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Intraductal carcinoma of the prostate in the absence of high-grade invasive carcinoma represents a molecularly distinct type of in situ carcinoma enriched with oncogenic driver mutations.

Khani F, Wobker SE, Hicks JL, Robinson BD, Barbieri CE, De Marzo AM, Epstein JI, Pritchard CC, Lotan TL.

J Pathol. 2019 Apr 16. doi: 10.1002/path.5283. [Epub ahead of print]


Retrieval dynamics of recognition and rejection.

Papesh MH, Hicks JL, Guevara Pinto JD.

Q J Exp Psychol (Hove). 2019 Mar 28:1747021819836753. doi: 10.1177/1747021819836753. [Epub ahead of print]


Response dynamics of event-based prospective memory retrieval in mouse tracking.

Hicks JL, Spitler SN, Papesh MH.

Mem Cognit. 2019 Feb 19. doi: 10.3758/s13421-019-00909-5. [Epub ahead of print]


If this is true, what does it imply? How end-user antibody validation facilitates insights into biology and disease.

Sfanos KS, Yegnasubramanian S, Nelson WG, Lotan TL, Kulac I, Hicks JL, Zheng Q, Bieberich CJ, Haffner MC, De Marzo AM.

Asian J Urol. 2019 Jan;6(1):10-25. doi: 10.1016/j.ajur.2018.11.006. Epub 2018 Dec 12. Review.


Memory Self-Efficacy and Beliefs about Memory and Aging in Oldest-Old Adults in the Louisiana Healthy Aging Study (LHAS).

Cherry KE, Lyon BA, Boudreaux EO, Blanchard AB, Hicks JL, Elliott EM, Myers L, Kim S, Jazwinski SM.

Exp Aging Res. 2019 Jan-Feb;45(1):28-40. doi: 10.1080/0361073X.2018.1560107. Epub 2019 Feb 1.


Estimating the effect size of surgery to improve walking in children with cerebral palsy from retrospective observational clinical data.

Rajagopal A, Kidziński Ł, McGlaughlin AS, Hicks JL, Delp SL, Schwartz MH.

Sci Rep. 2018 Nov 5;8(1):16344. doi: 10.1038/s41598-018-33962-2.


Cysteine biosynthesis in Neisseria species.

Hicks JL, Mullholland CV.

Microbiology. 2018 Dec;164(12):1471-1480. doi: 10.1099/mic.0.000728. Epub 2018 Oct 11.


AXL Is a Putative Tumor Suppressor and Dormancy Regulator in Prostate Cancer.

Axelrod HD, Valkenburg KC, Amend SR, Hicks JL, Parsana P, Torga G, DeMarzo AM, Pienta KJ.

Mol Cancer Res. 2019 Feb;17(2):356-369. doi: 10.1158/1541-7786.MCR-18-0718. Epub 2018 Oct 5.


Machine learning in human movement biomechanics: Best practices, common pitfalls, and new opportunities.

Halilaj E, Rajagopal A, Fiterau M, Hicks JL, Hastie TJ, Delp SL.

J Biomech. 2018 Nov 16;81:1-11. doi: 10.1016/j.jbiomech.2018.09.009. Epub 2018 Sep 13. Review.


Hypomethylation, endogenous retrovirus expression, and interferon signaling in testicular germ cell tumors.

Haffner MC, Taheri D, Luidy-Imada E, Palsgrove DN, Eich ML, Netto GJ, Matoso A, Nirschl TR, Zheng Q, Hicks JL, Nelson WG, De Marzo AM, Marchionni L, Drake CG, Yegnasubramanian S.

Proc Natl Acad Sci U S A. 2018 Sep 11;115(37):E8580-E8582. doi: 10.1073/pnas.1803292115. Epub 2018 Sep 4. No abstract available.


VapC proteins from Mycobacterium tuberculosis share ribonuclease sequence specificity but differ in regulation and toxicity.

Sharrock A, Ruthe A, Andrews ESV, Arcus VA, Hicks JL.

PLoS One. 2018 Aug 31;13(8):e0203412. doi: 10.1371/journal.pone.0203412. eCollection 2018.


Modeling and predicting osteoarthritis progression: data from the osteoarthritis initiative.

Halilaj E, Le Y, Hicks JL, Hastie TJ, Delp SL.

Osteoarthritis Cartilage. 2018 Dec;26(12):1643-1650. doi: 10.1016/j.joca.2018.08.003. Epub 2018 Aug 18.


Molecular Pathology of High-Grade Prostatic Intraepithelial Neoplasia: Challenges and Opportunities.

Trabzonlu L, Kulac I, Zheng Q, Hicks JL, Haffner MC, Nelson WG, Sfanos KS, Ertunc O, Lotan TL, Heaphy CM, Meeker AK, Yegnasubramanian S, De Marzo AM.

Cold Spring Harb Perspect Med. 2019 Apr 1;9(4). pii: a030403. doi: 10.1101/cshperspect.a030403. Review.


OpenSim: Simulating musculoskeletal dynamics and neuromuscular control to study human and animal movement.

Seth A, Hicks JL, Uchida TK, Habib A, Dembia CL, Dunne JJ, Ong CF, DeMers MS, Rajagopal A, Millard M, Hamner SR, Arnold EM, Yong JR, Lakshmikanth SK, Sherman MA, Ku JP, Delp SL.

PLoS Comput Biol. 2018 Jul 26;14(7):e1006223. doi: 10.1371/journal.pcbi.1006223. eCollection 2018 Jul.


Prostatic Adenocarcinoma With Focal Pleomorphic Giant Cell Features: A Series of 30 Cases.

Alharbi AM, De Marzo AM, Hicks JL, Lotan TL, Epstein JI.

Am J Surg Pathol. 2018 Oct;42(10):1286-1296. doi: 10.1097/PAS.0000000000001112.


Characterization of novel cell lines derived from a MYC-driven murine model of lethal metastatic adenocarcinoma of the prostate.

Markowski MC, Hubbard GK, Hicks JL, Zheng Q, King A, Esopi D, Rege A, Yegnasubramanian S, Bieberich CJ, De Marzo AM.

Prostate. 2018 Sep;78(13):992-1000. doi: 10.1002/pros.23657. Epub 2018 May 30.


Perceptual Characterization of the Macronutrient Picture System (MaPS) for Food Image fMRI.

King JL, Fearnbach SN, Ramakrishnapillai S, Shankpal P, Geiselman PJ, Martin CK, Murray KB, Hicks JL, McClernon FJ, Apolzan JW, Carmichael OT.

Front Psychol. 2018 Jan 26;9:17. doi: 10.3389/fpsyg.2018.00017. eCollection 2018.


Mutational profiles of breast cancer metastases from a rapid autopsy series reveal multiple evolutionary trajectories.

Avigdor BE, Cimino-Mathews A, DeMarzo AM, Hicks JL, Shin J, Sukumar S, Fetting J, Argani P, Park BH, Wheelan SJ.

JCI Insight. 2017 Dec 21;2(24). pii: 96896. doi: 10.1172/jci.insight.96896.


Perspectives on Sharing Models and Related Resources in Computational Biomechanics Research.

Erdemir A, Hunter PJ, Holzapfel GA, Loew LM, Middleton J, Jacobs CR, Nithiarasu P, Löhner R, Wei G, Winkelstein BA, Barocas VH, Guilak F, Ku JP, Hicks JL, Delp SL, Sacks M, Weiss JA, Ateshian GA, Maas SA, McCulloch AD, Peng GCY.

J Biomech Eng. 2018 Feb 1;140(2). doi: 10.1115/1.4038768.


Current or recent smoking is associated with more variable telomere length in prostate stromal cells and prostate cancer cells.

Joshu CE, Peskoe SB, Heaphy CM, Kenfield SA, Mucci LA, Giovannucci EL, Stampfer MJ, Yoon G, Lee TK, Hicks JL, De Marzo AM, Meeker AK, Platz EA.

Prostate. 2018 Feb;78(3):233-238. doi: 10.1002/pros.23462. Epub 2017 Nov 22.


Rapid Loss of RNA Detection by In Situ Hybridization in Stored Tissue Blocks and Preservation by Cold Storage of Unstained Slides.

Baena-Del Valle JA, Zheng Q, Hicks JL, Fedor H, Trock BJ, Morrissey C, Corey E, Cornish TC, Sfanos KS, De Marzo AM.

Am J Clin Pathol. 2017 Nov 2;148(5):398-415. doi: 10.1093/ajcp/aqx094.


Simulating ideal assistive devices to reduce the metabolic cost of walking with heavy loads.

Dembia CL, Silder A, Uchida TK, Hicks JL, Delp SL.

PLoS One. 2017 Jul 12;12(7):e0180320. doi: 10.1371/journal.pone.0180320. eCollection 2017.


Large-scale physical activity data reveal worldwide activity inequality.

Althoff T, Sosič R, Hicks JL, King AC, Delp SL, Leskovec J.

Nature. 2017 Jul 20;547(7663):336-339. doi: 10.1038/nature23018. Epub 2017 Jul 10.


c-Myc Antagonises the Transcriptional Activity of the Androgen Receptor in Prostate Cancer Affecting Key Gene Networks.

Barfeld SJ, Urbanucci A, Itkonen HM, Fazli L, Hicks JL, Thiede B, Rennie PS, Yegnasubramanian S, DeMarzo AM, Mills IG.

EBioMedicine. 2017 Apr;18:83-93. doi: 10.1016/j.ebiom.2017.04.006. Epub 2017 Apr 5.


Preparatory co-activation of the ankle muscles may prevent ankle inversion injuries.

DeMers MS, Hicks JL, Delp SL.

J Biomech. 2017 Feb 8;52:17-23. doi: 10.1016/j.jbiomech.2016.11.002. Epub 2016 Dec 7.


Absence of Cytomegalovirus in Glioblastoma and Other High-grade Gliomas by Real-time PCR, Immunohistochemistry, and In Situ Hybridization.

Holdhoff M, Guner G, Rodriguez FJ, Hicks JL, Zheng Q, Forman MS, Ye X, Grossman SA, Meeker AK, Heaphy CM, Eberhart CG, De Marzo AM, Arav-Boger R.

Clin Cancer Res. 2017 Jun 15;23(12):3150-3157. doi: 10.1158/1078-0432.CCR-16-1490. Epub 2016 Dec 29.


Gait biomechanics in the era of data science.

Ferber R, Osis ST, Hicks JL, Delp SL.

J Biomech. 2016 Dec 8;49(16):3759-3761. doi: 10.1016/j.jbiomech.2016.10.033. Epub 2016 Oct 27.


The reliability of criterion shifting in recognition memory is task dependent.

Franks BA, Hicks JL.

Mem Cognit. 2016 Nov;44(8):1215-1227.


Simulating Ideal Assistive Devices to Reduce the Metabolic Cost of Running.

Uchida TK, Seth A, Pouya S, Dembia CL, Hicks JL, Delp SL.

PLoS One. 2016 Sep 22;11(9):e0163417. doi: 10.1371/journal.pone.0163417. eCollection 2016.


Prior task experience and comparable stimulus exposure nullify focal and nonfocal prospective memory retrieval differences.

Hicks JL, Franks BA, Spitler SN.

Q J Exp Psychol (Hove). 2017 Oct;70(10):1997-2006. doi: 10.1080/17470218.2016.1217891. Epub 2016 Aug 12.


Full-Body Musculoskeletal Model for Muscle-Driven Simulation of Human Gait.

Rajagopal A, Dembia CL, DeMers MS, Delp DD, Hicks JL, Delp SL.

IEEE Trans Biomed Eng. 2016 Oct;63(10):2068-79. doi: 10.1109/TBME.2016.2586891. Epub 2016 Jul 7.


Concurrent nuclear ERG and MYC protein overexpression defines a subset of locally advanced prostate cancer: Potential opportunities for synergistic targeted therapeutics.

Udager AM, DeMarzo AM, Shi Y, Hicks JL, Cao X, Siddiqui J, Jiang H, Chinnaiyan AM, Mehra R.

Prostate. 2016 Jun;76(9):845-53. doi: 10.1002/pros.23175. Epub 2016 Mar 8.


Stretching Your Energetic Budget: How Tendon Compliance Affects the Metabolic Cost of Running.

Uchida TK, Hicks JL, Dembia CL, Delp SL.

PLoS One. 2016 Mar 1;11(3):e0150378. doi: 10.1371/journal.pone.0150378. eCollection 2016.


In prostate cancer needle biopsies, detections of PTEN loss by fluorescence in situ hybridization (FISH) and by immunohistochemistry (IHC) are concordant and show consistent association with upgrading.

Picanço-Albuquerque CG, Morais CL, Carvalho FL, Peskoe SB, Hicks JL, Ludkovski O, Vidotto T, Fedor H, Humphreys E, Han M, Platz EA, De Marzo AM, Berman DM, Lotan TL, Squire JA.

Virchows Arch. 2016 May;468(5):607-17. doi: 10.1007/s00428-016-1904-2. Epub 2016 Feb 9.


Successful cuing of gender source memory does not improve location source memory.

Hicks JL, Starns JJ.

Mem Cognit. 2016 May;44(4):650-9. doi: 10.3758/s13421-016-0586-y.


A Prospective Investigation of PTEN Loss and ERG Expression in Lethal Prostate Cancer.

Ahearn TU, Pettersson A, Ebot EM, Gerke T, Graff RE, Morais CL, Hicks JL, Wilson KM, Rider JR, Sesso HD, Fiorentino M, Flavin R, Finn S, Giovannucci EL, Loda M, Stampfer MJ, De Marzo AM, Mucci LA, Lotan TL.

J Natl Cancer Inst. 2015 Nov 27;108(2). pii: djv346. doi: 10.1093/jnci/djv346. Print 2016 Feb.


Combined MYC Activation and Pten Loss Are Sufficient to Create Genomic Instability and Lethal Metastatic Prostate Cancer.

Hubbard GK, Mutton LN, Khalili M, McMullin RP, Hicks JL, Bianchi-Frias D, Horn LA, Kulac I, Moubarek MS, Nelson PS, Yegnasubramanian S, De Marzo AM, Bieberich CJ.

Cancer Res. 2016 Jan 15;76(2):283-92. doi: 10.1158/0008-5472.CAN-14-3280. Epub 2015 Nov 10.



Hicks JL.

Spec Care Dentist. 2015 Sep;35(5):205. doi: 10.1111/scd.12118. No abstract available.


The mobilize center: an NIH big data to knowledge center to advance human movement research and improve mobility.

Ku JP, Hicks JL, Hastie T, Leskovec J, Ré C, Delp SL.

J Am Med Inform Assoc. 2015 Nov;22(6):1120-5. doi: 10.1093/jamia/ocv071. Epub 2015 Aug 13.


Simulation-Based Design for Wearable Robotic Systems: An Optimization Framework for Enhancing a Standing Long Jump.

Ong CF, Hicks JL, Delp SL.

IEEE Trans Biomed Eng. 2016 May;63(5):894-903. doi: 10.1109/TBME.2015.2463077. Epub 2015 Jul 30.


Prediagnostic Obesity and Physical Inactivity Are Associated with Shorter Telomere Length in Prostate Stromal Cells.

Joshu CE, Peskoe SB, Heaphy CM, Kenfield SA, Van Blarigan EL, Mucci LA, Giovannucci EL, Stampfer MJ, Yoon G, Lee TK, Hicks JL, De Marzo AM, Meeker AK, Platz EA.

Cancer Prev Res (Phila). 2015 Aug;8(8):737-42. doi: 10.1158/1940-6207.CAPR-15-0097. Epub 2015 May 19.


Predictive simulation generates human adaptations during loaded and inclined walking.

Dorn TW, Wang JM, Hicks JL, Delp SL.

PLoS One. 2015 Apr 1;10(4):e0121407. doi: 10.1371/journal.pone.0121407. eCollection 2015.


Utility of PTEN and ERG immunostaining for distinguishing high-grade PIN from intraductal carcinoma of the prostate on needle biopsy.

Morais CL, Han JS, Gordetsky J, Nagar MS, Anderson AE, Lee S, Hicks JL, Zhou M, Magi-Galluzzi C, Shah RB, Epstein JI, De Marzo AM, Lotan TL.

Am J Surg Pathol. 2015 Feb;39(2):169-78. doi: 10.1097/PAS.0000000000000348.


Is my model good enough? Best practices for verification and validation of musculoskeletal models and simulations of movement.

Hicks JL, Uchida TK, Seth A, Rajagopal A, Delp SL.

J Biomech Eng. 2015 Feb 1;137(2):020905. doi: 10.1115/1.4029304. Epub 2015 Jan 26.


Musculoskeletal modelling deconstructs the paradoxical effects of elastic ankle exoskeletons on plantar-flexor mechanics and energetics during hopping.

Farris DJ, Hicks JL, Delp SL, Sawicki GS.

J Exp Biol. 2014 Nov 15;217(Pt 22):4018-28. doi: 10.1242/jeb.107656. Epub 2014 Oct 2.


Prostate adenocarcinomas aberrantly expressing p63 are molecularly distinct from usual-type prostatic adenocarcinomas.

Tan HL, Haffner MC, Esopi DM, Vaghasia AM, Giannico GA, Ross HM, Ghosh S, Hicks JL, Zheng Q, Sangoi AR, Yegnasubramanian S, Osunkoya AO, De Marzo AM, Epstein JI, Lotan TL.

Mod Pathol. 2015 Mar;28(3):446-56. doi: 10.1038/modpathol.2014.115. Epub 2014 Sep 12.


PTEN loss is associated with upgrading of prostate cancer from biopsy to radical prostatectomy.

Lotan TL, Carvalho FL, Peskoe SB, Hicks JL, Good J, Fedor H, Humphreys E, Han M, Platz EA, Squire JA, De Marzo AM, Berman DM.

Mod Pathol. 2015 Jan;28(1):128-137. doi: 10.1038/modpathol.2014.85. Epub 2014 Jul 4.


Encoding and retrieval processes involved in the access of source information in the absence of item memory.

Ball BH, DeWitt MR, Knight JB, Hicks JL.

J Exp Psychol Learn Mem Cogn. 2014 Sep;40(5):1271-86. doi: 10.1037/a0037204. Epub 2014 Jun 16.


Oral care of the patient with liver failure, pretransplant--a retrospective study.

Hicks JL.

Spec Care Dentist. 2015 Jan-Feb;35(1):8-14. doi: 10.1111/scd.12075. Epub 2014 May 19.


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