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Items: 42

1.

ABLE: blockwise site frequency spectra for inferring complex population histories and recombination.

Beeravolu CR, Hickerson MJ, Frantz LAF, Lohse K.

Genome Biol. 2018 Sep 25;19(1):145. doi: 10.1186/s13059-018-1517-y.

2.

Differential Effect of Selection against LINE Retrotransposons among Vertebrates Inferred from Whole-Genome Data and Demographic Modeling.

Xue AT, Ruggiero RP, Hickerson MJ, Boissinot S.

Genome Biol Evol. 2018 Apr 1;10(5):1265-1281. doi: 10.1093/gbe/evy083.

3.

Phenotypic and Genetic Structure Support Gene Flow Generating Gene Tree Discordances in an Amazonian Floodplain Endemic Species.

Thom G, Amaral FRD, Hickerson MJ, Aleixo A, Araujo-Silva LE, Ribas CC, Choueri E, Miyaki CY.

Syst Biol. 2018 Jul 1;67(4):700-718. doi: 10.1093/sysbio/syy004.

PMID:
29385563
4.

Strategies for improving approximate Bayesian computation tests for synchronous diversification.

Overcast I, Bagley JC, Hickerson MJ.

BMC Evol Biol. 2017 Aug 24;17(1):203. doi: 10.1186/s12862-017-1052-6.

5.

multi-dice: r package for comparative population genomic inference under hierarchical co-demographic models of independent single-population size changes.

Xue AT, Hickerson MJ.

Mol Ecol Resour. 2017 Nov;17(6):e212-e224. doi: 10.1111/1755-0998.12686. Epub 2017 May 30.

6.

Comment on Rieux and Balloux: calibration from tip-dating can compromise topological accuracy and evolutionary inference.

Emerson BC, Alvarado-Serrano DF, Hickerson MJ.

Mol Ecol. 2017 May;26(10):2623-2624. doi: 10.1111/mec.13951. Epub 2016 Dec 31.

PMID:
28039963
7.

Behavioural response to song and genetic divergence in two subspecies of white-crowned sparrows (Zonotrichia leucophrys).

Lipshutz SE, Overcast IA, Hickerson MJ, Brumfield RT, Derryberry EP.

Mol Ecol. 2017 Jun;26(11):3011-3027. doi: 10.1111/mec.14002. Epub 2017 Jan 27.

PMID:
28036146
8.

Asynchronous demographic responses to Pleistocene climate change in Eastern Nearctic vertebrates.

Burbrink FT, Chan YL, Myers EA, Ruane S, Smith BT, Hickerson MJ.

Ecol Lett. 2016 Dec;19(12):1457-1467. doi: 10.1111/ele.12695. Epub 2016 Oct 25.

PMID:
27781365
9.

Inferring responses to climate dynamics from historical demography in neotropical forest lizards.

Prates I, Xue AT, Brown JL, Alvarado-Serrano DF, Rodrigues MT, Hickerson MJ, Carnaval AC.

Proc Natl Acad Sci U S A. 2016 Jul 19;113(29):7978-85. doi: 10.1073/pnas.1601063113.

10.

Demographic inference under a spatially continuous coalescent model.

Joseph TA, Hickerson MJ, Alvarado-Serrano DF.

Heredity (Edinb). 2016 Aug;117(2):94-9. doi: 10.1038/hdy.2016.28. Epub 2016 Apr 27.

11.

Urbanization shapes the demographic history of a native rodent (the white-footed mouse, Peromyscus leucopus) in New York City.

Harris SE, Xue AT, Alvarado-Serrano D, Boehm JT, Joseph T, Hickerson MJ, Munshi-South J.

Biol Lett. 2016 Apr;12(4). pii: 20150983. doi: 10.1098/rsbl.2015.0983.

12.

The aggregate site frequency spectrum for comparative population genomic inference.

Xue AT, Hickerson MJ.

Mol Ecol. 2015 Dec;24(24):6223-40. doi: 10.1111/mec.13447. Epub 2015 Dec 12.

13.

Model misspecification confounds the estimation of rates and exaggerates their time dependency.

Emerson BC, Alvarado-Serrano DF, Hickerson MJ.

Mol Ecol. 2015 Dec;24(24):6013-20. doi: 10.1111/mec.13451.

PMID:
26769403
14.

Predicting the genetic consequences of future climate change: The power of coupling spatial demography, the coalescent, and historical landscape changes.

Brown JL, Weber JJ, Alvarado-Serrano DF, Hickerson MJ, Franks SJ, Carnaval AC.

Am J Bot. 2016 Jan;103(1):153-63. doi: 10.3732/ajb.1500117. Epub 2016 Jan 8.

15.

Comparative Population Genomics of African Montane Forest Mammals Support Population Persistence across a Climatic Gradient and Quaternary Climatic Cycles.

Demos TC, Kerbis Peterhans JC, Joseph TA, Robinson JD, Agwanda B, Hickerson MJ.

PLoS One. 2015 Sep 22;10(9):e0131800. doi: 10.1371/journal.pone.0131800. eCollection 2015.

16.

Lack of support for the time-dependent molecular evolution hypothesis.

Emerson BC, Hickerson MJ.

Mol Ecol. 2015 Feb;24(4):702-9. doi: 10.1111/mec.13070.

PMID:
25640964
17.

Population genomics reveals seahorses (Hippocampus erectus) of the western mid-Atlantic coast to be residents rather than vagrants.

Boehm JT, Waldman J, Robinson JD, Hickerson MJ.

PLoS One. 2015 Jan 28;10(1):e0116219. doi: 10.1371/journal.pone.0116219. eCollection 2015.

18.

Sampling strategies for frequency spectrum-based population genomic inference.

Robinson JD, Coffman AJ, Hickerson MJ, Gutenkunst RN.

BMC Evol Biol. 2014 Dec 4;14:254. doi: 10.1186/s12862-014-0254-4.

19.

The drivers of tropical speciation.

Smith BT, McCormack JE, Cuervo AM, Hickerson MJ, Aleixo A, Cadena CD, Pérez-Emán J, Burney CW, Xie X, Harvey MG, Faircloth BC, Glenn TC, Derryberry EP, Prejean J, Fields S, Brumfield RT.

Nature. 2014 Nov 20;515(7527):406-9. doi: 10.1038/nature13687. Epub 2014 Sep 10.

PMID:
25209666
20.

ABC inference of multi-population divergence with admixture from unphased population genomic data.

Robinson JD, Bunnefeld L, Hearn J, Stone GN, Hickerson MJ.

Mol Ecol. 2014 Sep;23(18):4458-71. doi: 10.1111/mec.12881. Epub 2014 Sep 6.

21.

All models are wrong.

Hickerson MJ.

Mol Ecol. 2014 Jun;23(12):2887-9. doi: 10.1111/mec.12794.

PMID:
24931159
22.

Detecting concerted demographic response across community assemblages using hierarchical approximate Bayesian computation.

Chan YL, Schanzenbach D, Hickerson MJ.

Mol Biol Evol. 2014 Sep;31(9):2501-15. doi: 10.1093/molbev/msu187. Epub 2014 Jun 12.

23.

Uncovering cryptic diversity and refugial persistence among small mammal lineages across the Eastern Afromontane biodiversity hotspot.

Demos TC, Kerbis Peterhans JC, Agwanda B, Hickerson MJ.

Mol Phylogenet Evol. 2014 Feb;71:41-54. doi: 10.1016/j.ympev.2013.10.014. Epub 2013 Oct 31.

PMID:
24184338
24.

Recommendations for using msBayes to incorporate uncertainty in selecting an abc model prior: a response to oaks et Al.

Hickerson MJ, Stone GN, Lohse K, Demos TC, Xie X, Landerer C, Takebayashi N.

Evolution. 2014 Jan;68(1):284-94. doi: 10.1111/evo.12241. Epub 2013 Sep 16. Erratum in: Evolution. 2014 May;68(5):1552.

PMID:
24102483
25.

Reconstructing community assembly in time and space reveals enemy escape in a Western Palearctic insect community.

Stone GN, Lohse K, Nicholls JA, Fuentes-Utrilla P, Sinclair F, Schönrogge K, Csóka G, Melika G, Nieves-Aldrey JL, Pujade-Villar J, Tavakoli M, Askew RR, Hickerson MJ.

Curr Biol. 2012 Mar 20;22(6):532-7. doi: 10.1016/j.cub.2012.01.059. Epub 2012 Mar 8.

26.

Comparative multi-locus phylogeography confirms multiple vicariance events in co-distributed rainforest frogs.

Bell RC, MacKenzie JB, Hickerson MJ, Chavarría KL, Cunningham M, Williams S, Moritz C.

Proc Biol Sci. 2012 Mar 7;279(1730):991-9. doi: 10.1098/rspb.2011.1229. Epub 2011 Sep 7.

27.

MTML-msBayes: approximate Bayesian comparative phylogeographic inference from multiple taxa and multiple loci with rate heterogeneity.

Huang W, Takebayashi N, Qi Y, Hickerson MJ.

BMC Bioinformatics. 2011 Jan 3;12:1. doi: 10.1186/1471-2105-12-1.

28.

Colonization and/or mitochondrial selective sweeps across the North Atlantic intertidal assemblage revealed by multi-taxa approximate Bayesian computation.

Ilves KL, Huang W, Wares JP, Hickerson MJ.

Mol Ecol. 2010 Oct;19(20):4505-19. doi: 10.1111/j.1365-294X.2010.04790.x. Epub 2010 Aug 23.

PMID:
20735734
29.

Phylogeography's past, present, and future: 10 years after Avise, 2000.

Hickerson MJ, Carstens BC, Cavender-Bares J, Crandall KA, Graham CH, Johnson JB, Rissler L, Victoriano PF, Yoder AD.

Mol Phylogenet Evol. 2010 Jan;54(1):291-301. doi: 10.1016/j.ympev.2009.09.016. Epub 2009 Sep 13. Review.

PMID:
19755165
30.

Stability predicts genetic diversity in the Brazilian Atlantic forest hotspot.

Carnaval AC, Hickerson MJ, Haddad CF, Rodrigues MT, Moritz C.

Science. 2009 Feb 6;323(5915):785-9. doi: 10.1126/science.1166955.

31.

Testing comparative phylogeographic models of marine vicariance and dispersal using a hierarchical Bayesian approach.

Hickerson MJ, Meyer CP.

BMC Evol Biol. 2008 Nov 27;8:322. doi: 10.1186/1471-2148-8-322.

32.

A multilocus perspective on colonization accompanied by selection and gene flow.

Rosenblum EB, Hickerson MJ, Moritz C.

Evolution. 2007 Dec;61(12):2971-85. Epub 2007 Nov 1.

PMID:
17976180
33.
34.
35.

Test for simultaneous divergence using approximate Bayesian computation.

Hickerson MJ, Stahl EA, Lessios HA.

Evolution. 2006 Dec;60(12):2435-53.

PMID:
17263107
36.

DNA barcoding will often fail to discover new animal species over broad parameter space.

Hickerson MJ, Meyer CP, Moritz C.

Syst Biol. 2006 Oct;55(5):729-39.

PMID:
17060195
37.
38.

Comparative phylogeographic summary statistics for testing simultaneous vicariance.

Hickerson MJ, Dolman G, Moritz C.

Mol Ecol. 2006 Jan;15(1):209-23.

PMID:
16367841
40.

Differential patterns of male and female mtDNA exchange across the Atlantic Ocean in the blue mussel, Mytilus edulis.

Riginos C, Hickerson MJ, Henzler CM, Cunningham CW.

Evolution. 2004 Nov;58(11):2438-51.

PMID:
15612287
41.

Calibrating a molecular clock from phylogeographic data: moments and likelihood estimators.

Hickerson MJ, Gilchrist MA, Takebayashi N.

Evolution. 2003 Oct;57(10):2216-25.

PMID:
14628910
42.

Dramatic mitochondrial gene rearrangements in the hermit crab Pagurus longicarpus (Crustacea, anomura).

Hickerson MJ, Cunningham CW.

Mol Biol Evol. 2000 Apr;17(4):639-44.

PMID:
10742054

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