robinson E, Orr G, Baker SE, Bruijnincx PCA, Hildén KS, Grigoriev IV, Mäkelä MR, de Vries RP.

Environ Microbiol. 2018 Nov;20(11):4141-4156. doi: 10.1111/1462-2920.14416. Epub 2018 Oct 18.

PMID:
30246402
9.

Efficient Extraction Method for High Quality Fungal RNA from Complex Lignocellulosic Substrates.

Mäkelä MR, Hildén K.

Methods Mol Biol. 2018;1775:69-73. doi: 10.1007/978-1-4939-7804-5_6.

PMID:
29876809
10.

Characterization of a feruloyl esterase from Aspergillus terreus facilitates the division of fungal enzymes from Carbohydrate Esterase family 1 of the carbohydrate-active enzymes (CAZy) database.

Mäkelä MR, Dilokpimol A, Koskela SM, Kuuskeri J, de Vries RP, Hildén K.

Microb Biotechnol. 2018 Sep;11(5):869-880. doi: 10.1111/1751-7915.13273. Epub 2018 Apr 26.

11.

Draft Genome Sequence of the Basidiomycete White-Rot Fungus Phlebia centrifuga.

Mäkelä MR, Peng M, Granchi Z, Chin-A-Woeng T, Hegi R, van Pelt SI, Ahrendt S, Riley R, Hainaut M, Henrissat B, Grigoriev IV, de Vries RP, Hildén KS.

Genome Announc. 2018 Apr 5;6(14). pii: e01414-17. doi: 10.1128/genomeA.01414-17.

12.

The physiology of Agaricus bisporus in semi-commercial compost cultivation appears to be highly conserved among unrelated isolates.

Pontes MVA, Patyshakuliyeva A, Post H, Jurak E, Hildén K, Altelaar M, Heck A, Kabel MA, de Vries RP, Mäkelä MR.

Fungal Genet Biol. 2018 Mar;112:12-20. doi: 10.1016/j.fgb.2017.12.004. Epub 2017 Dec 22.

13.

Fungal feruloyl esterases: Functional validation of genome mining based enzyme discovery including uncharacterized subfamilies.

Dilokpimol A, Mäkelä MR, Varriale S, Zhou M, Cerullo G, Gidijala L, Hinkka H, Brás JLA, Jütten P, Piechot A, Verhaert R, Hildén KS, Faraco V, de Vries RP.

N Biotechnol. 2018 Mar 25;41:9-14. doi: 10.1016/j.nbt.2017.11.004. Epub 2017 Nov 23.

PMID:
29174720
14.

Fungal glucuronoyl esterases: Genome mining based enzyme discovery and biochemical characterization.

Dilokpimol A, Mäkelä MR, Cerullo G, Zhou M, Varriale S, Gidijala L, Brás JLA, Jütten P, Piechot A, Verhaert R, Faraco V, Hilden KS, de Vries RP.

N Biotechnol. 2018 Jan 25;40(Pt B):282-287. doi: 10.1016/j.nbt.2017.10.003. Epub 2017 Oct 16.

PMID:
29051046
15.

Genetic transformation of the white-rot fungus Dichomitus squalens using a new commercial protoplasting cocktail.

Daly P, Slaghek GG, Casado López S, Wiebenga A, Hilden KS, de Vries RP, Mäkelä MR.

J Microbiol Methods. 2017 Dec;143:38-43. doi: 10.1016/j.mimet.2017.10.001. Epub 2017 Oct 4.

PMID:
28987554
16.

Comparative analysis of basidiomycete transcriptomes reveals a core set of expressed genes encoding plant biomass degrading enzymes.

Peng M, Aguilar-Pontes MV, Hainaut M, Henrissat B, Hildén K, Mäkelä MR, de Vries RP.

Fungal Genet Biol. 2018 Mar;112:40-46. doi: 10.1016/j.fgb.2017.08.001. Epub 2017 Aug 10.

17.

Temporal transcriptome analysis of the white-rot fungus Obba rivulosa shows expression of a constitutive set of plant cell wall degradation targeted genes during growth on solid spruce wood.

Marinović M, Aguilar-Pontes MV, Zhou M, Miettinen O, de Vries RP, Mäkelä MR, Hildén K.

Fungal Genet Biol. 2018 Mar;112:47-54. doi: 10.1016/j.fgb.2017.07.004. Epub 2017 Jul 25.

PMID:
28754284
18.

Expanding the feruloyl esterase gene family of Aspergillus niger by characterization of a feruloyl esterase, FaeC.

Dilokpimol A, Mäkelä MR, Mansouri S, Belova O, Waterstraat M, Bunzel M, de Vries RP, Hildén KS.

N Biotechnol. 2017 Jul 25;37(Pt B):200-209. doi: 10.1016/j.nbt.2017.02.007. Epub 2017 Mar 8.

PMID:
28285179
19.

Genome Sequence of the Basidiomycete White-Rot Fungus Trametes pubescens FBCC735.

Granchi Z, Peng M, Chi-A-Woeng T, de Vries RP, Hildén K, Mäkelä MR.

Genome Announc. 2017 Feb 23;5(8). pii: e01643-16. doi: 10.1128/genomeA.01643-16.

20.

The draft genome sequence of the ascomycete fungus Penicillium subrubescens reveals a highly enriched content of plant biomass related CAZymes compared to related fungi.

Peng M, Dilokpimol A, Mäkelä MR, Hildén K, Bervoets S, Riley R, Grigoriev IV, Hainaut M, Henrissat B, de Vries RP, Granchi Z.

J Biotechnol. 2017 Mar 20;246:1-3. doi: 10.1016/j.jbiotec.2017.02.012. Epub 2017 Feb 16.

21.

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.

de Vries RP, Riley R, Wiebenga A, Aguilar-Osorio G, Amillis S, Uchima CA, Anderluh G, Asadollahi M, Askin M, Barry K, Battaglia E, Bayram Ö, Benocci T, Braus-Stromeyer SA, Caldana C, Cánovas D, Cerqueira GC, Chen F, Chen W, Choi C, Clum A, Dos Santos RA, Damásio AR, Diallinas G, Emri T, Fekete E, Flipphi M, Freyberg S, Gallo A, Gournas C, Habgood R, Hainaut M, Harispe ML, Henrissat B, Hildén KS, Hope R, Hossain A, Karabika E, Karaffa L, Karányi Z, Kraševec N, Kuo A, Kusch H, LaButti K, Lagendijk EL, Lapidus A, Levasseur A, Lindquist E, Lipzen A, Logrieco AF, MacCabe A, Mäkelä MR, Malavazi I, Melin P, Meyer V, Mielnichuk N, Miskei M, Molnár ÁP, Mulé G, Ngan CY, Orejas M, Orosz E, Ouedraogo JP, Overkamp KM, Park HS, Perrone G, Piumi F, Punt PJ, Ram AF, Ramón A, Rauscher S, Record E, Riaño-Pachón DM, Robert V, Röhrig J, Ruller R, Salamov A, Salih NS, Samson RA, Sándor E, Sanguinetti M, Schütze T, Sepčić K, Shelest E, Sherlock G, Sophianopoulou V, Squina FM, Sun H, Susca A, Todd RB, Tsang A, Unkles SE, van de Wiele N, van Rossen-Uffink D, Oliveira JV, Vesth TC, Visser J, Yu JH, Zhou M, Andersen MR, Archer DB, Baker SE, Benoit I, Brakhage AA, Braus GH, Fischer R, Frisvad JC, Goldman GH, Houbraken J, Oakley B, Pócsi I, Scazzocchio C, Seiboth B, vanKuyk PA, Wortman J, Dyer PS, Grigoriev IV.

Genome Biol. 2017 Feb 14;18(1):28. doi: 10.1186/s13059-017-1151-0.

22.

Fungal Ligninolytic Enzymes and Their Applications.

Mäkelä MR, Bredeweg EL, Magnuson JK, Baker SE, de Vries RP, Hildén K.

Microbiol Spectr. 2016 Dec;4(6). doi: 10.1128/microbiolspec.FUNK-0017-2016. Review.

PMID:
28087936
23.

The molecular response of the white-rot fungus Dichomitus squalens to wood and non-woody biomass as examined by transcriptome and exoproteome analyses.

Rytioja J, Hildén K, Di Falco M, Zhou M, Aguilar-Pontes MV, Sietiö OM, Tsang A, de Vries RP, Mäkelä MR.

Environ Microbiol. 2017 Mar;19(3):1237-1250. doi: 10.1111/1462-2920.13652. Epub 2017 Jan 23.

PMID:
28028889
24.

Diversity of fungal feruloyl esterases: updated phylogenetic classification, properties, and industrial applications.

Dilokpimol A, Mäkelä MR, Aguilar-Pontes MV, Benoit-Gelber I, Hildén KS, de Vries RP.

Biotechnol Biofuels. 2016 Oct 28;9:231. eCollection 2016. Review.

25.

Penicillium subrubescens is a promising alternative for Aspergillus niger in enzymatic plant biomass saccharification.

Mäkelä MR, Mansouri S, Wiebenga A, Rytioja J, de Vries RP, Hildén KS.

N Biotechnol. 2016 Dec 25;33(6):834-841. doi: 10.1016/j.nbt.2016.07.014. Epub 2016 Jul 25.

PMID:
27469436
26.

Draft Genome Sequence of the White-Rot Fungus Obba rivulosa 3A-2.

Miettinen O, Riley R, Barry K, Cullen D, de Vries RP, Hainaut M, Hatakka A, Henrissat B, Hildén K, Kuo R, LaButti K, Lipzen A, Mäkelä MR, Sandor L, Spatafora JW, Grigoriev IV, Hibbett DS.

Genome Announc. 2016 Sep 15;4(5). pii: e00976-16. doi: 10.1128/genomeA.00976-16.

27.

Overweight and obesity: a remaining problem in women treated for severe gestational diabetes.

Hildén K, Hanson U, Persson M, Fadl H.

Diabet Med. 2016 Aug;33(8):1045-51. doi: 10.1111/dme.13156. Epub 2016 Jun 13.

28.

Saccharification of Lignocelluloses by Carbohydrate Active Enzymes of the White Rot Fungus Dichomitus squalens.

Rytioja J, Hildén K, Mäkinen S, Vehmaanperä J, Hatakka A, Mäkelä MR.

PLoS One. 2015 Dec 14;10(12):e0145166. doi: 10.1371/journal.pone.0145166. eCollection 2015.

29.

Closely related fungi employ diverse enzymatic strategies to degrade plant biomass.

Benoit I, Culleton H, Zhou M, DiFalco M, Aguilar-Osorio G, Battaglia E, Bouzid O, Brouwer CPJM, El-Bushari HBO, Coutinho PM, Gruben BS, Hildén KS, Houbraken J, Barboza LAJ, Levasseur A, Majoor E, Mäkelä MR, Narang HM, Trejo-Aguilar B, van den Brink J, vanKuyk PA, Wiebenga A, McKie V, McCleary B, Tsang A, Henrissat B, de Vries RP.

Biotechnol Biofuels. 2015 Aug 1;8:107. doi: 10.1186/s13068-015-0285-0. eCollection 2015.

30.

Uncovering the abilities of Agaricus bisporus to degrade plant biomass throughout its life cycle.

Patyshakuliyeva A, Post H, Zhou M, Jurak E, Heck AJ, Hildén KS, Kabel MA, Mäkelä MR, Altelaar MA, de Vries RP.

Environ Microbiol. 2015 Aug;17(8):3098-109. doi: 10.1111/1462-2920.12967. Epub 2015 Aug 4.

PMID:
26118398
31.

Aromatic metabolism of filamentous fungi in relation to the presence of aromatic compounds in plant biomass.

Mäkelä MR, Marinović M, Nousiainen P, Liwanag AJ, Benoit I, Sipilä J, Hatakka A, de Vries RP, Hildén KS.

Adv Appl Microbiol. 2015;91:63-137. doi: 10.1016/bs.aambs.2014.12.001. Epub 2015 Feb 24. Review.

PMID:
25911233
32.

Plant-polysaccharide-degrading enzymes from Basidiomycetes.

Rytioja J, Hildén K, Yuzon J, Hatakka A, de Vries RP, Mäkelä MR.

Microbiol Mol Biol Rev. 2014 Dec;78(4):614-49. doi: 10.1128/MMBR.00035-14. Review.

33.

An improved and reproducible protocol for the extraction of high quality fungal RNA from plant biomass substrates.

Patyshakuliyeva A, Mäkelä MR, Sietiö OM, de Vries RP, Hildén KS.

Fungal Genet Biol. 2014 Nov;72:201-206. doi: 10.1016/j.fgb.2014.06.001. Epub 2014 Jun 18.

PMID:
24951842
34.

Biochemical and molecular characterization of an atypical manganese peroxidase of the litter-decomposing fungus Agrocybe praecox.

Hildén K, Mäkelä MR, Steffen KT, Hofrichter M, Hatakka A, Archer DB, Lundell TK.

Fungal Genet Biol. 2014 Nov;72:131-136. doi: 10.1016/j.fgb.2014.03.002. Epub 2014 Mar 20.

PMID:
24657475
35.

Oxalate-metabolising genes of the white-rot fungus Dichomitus squalens are differentially induced on wood and at high proton concentration.

Mäkelä MR, Sietiö OM, de Vries RP, Timonen S, Hildén K.

PLoS One. 2014 Feb 5;9(2):e87959. doi: 10.1371/journal.pone.0087959. eCollection 2014.

36.

Transcriptional analysis of selected cellulose-acting enzymes encoding genes of the white-rot fungus Dichomitus squalens on spruce wood and microcrystalline cellulose.

Rytioja J, Hildén K, Hatakka A, Mäkelä MR.

Fungal Genet Biol. 2014 Nov;72:91-98. doi: 10.1016/j.fgb.2013.12.008. Epub 2014 Jan 3.

PMID:
24394946
37.

A comparative needle study: EUS-FNA procedures using the HD ProCore(™) and EchoTip(®) 22-gauge needle types.

Witt BL, Adler DG, Hilden K, Layfield LJ.

Diagn Cytopathol. 2013 Dec;41(12):1069-74. doi: 10.1002/dc.22971. Epub 2013 Mar 20.

PMID:
23513000
38.

Agaricus bisporus and related Agaricus species on lignocellulose: production of manganese peroxidase and multicopper oxidases.

Hildén K, Mäkelä MR, Lankinen P, Lundell T.

Fungal Genet Biol. 2013 Jun;55:32-41. doi: 10.1016/j.fgb.2013.02.002. Epub 2013 Feb 21.

PMID:
23454218
39.

Effect of copper, nutrient nitrogen, and wood-supplement on the production of lignin-modifying enzymes by the white-rot fungus Phlebia radiata.

Mäkelä MR, Lundell T, Hatakka A, Hildén K.

Fungal Biol. 2013 Jan;117(1):62-70. doi: 10.1016/j.funbio.2012.11.006. Epub 2012 Dec 13.

PMID:
23332834
40.

Response to Vianello et al.

Kawa C, Adler DG, Hilden K, Tietze C, Bromberg MB, Fang JC.

Nutr Clin Pract. 2013 Feb;28(1):144. doi: 10.1177/0884533612470699. No abstract available.

PMID:
23319357
41.

Self-expanding metal stents (SEMS) for preoperative biliary decompression in patients with resectable and borderline-resectable pancreatic cancer: outcomes in 241 patients.

Siddiqui AA, Mehendiratta V, Loren D, Kowalski T, Fang J, Hilden K, Adler DG.

Dig Dis Sci. 2013 Jun;58(6):1744-50. doi: 10.1007/s10620-012-2482-z. Epub 2012 Nov 21.

PMID:
23179157
42.

Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche.

Morin E, Kohler A, Baker AR, Foulongne-Oriol M, Lombard V, Nagy LG, Ohm RA, Patyshakuliyeva A, Brun A, Aerts AL, Bailey AM, Billette C, Coutinho PM, Deakin G, Doddapaneni H, Floudas D, Grimwood J, Hildén K, Kües U, Labutti KM, Lapidus A, Lindquist EA, Lucas SM, Murat C, Riley RW, Salamov AA, Schmutz J, Subramanian V, Wösten HA, Xu J, Eastwood DC, Foster GD, Sonnenberg AS, Cullen D, de Vries RP, Lundell T, Hibbett DS, Henrissat B, Burton KS, Kerrigan RW, Challen MP, Grigoriev IV, Martin F.

Proc Natl Acad Sci U S A. 2012 Oct 23;109(43):17501-6. doi: 10.1073/pnas.1206847109. Epub 2012 Oct 8. Erratum in: Proc Natl Acad Sci U S A. 2013 Mar 5;110(10):4146.

43.

Primary sclerosing cholangitis and distribution of inflammatory bowel disease.

Feurer ME, Hilden K, Adler DG.

Clin Gastroenterol Hepatol. 2012 Dec;10(12):1418; author reply 1418-9. doi: 10.1016/j.cgh.2012.07.008. Epub 2012 Jul 24. No abstract available.

PMID:
22835578
44.

Placement of fully covered self-expandable metal stents in patients with locally advanced esophageal cancer before neoadjuvant therapy.

Siddiqui AA, Sarkar A, Beltz S, Lewis J, Loren D, Kowalski T, Fang J, Hilden K, Adler DG.

Gastrointest Endosc. 2012 Jul;76(1):44-51. doi: 10.1016/j.gie.2012.02.036.

PMID:
22726465
45.

A retrospective study of nurse-assisted propofol sedation in patients with amyotrophic lateral sclerosis undergoing percutaneous endoscopic gastrostomy.

Kawa C, Stewart J, Hilden K, Adler DG, Tietze C, Bromberg MB, Fang JC.

Nutr Clin Pract. 2012 Aug;27(4):540-4. doi: 10.1177/0884533612443712. Epub 2012 May 29.

PMID:
22645103
46.

Heterologous expression and structural characterization of two low pH laccases from a biopulping white-rot fungus Physisporinus rivulosus.

Hildén K, Mäkelä MR, Lundell T, Kuuskeri J, Chernykh A, Golovleva L, Archer DB, Hatakka A.

Appl Microbiol Biotechnol. 2013 Feb;97(4):1589-99. doi: 10.1007/s00253-012-4011-6. Epub 2012 Apr 12.

PMID:
22526780
47.

Combined ERCP and EUS in one session is safe in elderly patients when compared to non-elderly patients: outcomes in 206 combined procedures.

Iles-Shih L, Hilden K, Adler DG.

Dig Dis Sci. 2012 Jul;57(7):1949-53. doi: 10.1007/s10620-012-2135-2. Epub 2012 Mar 28.

PMID:
22453997
48.

A retrospective correlation of percutaneous feeding tube stoma length in sitting and supine positions compared with body mass index.

Steenblik M, Hilden K, Fang JC.

Nutr Clin Pract. 2012 Jun;27(3):406-9. doi: 10.1177/0884533612438406. Epub 2012 Mar 7.

PMID:
22402408
49.

Incidental pancreatography via ERCP in patients with anomalous pancreaticobiliary junction does not result in pancreatitis in a North American population.

Alkhatib AA, Hilden K, Adler DG.

Dig Dis Sci. 2012 Apr;57(4):1064-8. doi: 10.1007/s10620-011-1964-8. Epub 2011 Nov 12.

PMID:
22080418
50.

Enterocolic lymphocytic phlebitis presenting as an intussuscepting cecal mass.

Nallamothu G, Hilden K, Karnam U, Adler DG.

Am J Gastroenterol. 2011 Nov;106(11):2049-50. doi: 10.1038/ajg.2011.244. No abstract available.

PMID:
22056589

Supplemental Content

Loading ...
Support Center