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Items: 31

1.

Genes regulated by branched-chain polyamine in the hyperthermophilic archaeon Thermococcus kodakarensis.

Fukuda W, Yamori Y, Hamakawa M, Osaki M, Fukuda M, Hidese R, Kanesaki Y, Okamoto-Kainuma A, Kato S, Fujiwara S.

Amino Acids. 2019 Oct 16. doi: 10.1007/s00726-019-02793-4. [Epub ahead of print]

PMID:
31621031
2.

The C-terminal flexible region of branched-chain polyamine synthase facilitates substrate specificity and catalysis.

Hidese R, Toyoda M, Yoshino KI, Fukuda W, Wihardja GA, Kimura S, Fujita J, Niitsu M, Oshima T, Imanaka T, Mizohata E, Fujiwara S.

FEBS J. 2019 Oct;286(19):3926-3940. doi: 10.1111/febs.14949. Epub 2019 Jun 21.

PMID:
31162806
3.

Branched-chain polyamine stabilizes RNA polymerase at elevated temperatures in hyperthermophiles.

Yamori Y, Hamakawa M, Hidese R, Fukuda M, Atomi H, Fukuda W, Fujiwara S.

Amino Acids. 2019 May 17. doi: 10.1007/s00726-019-02745-y. [Epub ahead of print]

PMID:
31101997
4.

Increased flux in acetyl-CoA synthetic pathway and TCA cycle of Kluyveromyces marxianus under respiratory conditions.

Sakihama Y, Hidese R, Hasunuma T, Kondo A.

Sci Rep. 2019 Mar 29;9(1):5319. doi: 10.1038/s41598-019-41863-1.

5.

Accurate fidelity analysis of the reverse transcriptase by a modified next-generation sequencing.

Okano H, Baba M, Hidese R, Iida K, Li T, Kojima K, Takita T, Yanagihara I, Fujiwara S, Yasukawa K.

Enzyme Microb Technol. 2018 Aug;115:81-85. doi: 10.1016/j.enzmictec.2018.05.001. Epub 2018 May 3.

PMID:
29859606
6.

Agmatine Production by Aspergillus oryzae Is Elevated by Low pH during Solid-State Cultivation.

Akasaka N, Kato S, Kato S, Hidese R, Wagu Y, Sakoda H, Fujiwara S.

Appl Environ Microbiol. 2018 Jul 17;84(15). pii: e00722-18. doi: 10.1128/AEM.00722-18. Print 2018 Aug 1.

7.

Thermostable DNA helicase improves the sensitivity of digital PCR.

Hidese R, Kawato K, Nakura Y, Fujiwara A, Yasukawa K, Yanagihara I, Fujiwara S.

Biochem Biophys Res Commun. 2018 Jan 15;495(3):2189-2194. doi: 10.1016/j.bbrc.2017.12.053. Epub 2017 Dec 9.

PMID:
29233693
8.

High sensitive RNA detection by one-step RT-PCR using the genetically engineered variant of DNA polymerase with reverse transcriptase activity from hyperthermophilies.

Okano H, Baba M, Kawato K, Hidese R, Yanagihara I, Kojima K, Takita T, Fujiwara S, Yasukawa K.

J Biosci Bioeng. 2018 Mar;125(3):275-281. doi: 10.1016/j.jbiosc.2017.10.004.

PMID:
29100684
9.

Identification of Branched-Chain Polyamines in Hyperthermophiles.

Hidese R, Fukuda W, Niitsu M, Fujiwara S.

Methods Mol Biol. 2018;1694:81-94. doi: 10.1007/978-1-4939-7398-9_8.

PMID:
29080158
10.

Active site geometry of a novel aminopropyltransferase for biosynthesis of hyperthermophile-specific branched-chain polyamine.

Hidese R, Tse KM, Kimura S, Mizohata E, Fujita J, Horai Y, Umezawa N, Higuchi T, Niitsu M, Oshima T, Imanaka T, Inoue T, Fujiwara S.

FEBS J. 2017 Nov;284(21):3684-3701. doi: 10.1111/febs.14262. Epub 2017 Sep 22.

11.

Leucine responsive regulatory protein is involved in methionine metabolism and polyamine homeostasis in acetic acid bacterium Komagataeibacter europaeus.

Ishii Y, Akasaka N, Sakoda H, Hidese R, Fujiwara S.

J Biosci Bioeng. 2018 Jan;125(1):67-75. doi: 10.1016/j.jbiosc.2017.07.017. Epub 2017 Sep 1.

PMID:
28867618
12.

Next-generation sequencing-based analysis of reverse transcriptase fidelity.

Yasukawa K, Iida K, Okano H, Hidese R, Baba M, Yanagihara I, Kojima K, Takita T, Fujiwara S.

Biochem Biophys Res Commun. 2017 Oct 14;492(2):147-153. doi: 10.1016/j.bbrc.2017.07.169. Epub 2017 Aug 1.

PMID:
28778390
13.

Gene regulation of two ferredoxin:NADP+ oxidoreductases by the redox-responsive regulator SurR in Thermococcus kodakarensis.

Hidese R, Yamashita K, Kawazuma K, Kanai T, Atomi H, Imanaka T, Fujiwara S.

Extremophiles. 2017 Sep;21(5):903-917. doi: 10.1007/s00792-017-0952-0. Epub 2017 Jul 7.

PMID:
28688056
14.

Identification of a novel acetylated form of branched-chain polyamine from a hyperthermophilic archaeon Thermococcus kodakarensis.

Hidese R, Im KH, Kobayashi M, Niitsu M, Furuchi T, Fujiwara S.

Biosci Biotechnol Biochem. 2017 Sep;81(9):1845-1849. doi: 10.1080/09168451.2017.1345616. Epub 2017 Jul 5.

PMID:
28678603
15.

Function of a thermophilic archaeal chaperonin is enhanced by electrostatic interactions with its targets.

Gao L, Hidese R, Fujiwara S.

J Biosci Bioeng. 2017 Sep;124(3):283-288. doi: 10.1016/j.jbiosc.2017.04.008. Epub 2017 May 8.

PMID:
28495561
16.

High sensitive one-step RT-PCR using MMLV reverse transcriptase, DNA polymerase with reverse transcriptase activity, and DNA/RNA helicase.

Okano H, Baba M, Yamasaki T, Hidese R, Fujiwara S, Yanagihara I, Ujiiye T, Hayashi T, Kojima K, Takita T, Yasukawa K.

Biochem Biophys Res Commun. 2017 May 20;487(1):128-133. doi: 10.1016/j.bbrc.2017.04.030. Epub 2017 Apr 8. No abstract available.

PMID:
28400277
17.

Enhanced detection of RNA by MMLV reverse transcriptase coupled with thermostable DNA polymerase and DNA/RNA helicase.

Okano H, Katano Y, Baba M, Fujiwara A, Hidese R, Fujiwara S, Yanagihara I, Hayashi T, Kojima K, Takita T, Yasukawa K.

Enzyme Microb Technol. 2017 Jan;96:111-120. doi: 10.1016/j.enzmictec.2016.10.003. Epub 2016 Oct 11.

PMID:
27871370
18.

Application of a Euryarchaeota-Specific Helicase from Thermococcus kodakarensis for Noise Reduction in PCR.

Fujiwara A, Kawato K, Kato S, Yasukawa K, Hidese R, Fujiwara S.

Appl Environ Microbiol. 2016 May 2;82(10):3022-3031. doi: 10.1128/AEM.04116-15. Print 2016 May 15.

19.

CuI and H2 O2 Inactivate and FeII Inhibits [Fe]-Hydrogenase at Very Low Concentrations.

Hidese R, Ataka K, Bill E, Shima S.

Chembiochem. 2015 Sep 7;16(13):1861-1865. doi: 10.1002/cbic.201500318. Epub 2015 Jul 23.

PMID:
26136368
20.

Change in the plasmid copy number in acetic acid bacteria in response to growth phase and acetic acid concentration.

Akasaka N, Astuti W, Ishii Y, Hidese R, Sakoda H, Fujiwara S.

J Biosci Bioeng. 2015 Jun;119(6):661-8. doi: 10.1016/j.jbiosc.2014.11.003. Epub 2015 Jan 6.

PMID:
25575969
21.

Enhanced production of branched-chain amino acids by Gluconacetobacter europaeus with a specific regional deletion in a leucine responsive regulator.

Akasaka N, Ishii Y, Hidese R, Sakoda H, Fujiwara S.

J Biosci Bioeng. 2014 Dec;118(6):607-15. doi: 10.1016/j.jbiosc.2014.05.024. Epub 2014 Jun 27.

PMID:
24985571
22.

Cysteine desulphurase plays an important role in environmental adaptation of the hyperthermophilic archaeon Thermococcus kodakarensis.

Hidese R, Inoue T, Imanaka T, Fujiwara S.

Mol Microbiol. 2014 Jul;93(2):331-45. doi: 10.1111/mmi.12662. Epub 2014 Jun 24.

23.

Different roles of two transcription factor B proteins in the hyperthermophilic archaeon Thermococcus kodakarensis.

Hidese R, Nishikawa R, Gao L, Katano M, Imai T, Kato S, Kanai T, Atomi H, Imanaka T, Fujiwara S.

Extremophiles. 2014 May;18(3):573-88. doi: 10.1007/s00792-014-0638-9. Epub 2014 Mar 14.

PMID:
24627188
24.

Identification of a novel aminopropyltransferase involved in the synthesis of branched-chain polyamines in hyperthermophiles.

Okada K, Hidese R, Fukuda W, Niitsu M, Takao K, Horai Y, Umezawa N, Higuchi T, Oshima T, Yoshikawa Y, Imanaka T, Fujiwara S.

J Bacteriol. 2014 May;196(10):1866-76. doi: 10.1128/JB.01515-14. Epub 2014 Mar 7.

25.

Global identification of genes affecting iron-sulfur cluster biogenesis and iron homeostasis.

Hidese R, Mihara H, Kurihara T, Esaki N.

J Bacteriol. 2014 Mar;196(6):1238-49. doi: 10.1128/JB.01160-13. Epub 2014 Jan 10.

26.

An efficient method using Gluconacetobacter europaeus to reduce an unfavorable flavor compound, acetoin, in rice vinegar production.

Akasaka N, Sakoda H, Hidese R, Ishii Y, Fujiwara S.

Appl Environ Microbiol. 2013 Dec;79(23):7334-42. doi: 10.1128/AEM.02397-13. Epub 2013 Sep 20.

27.

Importance and determinants of induction of cold-induced DEAD RNA helicase in the hyperthermophilic archaeon Thermococcus kodakarensis.

Nagaoka E, Hidese R, Imanaka T, Fujiwara S.

J Bacteriol. 2013 Aug;195(15):3442-50. doi: 10.1128/JB.00332-13. Epub 2013 May 31.

28.
29.

Bacterial cysteine desulfurases: versatile key players in biosynthetic pathways of sulfur-containing biofactors.

Hidese R, Mihara H, Esaki N.

Appl Microbiol Biotechnol. 2011 Jul;91(1):47-61. doi: 10.1007/s00253-011-3336-x. Epub 2011 May 21. Review.

PMID:
21603932
30.

Escherichia coli dihydropyrimidine dehydrogenase is a novel NAD-dependent heterotetramer essential for the production of 5,6-dihydrouracil.

Hidese R, Mihara H, Kurihara T, Esaki N.

J Bacteriol. 2011 Feb;193(4):989-93. doi: 10.1128/JB.01178-10. Epub 2010 Dec 17.

31.

The iscS gene deficiency affects the expression of pyrimidine metabolism genes.

Mihara H, Hidese R, Yamane M, Kurihara T, Esaki N.

Biochem Biophys Res Commun. 2008 Aug 1;372(3):407-11. doi: 10.1016/j.bbrc.2008.05.019. Epub 2008 May 13.

PMID:
18482579

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