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Items: 1 to 50 of 92

1.

Genome-wide transcription factor binding in leaves from C3 and C4 grasses.

Burgess SJ, Reyna-Llorens I, Stevenson SR, Singh P, Jaeger K, Hibberd JM.

Plant Cell. 2019 Aug 19. pii: tpc.00078.2019. doi: 10.1105/tpc.19.00078. [Epub ahead of print]

2.

Transgenic maize phosphoenolpyruvate carboxylase alters leaf-atmosphere CO2 and 13CO2 exchanges in Oryza sativa.

Giuliani R, Karki S, Covshoff S, Lin HC, Coe RA, Koteyeva NK, Evans MA, Quick WP, von Caemmerer S, Furbank RT, Hibberd JM, Edwards GE, Cousins AB.

Photosynth Res. 2019 Jul 19. doi: 10.1007/s11120-019-00655-4. [Epub ahead of print]

PMID:
31325077
3.

Corrigendum to: Variations in the Calvin-Benson cycle: selection pressures and optimization?

Schreier TB, Hibberd JM.

J Exp Bot. 2019 Aug 7;70(15):4063. doi: 10.1093/jxb/erz215. No abstract available.

4.

Variations in the Calvin-Benson cycle: selection pressures and optimization?

Schreier TB, Hibberd JM.

J Exp Bot. 2019 Mar 27;70(6):1697-1701. doi: 10.1093/jxb/erz078. No abstract available. Erratum in: J Exp Bot. 2019 Aug 7;70(15):4063.

5.

Knockdown of glycine decarboxylase complex alters photorespiratory carbon isotope fractionation in Oryza sativa leaves.

Giuliani R, Karki S, Covshoff S, Lin HC, Coe RA, Koteyeva NK, Quick WP, Von Caemmerer S, Furbank RT, Hibberd JM, Edwards GE, Cousins AB.

J Exp Bot. 2019 May 9;70(10):2773-2786. doi: 10.1093/jxb/erz083.

6.

Focus Issue Editorial: Synthetic Biology.

Hanson AD, Hibberd JM, Koffas MAG, Kopka J, Wurtzel ET.

Plant Physiol. 2019 Mar;179(3):772-774. doi: 10.1104/pp.19.00074. No abstract available.

PMID:
30808713
7.

Expression of SULTR2;2, encoding a low-affinity sulphur transporter, in the Arabidopsis bundle sheath and vein cells is mediated by a positive regulator.

Kirschner S, Woodfield H, Prusko K, Koczor M, Gowik U, Hibberd JM, Westhoff P.

J Exp Bot. 2018 Sep 14;69(20):4897-4906. doi: 10.1093/jxb/ery263.

8.

Light-Driven Chloride Transport Kinetics of Halorhodopsin.

Feroz H, Ferlez B, Lefoulon C, Ren T, Baker CS, Gajewski JP, Lugar DJ, Gaudana SB, Butler PJ, Hühn J, Lamping M, Parak WJ, Hibberd JM, Kerfeld CA, Smirnoff N, Blatt MR, Golbeck JH, Kumar M.

Biophys J. 2018 Jul 17;115(2):353-360. doi: 10.1016/j.bpj.2018.06.009.

9.

Droplet-based microfluidic analysis and screening of single plant cells.

Yu Z, Boehm CR, Hibberd JM, Abell C, Haseloff J, Burgess SJ, Reyna-Llorens I.

PLoS One. 2018 May 3;13(5):e0196810. doi: 10.1371/journal.pone.0196810. eCollection 2018.

10.

Natural Variation within a Species for Traits Underpinning C4 Photosynthesis.

Reeves G, Singh P, Rossberg TA, Sogbohossou EOD, Schranz ME, Hibberd JM.

Plant Physiol. 2018 Jun;177(2):504-512. doi: 10.1104/pp.18.00168. Epub 2018 Apr 20.

11.

Synergistic Binding of bHLH Transcription Factors to the Promoter of the Maize NADP-ME Gene Used in C4 Photosynthesis Is Based on an Ancient Code Found in the Ancestral C3 State.

Borba AR, Serra TS, Górska A, Gouveia P, Cordeiro AM, Reyna-Llorens I, Knerová J, Barros PM, Abreu IA, Oliveira MM, Hibberd JM, Saibo NJM.

Mol Biol Evol. 2018 Jul 1;35(7):1690-1705. doi: 10.1093/molbev/msy060.

12.

Ancient duons may underpin spatial patterning of gene expression in C4 leaves.

Reyna-Llorens I, Burgess SJ, Reeves G, Singh P, Stevenson SR, Williams BP, Stanley S, Hibberd JM.

Proc Natl Acad Sci U S A. 2018 Feb 20;115(8):1931-1936. doi: 10.1073/pnas.1720576115. Epub 2018 Feb 5.

13.

A Major Advance in Plastid Transformation.

Hibberd JM.

Plant Physiol. 2017 Sep;175(1):5. doi: 10.1104/pp.17.00992. No abstract available.

14.

Recruitment of pre-existing networks during the evolution of C4 photosynthesis.

Reyna-Llorens I, Hibberd JM.

Philos Trans R Soc Lond B Biol Sci. 2017 Sep 26;372(1730). pii: 20160386. doi: 10.1098/rstb.2016.0386. Review.

15.

Shared characteristics underpinning C4 leaf maturation derived from analysis of multiple C3 and C4 species of Flaveria.

Kümpers BM, Burgess SJ, Reyna-Llorens I, Smith-Unna R, Boursnell C, Hibberd JM.

J Exp Bot. 2017 Jan;68(2):177-189. doi: 10.1093/jxb/erw488. Epub 2017 Jan 6.

16.

Maximizing the potential of multi-parental crop populations.

Ladejobi O, Elderfield J, Gardner KA, Gaynor RC, Hickey J, Hibberd JM, Mackay IJ, Bentley AR.

Appl Transl Genom. 2016 Oct 26;11:9-17. doi: 10.1016/j.atg.2016.10.002. eCollection 2016 Dec. Review.

17.

Regulatory gateways for cell-specific gene expression in C4 leaves with Kranz anatomy.

Reeves G, Grangé-Guermente MJ, Hibberd JM.

J Exp Bot. 2017 Jan;68(2):107-116. doi: 10.1093/jxb/erw438. Epub 2016 Dec 10. Review.

PMID:
27940469
18.

Wheat genomics: Seeds of C4 photosynthesis.

Hibberd JM, Furbank RT.

Nat Plants. 2016 Nov 3;2(11):16172. doi: 10.1038/nplants.2016.172. No abstract available.

PMID:
27808227
19.

Ancestral light and chloroplast regulation form the foundations for C4 gene expression.

Burgess SJ, Granero-Moya I, Grangé-Guermente MJ, Boursnell C, Terry MJ, Hibberd JM.

Nat Plants. 2016 Oct 17;2(11):16161. doi: 10.1038/nplants.2016.161.

PMID:
27748771
20.

In retrospect: Fifty years of C4 photosynthesis.

Hibberd JM, Furbank RT.

Nature. 2016 Oct 13;538(7624):177-179. doi: 10.1038/538177b. No abstract available.

PMID:
27734875
21.

Size matters for single-cell C4 photosynthesis in Bienertia.

Jurić I, González-Pérez V, Hibberd JM, Edwards G, Burroughs NJ.

J Exp Bot. 2017 Jan;68(2):255-267. doi: 10.1093/jxb/erw374. Epub 2016 Oct 12.

22.

TransRate: reference-free quality assessment of de novo transcriptome assemblies.

Smith-Unna R, Boursnell C, Patro R, Hibberd JM, Kelly S.

Genome Res. 2016 Aug;26(8):1134-44. doi: 10.1101/gr.196469.115. Epub 2016 Jun 1.

23.

Correction: Deep Evolutionary Comparison of Gene Expression Identifies Parallel Recruitment of Trans-Factors in Two Independent Origins of C4 Photosynthesis.

Aubry S, Kelly S, Kümpers BM, Smith-Unna RD, Hibberd JM.

PLoS Genet. 2016 May 24;12(5):e1006087. doi: 10.1371/journal.pgen.1006087. eCollection 2016 May.

24.

Independent and Parallel Evolution of New Genes by Gene Duplication in Two Origins of C4 Photosynthesis Provides New Insight into the Mechanism of Phloem Loading in C4 Species.

Emms DM, Covshoff S, Hibberd JM, Kelly S.

Mol Biol Evol. 2016 Jul;33(7):1796-806. doi: 10.1093/molbev/msw057. Epub 2016 Mar 24.

25.

Targeted Knockdown of GDCH in Rice Leads to a Photorespiratory-Deficient Phenotype Useful as a Building Block for C4 Rice.

Lin H, Karki S, Coe RA, Bagha S, Khoshravesh R, Balahadia CP, Ver Sagun J, Tapia R, Israel WK, Montecillo F, de Luna A, Danila FR, Lazaro A, Realubit CM, Acoba MG, Sage TL, von Caemmerer S, Furbank RT, Cousins AB, Hibberd JM, Quick WP, Covshoff S.

Plant Cell Physiol. 2016 May;57(5):919-32. doi: 10.1093/pcp/pcw033. Epub 2016 Feb 21.

PMID:
26903527
26.

A Specific Transcriptome Signature for Guard Cells from the C4 Plant Gynandropsis gynandra.

Aubry S, Aresheva O, Reyna-Llorens I, Smith-Unna RD, Hibberd JM, Genty B.

Plant Physiol. 2016 Mar;170(3):1345-57. doi: 10.1104/pp.15.01203. Epub 2016 Jan 27.

27.

An Untranslated cis-Element Regulates the Accumulation of Multiple C4 Enzymes in Gynandropsis gynandra Mesophyll Cells.

Williams BP, Burgess SJ, Reyna-Llorens I, Knerova J, Aubry S, Stanley S, Hibberd JM.

Plant Cell. 2016 Feb;28(2):454-65. doi: 10.1105/tpc.15.00570. Epub 2016 Jan 15.

28.

Broadening the spectrum of photosynthesis in the grass, Alloteropsis semialata.

Reeves G, Hibberd JM.

Plant Cell Environ. 2016 Sep;39(9):1871-3. doi: 10.1111/pce.12685. Epub 2016 Feb 5.

PMID:
26641208
29.

C4 Photosynthesis in the Rice Paddy: Insights from the Noxious Weed Echinochloa glabrescens.

Covshoff S, Szecowka M, Hughes TE, Smith-Unna R, Kelly S, Bailey KJ, Sage TL, Pachebat JA, Leegood R, Hibberd JM.

Plant Physiol. 2016 Jan;170(1):57-73. doi: 10.1104/pp.15.00889. Epub 2015 Nov 2.

30.

Redesigning photosynthesis to sustainably meet global food and bioenergy demand.

Ort DR, Merchant SS, Alric J, Barkan A, Blankenship RE, Bock R, Croce R, Hanson MR, Hibberd JM, Long SP, Moore TA, Moroney J, Niyogi KK, Parry MA, Peralta-Yahya PP, Prince RC, Redding KE, Spalding MH, van Wijk KJ, Vermaas WF, von Caemmerer S, Weber AP, Yeates TO, Yuan JS, Zhu XG.

Proc Natl Acad Sci U S A. 2015 Jul 14;112(28):8529-36. doi: 10.1073/pnas.1424031112. Epub 2015 Jun 29.

31.

RNA-Seq based phylogeny recapitulates previous phylogeny of the genus Flaveria (Asteraceae) with some modifications.

Lyu MJ, Gowik U, Kelly S, Covshoff S, Mallmann J, Westhoff P, Hibberd JM, Stata M, Sage RF, Lu H, Wei X, Wong GK, Zhu XG.

BMC Evol Biol. 2015 Jun 18;15:116. doi: 10.1186/s12862-015-0399-9.

32.

Insights into C4 metabolism from comparative deep sequencing.

Burgess SJ, Hibberd JM.

Curr Opin Plant Biol. 2015 Jun;25:138-44. doi: 10.1016/j.pbi.2015.05.017. Epub 2015 Jun 5. Review.

PMID:
26051034
33.

Lineage-specific gene radiations underlie the evolution of novel betalain pigmentation in Caryophyllales.

Brockington SF, Yang Y, Gandia-Herrero F, Covshoff S, Hibberd JM, Sage RF, Wong GK, Moore MJ, Smith SA.

New Phytol. 2015 Sep;207(4):1170-80. doi: 10.1111/nph.13441. Epub 2015 May 13.

34.

Arabidopsis uses two gluconeogenic gateways for organic acids to fuel seedling establishment.

Eastmond PJ, Astley HM, Parsley K, Aubry S, Williams BP, Menard GN, Craddock CP, Nunes-Nesi A, Fernie AR, Hibberd JM.

Nat Commun. 2015 Apr 10;6:6659. doi: 10.1038/ncomms7659.

35.

Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing.

Yang Y, Moore MJ, Brockington SF, Soltis DE, Wong GK, Carpenter EJ, Zhang Y, Chen L, Yan Z, Xie Y, Sage RF, Covshoff S, Hibberd JM, Nelson MN, Smith SA.

Mol Biol Evol. 2015 Aug;32(8):2001-14. doi: 10.1093/molbev/msv081. Epub 2015 Apr 2.

36.

A high throughput gas exchange screen for determining rates of photorespiration or regulation of C4 activity.

Bellasio C, Burgess SJ, Griffiths H, Hibberd JM.

J Exp Bot. 2014 Jul;65(13):3769-79. doi: 10.1093/jxb/eru238. Epub 2014 Jun 13.

37.

Deep evolutionary comparison of gene expression identifies parallel recruitment of trans-factors in two independent origins of C4 photosynthesis.

Aubry S, Kelly S, Kümpers BM, Smith-Unna RD, Hibberd JM.

PLoS Genet. 2014 Jun 5;10(6):e1004365. doi: 10.1371/journal.pgen.1004365. eCollection 2014 Jun. Erratum in: PLoS Genet. 2016 May;12(5):e1006087.

38.

Evolutionary convergence of cell-specific gene expression in independent lineages of C4 grasses.

John CR, Smith-Unna RD, Woodfield H, Covshoff S, Hibberd JM.

Plant Physiol. 2014 May;165(1):62-75. doi: 10.1104/pp.114.238667. Epub 2014 Mar 27.

39.

Shared origins of a key enzyme during the evolution of C4 and CAM metabolism.

Christin PA, Arakaki M, Osborne CP, Bräutigam A, Sage RF, Hibberd JM, Kelly S, Covshoff S, Wong GK, Hancock L, Edwards EJ.

J Exp Bot. 2014 Jul;65(13):3609-21. doi: 10.1093/jxb/eru087. Epub 2014 Mar 17.

40.

Transcript residency on ribosomes reveals a key role for the Arabidopsis thaliana bundle sheath in sulfur and glucosinolate metabolism.

Aubry S, Smith-Unna RD, Boursnell CM, Kopriva S, Hibberd JM.

Plant J. 2014 May;78(4):659-73. doi: 10.1111/tpj.12502. Epub 2014 Apr 23.

41.

Endoreduplication is not involved in bundle-sheath formation in the C4 species Cleome gynandra.

Aubry S, Kneřová J, Hibberd JM.

J Exp Bot. 2014 Jul;65(13):3557-66. doi: 10.1093/jxb/ert350. Epub 2013 Nov 12.

42.

Phenotypic landscape inference reveals multiple evolutionary paths to C4 photosynthesis.

Williams BP, Johnston IG, Covshoff S, Hibberd JM.

Elife. 2013 Sep 28;2:e00961. doi: 10.7554/eLife.00961.

43.

The Tarenaya hassleriana genome provides insight into reproductive trait and genome evolution of crucifers.

Cheng S, van den Bergh E, Zeng P, Zhong X, Xu J, Liu X, Hofberger J, de Bruijn S, Bhide AS, Kuelahoglu C, Bian C, Chen J, Fan G, Kaufmann K, Hall JC, Becker A, Bräutigam A, Weber AP, Shi C, Zheng Z, Li W, Lv M, Tao Y, Wang J, Zou H, Quan Z, Hibberd JM, Zhang G, Zhu XG, Xu X, Schranz ME.

Plant Cell. 2013 Aug;25(8):2813-30. doi: 10.1105/tpc.113.113480. Epub 2013 Aug 27.

44.

Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes.

Johnson MT, Carpenter EJ, Tian Z, Bruskiewich R, Burris JN, Carrigan CT, Chase MW, Clarke ND, Covshoff S, Depamphilis CW, Edger PP, Goh F, Graham S, Greiner S, Hibberd JM, Jordon-Thaden I, Kutchan TM, Leebens-Mack J, Melkonian M, Miles N, Myburg H, Patterson J, Pires JC, Ralph P, Rolf M, Sage RF, Soltis D, Soltis P, Stevenson D, Stewart CN Jr, Surek B, Thomsen CJ, Villarreal JC, Wu X, Zhang Y, Deyholos MK, Wong GK.

PLoS One. 2012;7(11):e50226. doi: 10.1371/journal.pone.0050226. Epub 2012 Nov 21.

45.

Comparison of power output by rice (Oryza sativa) and an associated weed (Echinochloa glabrescens) in vascular plant bio-photovoltaic (VP-BPV) systems.

Bombelli P, Iyer DM, Covshoff S, McCormick AJ, Yunus K, Hibberd JM, Fisher AC, Howe CJ.

Appl Microbiol Biotechnol. 2013 Jan;97(1):429-38. doi: 10.1007/s00253-012-4473-6. Epub 2012 Oct 24.

PMID:
23093175
46.

Leaf rolling allows quantification of mRNA abundance in mesophyll cells of sorghum.

Covshoff S, Furbank RT, Leegood RC, Hibberd JM.

J Exp Bot. 2013 Jan;64(3):807-13. doi: 10.1093/jxb/ers286. Epub 2012 Oct 17.

PMID:
23077203
47.

Evolution of GOLDEN2-LIKE gene function in C(3) and C (4) plants.

Wang P, Fouracre J, Kelly S, Karki S, Gowik U, Aubry S, Shaw MK, Westhoff P, Slamet-Loedin IH, Quick WP, Hibberd JM, Langdale JA.

Planta. 2013 Feb;237(2):481-95. doi: 10.1007/s00425-012-1754-3. Epub 2012 Sep 12.

48.

Individual maize chromosomes in the C(3) plant oat can increase bundle sheath cell size and vein density.

Tolley BJ, Sage TL, Langdale JA, Hibberd JM.

Plant Physiol. 2012 Aug;159(4):1418-27. doi: 10.1104/pp.112.200584. Epub 2012 Jun 6.

49.

Plant metabolism and physiology.

Hibberd JM, Weber AP.

Curr Opin Plant Biol. 2012 Jun;15(3):225-7. doi: 10.1016/j.pbi.2012.04.001. Epub 2012 May 3. No abstract available.

PMID:
22560434
50.

Molecular evolution of genes recruited into C₄ photosynthesis.

Williams BP, Aubry S, Hibberd JM.

Trends Plant Sci. 2012 Apr;17(4):213-20. doi: 10.1016/j.tplants.2012.01.008. Epub 2012 Feb 9. Review.

PMID:
22326564

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