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Items: 1 to 50 of 55

1.

Gut Microbiome-Based Metagenomic Signature for Non-invasive Detection of Advanced Fibrosis in Human Nonalcoholic Fatty Liver Disease.

Loomba R, Seguritan V, Li W, Long T, Klitgord N, Bhatt A, Dulai PS, Caussy C, Bettencourt R, Highlander SK, Jones MB, Sirlin CB, Schnabl B, Brinkac L, Schork N, Chen CH, Brenner DA, Biggs W, Yooseph S, Venter JC, Nelson KE.

Cell Metab. 2019 Sep 3;30(3):607. doi: 10.1016/j.cmet.2019.08.002. No abstract available.

PMID:
31484056
2.

Supragingival Plaque Microbiome Ecology and Functional Potential in the Context of Health and Disease.

Espinoza JL, Harkins DM, Torralba M, Gomez A, Highlander SK, Jones MB, Leong P, Saffery R, Bockmann M, Kuelbs C, Inman JM, Hughes T, Craig JM, Nelson KE, Dupont CL.

MBio. 2018 Nov 27;9(6). pii: e01631-18. doi: 10.1128/mBio.01631-18.

3.

Visualization-assisted binning of metagenome assemblies reveals potential new pathogenic profiles in idiopathic travelers' diarrhea.

Zhu Q, Dupont CL, Jones MB, Pham KM, Jiang ZD, DuPont HL, Highlander SK.

Microbiome. 2018 Nov 8;6(1):201. doi: 10.1186/s40168-018-0579-0.

4.

Host Genetic Control of the Oral Microbiome in Health and Disease.

Gomez A, Espinoza JL, Harkins DM, Leong P, Saffery R, Bockmann M, Torralba M, Kuelbs C, Kodukula R, Inman J, Hughes T, Craig JM, Highlander SK, Jones MB, Dupont CL, Nelson KE.

Cell Host Microbe. 2017 Sep 13;22(3):269-278.e3. doi: 10.1016/j.chom.2017.08.013.

5.

Gut Microbiome-Based Metagenomic Signature for Non-invasive Detection of Advanced Fibrosis in Human Nonalcoholic Fatty Liver Disease.

Loomba R, Seguritan V, Li W, Long T, Klitgord N, Bhatt A, Dulai PS, Caussy C, Bettencourt R, Highlander SK, Jones MB, Sirlin CB, Schnabl B, Brinkac L, Schork N, Chen CH, Brenner DA, Biggs W, Yooseph S, Venter JC, Nelson KE.

Cell Metab. 2017 May 2;25(5):1054-1062.e5. doi: 10.1016/j.cmet.2017.04.001. Erratum in: Cell Metab. 2019 Sep 3;30(3):607.

6.

A robust ambient temperature collection and stabilization strategy: Enabling worldwide functional studies of the human microbiome.

Anderson EL, Li W, Klitgord N, Highlander SK, Dayrit M, Seguritan V, Yooseph S, Biggs W, Venter JC, Nelson KE, Jones MB.

Sci Rep. 2016 Aug 25;6:31731. doi: 10.1038/srep31731.

7.

Gastrointestinal microbial populations can distinguish pediatric and adolescent Acute Lymphoblastic Leukemia (ALL) at the time of disease diagnosis.

Rajagopala SV, Yooseph S, Harkins DM, Moncera KJ, Zabokrtsky KB, Torralba MG, Tovchigrechko A, Highlander SK, Pieper R, Sender L, Nelson KE.

BMC Genomics. 2016 Aug 15;17(1):635. doi: 10.1186/s12864-016-2965-y.

8.

Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system.

Schloss PD, Jenior ML, Koumpouras CC, Westcott SL, Highlander SK.

PeerJ. 2016 Mar 28;4:e1869. doi: 10.7717/peerj.1869. eCollection 2016.

9.

Library preparation methodology can influence genomic and functional predictions in human microbiome research.

Jones MB, Highlander SK, Anderson EL, Li W, Dayrit M, Klitgord N, Fabani MM, Seguritan V, Green J, Pride DT, Yooseph S, Biggs W, Nelson KE, Venter JC.

Proc Natl Acad Sci U S A. 2015 Nov 10;112(45):14024-9. doi: 10.1073/pnas.1519288112. Epub 2015 Oct 28.

10.

Acylation Enhances, but Is Not Required for, the Cytotoxic Activity of Mannheimia haemolytica Leukotoxin in Bighorn Sheep.

Batra SA, Shanthalingam S, Munske GR, Raghavan B, Kugadas A, Bavanthasivam J, Highlander SK, Srikumaran S.

Infect Immun. 2015 Oct;83(10):3982-8. doi: 10.1128/IAI.00733-15. Epub 2015 Jul 27.

11.

Extreme Sensory Complexity Encoded in the 10-Megabase Draft Genome Sequence of the Chromatically Acclimating Cyanobacterium Tolypothrix sp. PCC 7601.

Yerrapragada S, Shukla A, Hallsworth-Pepin K, Choi K, Wollam A, Clifton S, Qin X, Muzny D, Raghuraman S, Ashki H, Uzman A, Highlander SK, Fryszczyn BG, Fox GE, Tirumalai MR, Liu Y, Kim S, Kehoe DM, Weinstock GM.

Genome Announc. 2015 May 7;3(3). pii: e00355-15. doi: 10.1128/genomeA.00355-15.

12.

Characterization of the human gut microbiome during travelers' diarrhea.

Youmans BP, Ajami NJ, Jiang ZD, Campbell F, Wadsworth WD, Petrosino JF, DuPont HL, Highlander SK.

Gut Microbes. 2015;6(2):110-9. doi: 10.1080/19490976.2015.1019693.

13.

Molecular and evolutionary analysis of NEAr-iron Transporter (NEAT) domains.

Honsa ES, Maresso AW, Highlander SK.

PLoS One. 2014 Aug 25;9(8):e104794. doi: 10.1371/journal.pone.0104794. eCollection 2014.

14.

From prediction to function using evolutionary genomics: human-specific ecotypes of Lactobacillus reuteri have diverse probiotic functions.

Spinler JK, Sontakke A, Hollister EB, Venable SF, Oh PL, Balderas MA, Saulnier DM, Mistretta TA, Devaraj S, Walter J, Versalovic J, Highlander SK.

Genome Biol Evol. 2014 Jun 19;6(7):1772-89. doi: 10.1093/gbe/evu137.

15.

Phylogenomics and the dynamic genome evolution of the genus Streptococcus.

Richards VP, Palmer SR, Pavinski Bitar PD, Qin X, Weinstock GM, Highlander SK, Town CD, Burne RA, Stanhope MJ.

Genome Biol Evol. 2014 Apr;6(4):741-53. doi: 10.1093/gbe/evu048.

16.
17.

Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform.

Kozich JJ, Westcott SL, Baxter NT, Highlander SK, Schloss PD.

Appl Environ Microbiol. 2013 Sep;79(17):5112-20. doi: 10.1128/AEM.01043-13. Epub 2013 Jun 21.

18.

High throughput sequencing methods for microbiome profiling: application to food animal systems.

Highlander SK.

Anim Health Res Rev. 2012 Jun;13(1):40-53. doi: 10.1017/S1466252312000126. Review.

PMID:
22853944
19.

A snap-shot of Mannheimia hemolytica A1 gene expression during infection in the bovine host.

Sathiamoorthy S, Hodgins DC, Shewen PE, Highlander SK, Lo RY.

FEMS Microbiol Lett. 2011 Dec;325(2):148-54. doi: 10.1111/j.1574-6968.2011.02422.x.

20.

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons.

Haas BJ, Gevers D, Earl AM, Feldgarden M, Ward DV, Giannoukos G, Ciulla D, Tabbaa D, Highlander SK, Sodergren E, Methé B, DeSantis TZ; Human Microbiome Consortium, Petrosino JF, Knight R, Birren BW.

Genome Res. 2011 Mar;21(3):494-504. doi: 10.1101/gr.112730.110. Epub 2011 Jan 6.

21.

Comparative genomics of Gardnerella vaginalis strains reveals substantial differences in metabolic and virulence potential.

Yeoman CJ, Yildirim S, Thomas SM, Durkin AS, Torralba M, Sutton G, Buhay CJ, Ding Y, Dugan-Rocha SP, Muzny DM, Qin X, Gibbs RA, Leigh SR, Stumpf R, White BA, Highlander SK, Nelson KE, Wilson BA.

PLoS One. 2010 Aug 26;5(8):e12411. doi: 10.1371/journal.pone.0012411.

22.

Transmission of Mannheimia haemolytica from domestic sheep (Ovis aries) to bighorn sheep (Ovis canadensis): unequivocal demonstration with green fluorescent protein-tagged organisms.

Lawrence PK, Shanthalingam S, Dassanayake RP, Subramaniam R, Herndon CN, Knowles DP, Rurangirwa FR, Foreyt WJ, Wayman G, Marciel AM, Highlander SK, Srikumaran S.

J Wildl Dis. 2010 Jul;46(3):706-17. Erratum in: J Wildl Dis. 2010 Oct;46(4):1346-7.

PMID:
20688676
23.

A catalog of reference genomes from the human microbiome.

Human Microbiome Jumpstart Reference Strains Consortium, Nelson KE, Weinstock GM, Highlander SK, Worley KC, Creasy HH, Wortman JR, Rusch DB, Mitreva M, Sodergren E, Chinwalla AT, Feldgarden M, Gevers D, Haas BJ, Madupu R, Ward DV, Birren BW, Gibbs RA, Methe B, Petrosino JF, Strausberg RL, Sutton GG, White OR, Wilson RK, Durkin S, Giglio MG, Gujja S, Howarth C, Kodira CD, Kyrpides N, Mehta T, Muzny DM, Pearson M, Pepin K, Pati A, Qin X, Yandava C, Zeng Q, Zhang L, Berlin AM, Chen L, Hepburn TA, Johnson J, McCorrison J, Miller J, Minx P, Nusbaum C, Russ C, Sykes SM, Tomlinson CM, Young S, Warren WC, Badger J, Crabtree J, Markowitz VM, Orvis J, Cree A, Ferriera S, Fulton LL, Fulton RS, Gillis M, Hemphill LD, Joshi V, Kovar C, Torralba M, Wetterstrand KA, Abouellleil A, Wollam AM, Buhay CJ, Ding Y, Dugan S, FitzGerald MG, Holder M, Hostetler J, Clifton SW, Allen-Vercoe E, Earl AM, Farmer CN, Liolios K, Surette MG, Xu Q, Pohl C, Wilczek-Boney K, Zhu D.

Science. 2010 May 21;328(5981):994-9. doi: 10.1126/science.1183605.

24.

Large scale variation in Enterococcus faecalis illustrated by the genome analysis of strain OG1RF.

Bourgogne A, Garsin DA, Qin X, Singh KV, Sillanpaa J, Yerrapragada S, Ding Y, Dugan-Rocha S, Buhay C, Shen H, Chen G, Williams G, Muzny D, Maadani A, Fox KA, Gioia J, Chen L, Shang Y, Arias CA, Nallapareddy SR, Zhao M, Prakash VP, Chowdhury S, Jiang H, Gibbs RA, Murray BE, Highlander SK, Weinstock GM.

Genome Biol. 2008;9(7):R110. doi: 10.1186/gb-2008-9-7-r110. Epub 2008 Jul 8.

25.

Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus.

Highlander SK, Hultén KG, Qin X, Jiang H, Yerrapragada S, Mason EO Jr, Shang Y, Williams TM, Fortunov RM, Liu Y, Igboeli O, Petrosino J, Tirumalai M, Uzman A, Fox GE, Cardenas AM, Muzny DM, Hemphill L, Ding Y, Dugan S, Blyth PR, Buhay CJ, Dinh HH, Hawes AC, Holder M, Kovar CL, Lee SL, Liu W, Nazareth LV, Wang Q, Zhou J, Kaplan SL, Weinstock GM.

BMC Microbiol. 2007 Nov 6;7:99.

26.

Paradoxical DNA repair and peroxide resistance gene conservation in Bacillus pumilus SAFR-032.

Gioia J, Yerrapragada S, Qin X, Jiang H, Igboeli OC, Muzny D, Dugan-Rocha S, Ding Y, Hawes A, Liu W, Perez L, Kovar C, Dinh H, Lee S, Nazareth L, Blyth P, Holder M, Buhay C, Tirumalai MR, Liu Y, Dasgupta I, Bokhetache L, Fujita M, Karouia F, Eswara Moorthy P, Siefert J, Uzman A, Buzumbo P, Verma A, Zwiya H, McWilliams BD, Olowu A, Clinkenbeard KD, Newcombe D, Golebiewski L, Petrosino JF, Nicholson WL, Fox GE, Venkateswaran K, Highlander SK, Weinstock GM.

PLoS One. 2007 Sep 26;2(9):e928.

27.

Genome sequence of Fusobacterium nucleatum subspecies polymorphum - a genetically tractable fusobacterium.

Karpathy SE, Qin X, Gioia J, Jiang H, Liu Y, Petrosino JF, Yerrapragada S, Fox GE, Haake SK, Weinstock GM, Highlander SK.

PLoS One. 2007 Aug 1;2(7):e659.

28.

Identification and characterization of transcriptional regulation of the Mannheimia haemolytica ferric uptake regulator.

Gioia J, Highlander SK.

Vet Microbiol. 2007 Oct 6;124(3-4):298-309. Epub 2007 Apr 29.

PMID:
17544233
29.

The genome sequence of Mannheimia haemolytica A1: insights into virulence, natural competence, and Pasteurellaceae phylogeny.

Gioia J, Qin X, Jiang H, Clinkenbeard K, Lo R, Liu Y, Fox GE, Yerrapragada S, McLeod MP, McNeill TZ, Hemphill L, Sodergren E, Wang Q, Muzny DM, Homsi FJ, Weinstock GM, Highlander SK.

J Bacteriol. 2006 Oct;188(20):7257-66.

30.

Complete nucleotide sequence of a P2 family lysogenic bacteriophage, varphiMhaA1-PHL101, from Mannheimia haemolytica serotype A1.

Highlander SK, Weissenberger S, Alvarez LE, Weinstock GM, Berget PB.

Virology. 2006 Jun 20;350(1):79-89. Epub 2006 May 2.

31.

Complete genome sequence of Rickettsia typhi and comparison with sequences of other rickettsiae.

McLeod MP, Qin X, Karpathy SE, Gioia J, Highlander SK, Fox GE, McNeill TZ, Jiang H, Muzny D, Jacob LS, Hawes AC, Sodergren E, Gill R, Hume J, Morgan M, Fan G, Amin AG, Gibbs RA, Hong C, Yu XJ, Walker DH, Weinstock GM.

J Bacteriol. 2004 Sep;186(17):5842-55.

33.

Molecular genetic analysis of virulence in Mannheimia (pasteurella) haemolytica.

Highlander SK.

Front Biosci. 2001 Sep 1;6:D1128-50. Review.

PMID:
11532607
34.

Inactivation of Pasteurella (Mannheimia) haemolytica leukotoxin causes partial attenuation of virulence in a calf challenge model.

Highlander SK, Fedorova ND, Dusek DM, Panciera R, Alvarez LE, Rinehart C.

Infect Immun. 2000 Jul;68(7):3916-22.

35.

Ultrastructural characterization of apoptosis in bovine lymphocytes exposed to Pasteurella haemolytica leukotoxin.

Sun Y, Clinkenbeard KD, Ownby CL, Cudd L, Clarke CR, Highlander SK.

Am J Vet Res. 2000 Jan;61(1):51-6.

PMID:
10630778
36.

Pasteurella haemolytica leukotoxin induced apoptosis of bovine lymphocytes involves DNA fragmentation.

Sun Y, Clinkenbeard KD, Clarke C, Cudd L, Highlander SK, Dabo SM.

Vet Microbiol. 1999 Mar 1;65(2):153-66.

PMID:
10078599
37.

Actin polymerization enhances Pasteurella haemolytica leukotoxicity.

Basaraba RJ, Byerly AN, Mosier DA, Butine MD, Stewart GC, Fenwick BW, Chengappa MM, Highlander SK.

Vet Microbiol. 1999 Feb 12;64(4):307-21.

PMID:
10063536
39.
41.

Plasmids for heterologous expression in Pasteurella haemolytica.

Fedorova ND, Highlander SK.

Gene. 1997 Feb 28;186(2):207-11.

PMID:
9074498
42.

Isolation and characterization of the integration host factor genes of Pasteurella haemolytica.

Highlander SK, Garza O, Brown BJ, Koby S, Oppenheim AB.

FEMS Microbiol Lett. 1997 Jan 15;146(2):181-8.

43.
44.

Binding-protein-dependent arginine transport in Pasteurella haemolytica.

Caskey LS, Lamphear JG, Highlander SK.

Microbiology. 1996 Jul;142 ( Pt 7):1739-47.

PMID:
8757738
46.

Expression of the Pasteurella haemolytica leukotoxin is inhibited by a locus that encodes an ATP-binding cassette homolog.

Highlander SK, Wickersham EA, Garza O, Weinstock GM.

Infect Immun. 1993 Sep;61(9):3942-51. Erratum in: Infect Immun 1993 Dec;61(12):5431.

47.

Mutation of the disulfide loop in staphylococcal enterotoxin A. Consequences for T cell recognition.

Grossman D, Van M, Mollick JA, Highlander SK, Rich RR.

J Immunol. 1991 Nov 15;147(10):3274-81.

PMID:
1834733
48.

Secretion and expression of the Pasteurella haemolytica Leukotoxin.

Highlander SK, Engler MJ, Weinstock GM.

J Bacteriol. 1990 May;172(5):2343-50.

49.
50.

DNA sequence of the Pasteurella haemolytica leukotoxin gene cluster.

Highlander SK, Chidambaram M, Engler MJ, Weinstock GM.

DNA. 1989 Jan-Feb;8(1):15-28.

PMID:
2707120

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