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Proteome-wide analysis of cysteine reactivity during effector-triggered immunity.

McConnell EW, Berg P, Westlake TJ, Wilson KM, Popescu GV, Hicks LM, Popescu SC.

Plant Physiol. 2018 Dec 3. pii: pp.01194.2018. doi: 10.1104/pp.18.01194. [Epub ahead of print]


Sex differences in the social ecology of breastfeeding: a mixed methods analysis of the breastfeeding views of expectant mothers and fathers in the US exposed to adversity.

Dayton CJ, Johnson A, Hicks LM, Goletz J, Brown S, Primuse T, Green K, Nordin MA, Welch R, Muzik M.

J Biosoc Sci. 2018 Oct 23:1-20. doi: 10.1017/S002193201800024X. [Epub ahead of print]


SVM-SulfoSite: A support vector machine based predictor for sulfenylation sites.

Al-Barakati HJ, McConnell EW, Hicks LM, Poole LB, Newman RH, Kc DB.

Sci Rep. 2018 Jul 26;8(1):11288. doi: 10.1038/s41598-018-29126-x.


Investigating the effect of target of rapamycin kinase inhibition on the Chlamydomonas reinhardtii phosphoproteome: from known homologs to new targets.

Werth EG, McConnell EW, Couso Lianez I, Perrine Z, Crespo JL, Umen JG, Hicks LM.

New Phytol. 2019 Jan;221(1):247-260. doi: 10.1111/nph.15339. Epub 2018 Jul 24.


Exploring bioactive peptides from bacterial secretomes using PepSAVI-MS: identification and characterization of Bac-21 from Enterococcus faecalis pPD1.

Kirkpatrick CL, Parsley NC, Bartges TE, Wing CE, Kommineni S, Kristich CJ, Salzman NH, Patrie SM, Hicks LM.

Microb Biotechnol. 2018 Sep;11(5):943-951. doi: 10.1111/1751-7915.13299. Epub 2018 Jul 16.


Correction to: Fungal Secretome Analysis Via PepSAVI-MS: Identification of the Bioactive Peptide KP4 from Ustilago maydis.

Kirkpatrick CL, Parsley NC, Bartges TE, Cooke ME, Evans WS, Heil LR, Smith TJ, Hicks LM.

J Am Soc Mass Spectrom. 2018 Jul 11. doi: 10.1007/s13361-018-2016-9. [Epub ahead of print]


Depressive and trauma symptoms in expectant, risk-exposed, mothers and fathers: Is mindfulness a buffer?

Hicks LM, Dayton CJ, Victor BG.

J Affect Disord. 2018 Oct 1;238:179-186. doi: 10.1016/j.jad.2018.05.044. Epub 2018 May 31.


PepSAVI-MS reveals anticancer and antifungal cycloviolacins in Viola odorata.

Parsley NC, Kirkpatrick CL, Crittenden CM, Rad JG, Hoskin DW, Brodbelt JS, Hicks LM.

Phytochemistry. 2018 Aug;152:61-70. doi: 10.1016/j.phytochem.2018.04.014. Epub 2018 May 21.


The phosphorylated redox proteome of Chlamydomonas reinhardtii: Revealing novel means for regulation of protein structure and function.

McConnell EW, Werth EG, Hicks LM.

Redox Biol. 2018 Jul;17:35-46. doi: 10.1016/j.redox.2018.04.003. Epub 2018 Apr 4.


Fungal Secretome Analysis via PepSAVI-MS: Identification of the Bioactive Peptide KP4 from Ustilago maydis.

Kirkpatrick CL, Parsley NC, Bartges TE, Cooke ME, Evans WS, Heil LR, Smith TJ, Hicks LM.

J Am Soc Mass Spectrom. 2018 May;29(5):859-865. doi: 10.1007/s13361-017-1880-z. Epub 2018 Feb 5. Erratum in: J Am Soc Mass Spectrom. 2018 Jul 11;:.


Tyrosine phosphorylation switching of a G protein.

Li B, Tunc-Ozdemir M, Urano D, Jia H, Werth EG, Mowrey DD, Hicks LM, Dokholyan NV, Torres MP, Jones AM.

J Biol Chem. 2018 Mar 30;293(13):4752-4766. doi: 10.1074/jbc.RA117.000163. Epub 2018 Jan 30.


The "PepSAVI-MS" Pipeline for Natural Product Bioactive Peptide Discovery.

Kirkpatrick CL, Broberg CA, McCool EN, Lee WJ, Chao A, McConnell EW, Pritchard DA, Hebert M, Fleeman R, Adams J, Jamil A, Madera L, Strömstedt AA, Göransson U, Liu Y, Hoskin DW, Shaw LN, Hicks LM.

Anal Chem. 2017 Jan 17;89(2):1194-1201. doi: 10.1021/acs.analchem.6b03625. Epub 2017 Jan 4.


Recovery support mediates the relationship between parental warmth and quality of life among women with substance use disorders.

Brown S, Victor B, Hicks LM, Tracy EM.

Qual Life Res. 2017 May;26(5):1327-1335. doi: 10.1007/s11136-016-1453-9. Epub 2016 Nov 10.


Parenting Efficacy and Support in Mothers With Dual Disorders in a Substance Abuse Treatment Program.

Brown S, Hicks LM, Tracy EM.

J Dual Diagn. 2016 Jul-Dec;12(3-4):227-237. Epub 2016 Oct 14.


Probing the global kinome and phosphoproteome in Chlamydomonas reinhardtii via sequential enrichment and quantitative proteomics.

Werth EG, McConnell EW, Gilbert TS, Couso Lianez I, Perez CA, Manley CK, Graves LM, Umen JG, Hicks LM.

Plant J. 2017 Jan;89(2):416-426. doi: 10.1111/tpj.13384. Epub 2017 Jan 17.


Label-free quantitative proteomic analysis of pre-flowering PMeV-infected Carica papaya L.

Soares EA, Werth EG, Madroñero LJ, Ventura JA, Rodrigues SP, Hicks LM, Fernandes PM.

J Proteomics. 2017 Jan 16;151:275-283. doi: 10.1016/j.jprot.2016.06.025. Epub 2016 Jun 23.


Identification of Evening Complex Associated Proteins in Arabidopsis by Affinity Purification and Mass Spectrometry.

Huang H, Alvarez S, Bindbeutel R, Shen Z, Naldrett MJ, Evans BS, Briggs SP, Hicks LM, Kay SA, Nusinow DA.

Mol Cell Proteomics. 2016 Jan;15(1):201-17. doi: 10.1074/mcp.M115.054064. Epub 2015 Nov 6.


Identification of regulatory network hubs that control lipid metabolism in Chlamydomonas reinhardtii.

Gargouri M, Park JJ, Holguin FO, Kim MJ, Wang H, Deshpande RR, Shachar-Hill Y, Hicks LM, Gang DR.

J Exp Bot. 2015 Aug;66(15):4551-66. doi: 10.1093/jxb/erv217. Epub 2015 May 28.


Quantitative Proteomics Analysis of Camelina sativa Seeds Overexpressing the AGG3 Gene to Identify the Proteomic Basis of Increased Yield and Stress Tolerance.

Alvarez S, Roy Choudhury S, Sivagnanam K, Hicks LM, Pandey S.

J Proteome Res. 2015 Jun 5;14(6):2606-16. doi: 10.1021/acs.jproteome.5b00150. Epub 2015 May 19.


Quantifying reversible oxidation of protein thiols in photosynthetic organisms.

Slade WO, Werth EG, McConnell EW, Alvarez S, Hicks LM.

J Am Soc Mass Spectrom. 2015 Apr;26(4):631-40. doi: 10.1007/s13361-014-1073-y. Epub 2015 Feb 20.


The response of Chlamydomonas reinhardtii to nitrogen deprivation: a systems biology analysis.

Park JJ, Wang H, Gargouri M, Deshpande RR, Skepper JN, Holguin FO, Juergens MT, Shachar-Hill Y, Hicks LM, Gang DR.

Plant J. 2015 Feb;81(4):611-24. doi: 10.1111/tpj.12747.


The regulation of photosynthetic structure and function during nitrogen deprivation in Chlamydomonas reinhardtii.

Juergens MT, Deshpande RR, Lucker BF, Park JJ, Wang H, Gargouri M, Holguin FO, Disbrow B, Schaub T, Skepper JN, Kramer DM, Gang DR, Hicks LM, Shachar-Hill Y.

Plant Physiol. 2015 Feb;167(2):558-73. doi: 10.1104/pp.114.250530. Epub 2014 Dec 8.


The global phosphoproteome of Chlamydomonas reinhardtii reveals complex organellar phosphorylation in the flagella and thylakoid membrane.

Wang H, Gau B, Slade WO, Juergens M, Li P, Hicks LM.

Mol Cell Proteomics. 2014 Sep;13(9):2337-53. doi: 10.1074/mcp.M114.038281. Epub 2014 Jun 10.


Phosphoproteomics in photosynthetic organisms.

Slade WO, Werth EG, Chao A, Hicks LM.

Electrophoresis. 2014 Dec;35(24):3441-51. doi: 10.1002/elps.201400154. Epub 2014 Jul 10. Review.


Proteome-wide quantification and characterization of oxidation-sensitive cysteines in pathogenic bacteria.

Deng X, Weerapana E, Ulanovskaya O, Sun F, Liang H, Ji Q, Ye Y, Fu Y, Zhou L, Li J, Zhang H, Wang C, Alvarez S, Hicks LM, Lan L, Wu M, Cravatt BF, He C.

Cell Host Microbe. 2013 Mar 13;13(3):358-70. doi: 10.1016/j.chom.2013.02.004.


Quantitative proteomics-based analysis supports a significant role of GTG proteins in regulation of ABA response in Arabidopsis roots.

Alvarez S, Roy Choudhury S, Hicks LM, Pandey S.

J Proteome Res. 2013 Mar 1;12(3):1487-501. doi: 10.1021/pr301159u. Epub 2013 Feb 4.


Redox switching of adenosine-5'-phosphosulfate kinase with photoactivatable atomic oxygen precursors.

Zhang M, Ravilious GE, Hicks LM, Jez JM, McCulla RD.

J Am Chem Soc. 2012 Oct 17;134(41):16979-82. doi: 10.1021/ja3078522. Epub 2012 Oct 5.


Protein cysteine phosphorylation of SarA/MgrA family transcriptional regulators mediates bacterial virulence and antibiotic resistance.

Sun F, Ding Y, Ji Q, Liang Z, Deng X, Wong CC, Yi C, Zhang L, Xie S, Alvarez S, Hicks LM, Luo C, Jiang H, Lan L, He C.

Proc Natl Acad Sci U S A. 2012 Sep 18;109(38):15461-6. Epub 2012 Aug 27.


Quorum-sensing agr mediates bacterial oxidation response via an intramolecular disulfide redox switch in the response regulator AgrA.

Sun F, Liang H, Kong X, Xie S, Cho H, Deng X, Ji Q, Zhang H, Alvarez S, Hicks LM, Bae T, Luo C, Jiang H, He C.

Proc Natl Acad Sci U S A. 2012 Jun 5;109(23):9095-100. doi: 10.1073/pnas.1200603109. Epub 2012 May 14.


From climate change to molecular response: redox proteomics of ozone-induced responses in soybean.

Galant A, Koester RP, Ainsworth EA, Hicks LM, Jez JM.

New Phytol. 2012 Apr;194(1):220-9. doi: 10.1111/j.1469-8137.2011.04037.x. Epub 2012 Jan 24.


Proteomic analysis of early-responsive redox-sensitive proteins in Arabidopsis.

Wang H, Wang S, Lu Y, Alvarez S, Hicks LM, Ge X, Xia Y.

J Proteome Res. 2012 Jan 1;11(1):412-24. doi: 10.1021/pr200918f. Epub 2011 Nov 21.


A nucleotide metabolite controls stress-responsive gene expression and plant development.

Chen H, Zhang B, Hicks LM, Xiong L.

PLoS One. 2011;6(10):e26661. doi: 10.1371/journal.pone.0026661. Epub 2011 Oct 19.


ABA-dependent and -independent G-protein signaling in Arabidopsis roots revealed through an iTRAQ proteomics approach.

Alvarez S, Hicks LM, Pandey S.

J Proteome Res. 2011 Jul 1;10(7):3107-22. doi: 10.1021/pr2001786. Epub 2011 May 23.


Two Arabidopsis cytochrome P450 monooxygenases, CYP714A1 and CYP714A2, function redundantly in plant development through gibberellin deactivation.

Zhang Y, Zhang B, Yan D, Dong W, Yang W, Li Q, Zeng L, Wang J, Wang L, Hicks LM, He Z.

Plant J. 2011 Jul;67(2):342-53. doi: 10.1111/j.1365-313X.2011.04596.x. Epub 2011 May 11.


A second target of the antimalarial and antibacterial agent fosmidomycin revealed by cellular metabolic profiling.

Zhang B, Watts KM, Hodge D, Kemp LM, Hunstad DA, Hicks LM, Odom AR.

Biochemistry. 2011 May 3;50(17):3570-7. doi: 10.1021/bi200113y. Epub 2011 Apr 11.


Redox-regulatory mechanisms induced by oxidative stress in Brassica juncea roots monitored by 2-DE proteomics.

Alvarez S, Galant A, Jez JM, Hicks LM.

Proteomics. 2011 Apr;11(7):1346-50. doi: 10.1002/pmic.201000450. Epub 2011 Feb 14.


Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine.

Song CX, Szulwach KE, Fu Y, Dai Q, Yi C, Li X, Li Y, Chen CH, Zhang W, Jian X, Wang J, Zhang L, Looney TJ, Zhang B, Godley LA, Hicks LM, Lahn BT, Jin P, He C.

Nat Biotechnol. 2011 Jan;29(1):68-72. doi: 10.1038/nbt.1732. Epub 2010 Dec 12.


Kinetic basis for the conjugation of auxin by a GH3 family indole-acetic acid-amido synthetase.

Chen Q, Westfall CS, Hicks LM, Wang S, Jez JM.

J Biol Chem. 2010 Sep 24;285(39):29780-6. doi: 10.1074/jbc.M110.146431. Epub 2010 Jul 18.


Divergent metabolome and proteome suggest functional independence of dual phloem transport systems in cucurbits.

Zhang B, Tolstikov V, Turnbull C, Hicks LM, Fiehn O.

Proc Natl Acad Sci U S A. 2010 Jul 27;107(30):13532-7. doi: 10.1073/pnas.0910558107. Epub 2010 Jun 21.


Changes in protein abundance during powdery mildew infection of leaf tissues of Cabernet Sauvignon grapevine (Vitis vinifera L.).

Marsh E, Alvarez S, Hicks LM, Barbazuk WB, Qiu W, Kovacs L, Schachtman D.

Proteomics. 2010 May;10(10):2057-64. doi: 10.1002/pmic.200900712.


A Raf-like MAPKKK gene DSM1 mediates drought resistance through reactive oxygen species scavenging in rice.

Ning J, Li X, Hicks LM, Xiong L.

Plant Physiol. 2010 Feb;152(2):876-90. doi: 10.1104/pp.109.149856. Epub 2009 Dec 9.


Alternative isoleucine synthesis pathway in cyanobacterial species.

Wu B, Zhang B, Feng X, Rubens JR, Huang R, Hicks LM, Pakrasi HB, Tang YJ.

Microbiology. 2010 Feb;156(Pt 2):596-602. doi: 10.1099/mic.0.031799-0. Epub 2009 Oct 29.


Characterization of the central metabolic pathways in Thermoanaerobacter sp. strain X514 via isotopomer-assisted metabolite analysis.

Feng X, Mouttaki H, Lin L, Huang R, Wu B, Hemme CL, He Z, Zhang B, Hicks LM, Xu J, Zhou J, Tang YJ.

Appl Environ Microbiol. 2009 Aug;75(15):5001-8. doi: 10.1128/AEM.00715-09. Epub 2009 Jun 12.


A liquid chromatography-tandem mass spectrometry-based assay for indole-3-acetic acid-amido synthetase.

Chen Q, Zhang B, Hicks LM, Wang S, Jez JM.

Anal Biochem. 2009 Jul 15;390(2):149-54. doi: 10.1016/j.ab.2009.04.027. Epub 2009 Apr 23.


Comprehensive analysis of the Brassica juncea root proteome in response to cadmium exposure by complementary proteomic approaches.

Alvarez S, Berla BM, Sheffield J, Cahoon RE, Jez JM, Hicks LM.

Proteomics. 2009 May;9(9):2419-31. doi: 10.1002/pmic.200800478. Erratum in: Proteomics. 2009 Jun;9(11):3220.


The Pseudomonas aeruginosa multidrug efflux regulator MexR uses an oxidation-sensing mechanism.

Chen H, Hu J, Chen PR, Lan L, Li Z, Hicks LM, Dinner AR, He C.

Proc Natl Acad Sci U S A. 2008 Sep 9;105(36):13586-91. doi: 10.1073/pnas.0803391105. Epub 2008 Aug 29.


Contributions of conserved serine and tyrosine residues to catalysis, ligand binding, and cofactor processing in the active site of tyrosine ammonia lyase.

Schroeder AC, Kumaran S, Hicks LM, Cahoon RE, Halls C, Yu O, Jez JM.

Phytochemistry. 2008 May;69(7):1496-506. doi: 10.1016/j.phytochem.2008.02.007. Epub 2008 Mar 17.


Abscisic acid controls calcium-dependent egress and development in Toxoplasma gondii.

Nagamune K, Hicks LM, Fux B, Brossier F, Chini EN, Sibley LD.

Nature. 2008 Jan 10;451(7175):207-10. doi: 10.1038/nature06478.


Developing a new interdisciplinary lab course for undergraduate and graduate students: Plant cells and proteins.

Jez JM, Schachtman DP, Berg RH, Taylor CG, Chen S, Hicks LM, Jaworski JG, Smith TJ, Nielsen E, Pikaard CS.

Biochem Mol Biol Educ. 2007 Nov;35(6):410-5. doi: 10.1002/bmb.99.

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