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Items: 1 to 50 of 307

1.

Divergent methylation of CRISPR repeats and cas genes in a subtype I-D CRISPR-Cas-system.

Scholz I, Lott SC, Behler J, Gärtner K, Hagemann M, Hess WR.

BMC Microbiol. 2019 Jul 1;19(1):147. doi: 10.1186/s12866-019-1526-3.

2.

Genetic and metabolic advances in the engineering of cyanobacteria.

Vijay D, Akhtar MK, Hess WR.

Curr Opin Biotechnol. 2019 Jun 22;59:150-156. doi: 10.1016/j.copbio.2019.05.012. [Epub ahead of print] Review.

PMID:
31238294
3.

Inactivation of the RNA helicase CrhR impacts a specific subset of the transcriptome in the cyanobacterium Synechocystis sp. PCC 6803.

Georg J, Rosana ARR, Chamot D, Migur A, Hess WR, Owttrim GW.

RNA Biol. 2019 Jun 24:1-10. doi: 10.1080/15476286.2019.1621622. [Epub ahead of print]

PMID:
31234711
4.

Cytosine N4-Methylation via M.Ssp6803II Is Involved in the Regulation of Transcription, Fine- Tuning of DNA Replication and DNA Repair in the Cyanobacterium Synechocystis sp. PCC 6803.

Gärtner K, Klähn S, Watanabe S, Mikkat S, Scholz I, Hess WR, Hagemann M.

Front Microbiol. 2019 Jun 5;10:1233. doi: 10.3389/fmicb.2019.01233. eCollection 2019.

5.

Biocomputational Analyses and Experimental Validation Identify the Regulon Controlled by the Redox-Responsive Transcription Factor RpaB.

Riediger M, Kadowaki T, Nagayama R, Georg J, Hihara Y, Hess WR.

iScience. 2019 May 31;15:316-331. doi: 10.1016/j.isci.2019.04.033. Epub 2019 Apr 28.

6.

Elements of the heterocyst-specific transcriptome unravelled by co-expression analysis in Nostoc sp. PCC 7120.

Brenes-Álvarez M, Mitschke J, Olmedo-Verd E, Georg J, Hess WR, Vioque A, Muro-Pastor AM.

Environ Microbiol. 2019 Jul;21(7):2544-2558. doi: 10.1111/1462-2920.14647. Epub 2019 May 20.

PMID:
31050860
7.

Insight into the genome and brackish water adaptation strategies of toxic and bloom-forming Baltic Sea Dolichospermum sp. UHCC 0315.

Teikari JE, Popin RV, Hou S, Wahlsten M, Hess WR, Sivonen K.

Sci Rep. 2019 Mar 20;9(1):4888. doi: 10.1038/s41598-019-40883-1.

8.

Genomic and transcriptomic insights into the survival of the subaerial cyanobacterium Nostoc flagelliforme in arid and exposed habitats.

Shang JL, Chen M, Hou S, Li T, Yang YW, Li Q, Jiang HB, Dai GZ, Zhang ZC, Hess WR, Qiu BS.

Environ Microbiol. 2019 Feb;21(2):845-863. doi: 10.1111/1462-2920.14521. Epub 2019 Jan 27.

PMID:
30623567
9.

Transcriptomic responses of the marine cyanobacterium Prochlorococcus to viral lysis products.

Fang X, Liu Y, Zhao Y, Chen Y, Liu R, Qin QL, Li G, Zhang YZ, Chan W, Hess WR, Zeng Q.

Environ Microbiol. 2019 Jun;21(6):2015-2028. doi: 10.1111/1462-2920.14513. Epub 2019 Jan 21.

PMID:
30585375
10.

FOXG1 Regulates PRKAR2B Transcriptionally and Posttranscriptionally via miR200 in the Adult Hippocampus.

Weise SC, Arumugam G, Villarreal A, Videm P, Heidrich S, Nebel N, Dumit VI, Sananbenesi F, Reimann V, Craske M, Schilling O, Hess WR, Fischer A, Backofen R, Vogel T.

Mol Neurobiol. 2018 Dec 11. doi: 10.1007/s12035-018-1444-7. [Epub ahead of print]

PMID:
30539330
11.

The primary transcriptome of the fast-growing cyanobacterium Synechococcus elongatus UTEX 2973.

Tan X, Hou S, Song K, Georg J, Klähn S, Lu X, Hess WR.

Biotechnol Biofuels. 2018 Aug 4;11:218. doi: 10.1186/s13068-018-1215-8. eCollection 2018.

12.

A glutamine riboswitch is a key element for the regulation of glutamine synthetase in cyanobacteria.

Klähn S, Bolay P, Wright PR, Atilho RM, Brewer KI, Hagemann M, Breaker RR, Hess WR.

Nucleic Acids Res. 2018 Nov 2;46(19):10082-10094. doi: 10.1093/nar/gky709.

13.

Widespread Antisense Transcription in Prokaryotes.

Georg J, Hess WR.

Microbiol Spectr. 2018 Jul;6(4). doi: 10.1128/microbiolspec.RWR-0029-2018. Review.

PMID:
30003872
14.

CRISPR-Cas systems in multicellular cyanobacteria.

Hou S, Brenes-Álvarez M, Reimann V, Alkhnbashi OS, Backofen R, Muro-Pastor AM, Hess WR.

RNA Biol. 2019 Apr;16(4):518-529. doi: 10.1080/15476286.2018.1493330. Epub 2018 Aug 15.

PMID:
29995583
15.

CRISPR-Based Technologies for Metabolic Engineering in Cyanobacteria.

Behler J, Vijay D, Hess WR, Akhtar MK.

Trends Biotechnol. 2018 Oct;36(10):996-1010. doi: 10.1016/j.tibtech.2018.05.011. Epub 2018 Jun 21. Review.

16.

Comprehensive search for accessory proteins encoded with archaeal and bacterial type III CRISPR-cas gene cassettes reveals 39 new cas gene families.

Shah SA, Alkhnbashi OS, Behler J, Han W, She Q, Hess WR, Garrett RA, Backofen R.

RNA Biol. 2019 Apr;16(4):530-542. doi: 10.1080/15476286.2018.1483685. Epub 2018 Jun 19.

17.

GLASSgo - Automated and Reliable Detection of sRNA Homologs From a Single Input Sequence.

Lott SC, Schäfer RA, Mann M, Backofen R, Hess WR, Voß B, Georg J.

Front Genet. 2018 Apr 17;9:124. doi: 10.3389/fgene.2018.00124. eCollection 2018.

18.

Cas4 Facilitates PAM-Compatible Spacer Selection during CRISPR Adaptation.

Kieper SN, Almendros C, Behler J, McKenzie RE, Nobrega FL, Haagsma AC, Vink JNA, Hess WR, Brouns SJJ.

Cell Rep. 2018 Mar 27;22(13):3377-3384. doi: 10.1016/j.celrep.2018.02.103.

19.

Comparative Genomics of the Baltic Sea Toxic Cyanobacteria Nodularia spumigena UHCC 0039 and Its Response to Varying Salinity.

Teikari JE, Hou S, Wahlsten M, Hess WR, Sivonen K.

Front Microbiol. 2018 Mar 8;9:356. doi: 10.3389/fmicb.2018.00356. eCollection 2018.

20.

Biochemical analysis of the Cas6-1 RNA endonuclease associated with the subtype I-D CRISPR-Cas system in Synechocystis sp. PCC 6803.

Jesser R, Behler J, Benda C, Reimann V, Hess WR.

RNA Biol. 2019 Apr;16(4):481-491. doi: 10.1080/15476286.2018.1447742. Epub 2018 Mar 26.

21.

The iron-stress activated RNA 1 (IsaR1) coordinates osmotic acclimation and iron starvation responses in the cyanobacterium Synechocystis sp. PCC 6803.

Rübsam H, Kirsch F, Reimann V, Erban A, Kopka J, Hagemann M, Hess WR, Klähn S.

Environ Microbiol. 2018 Aug;20(8):2757-2768. doi: 10.1111/1462-2920.14079. Epub 2018 Mar 26.

PMID:
29468839
22.

Strains of the toxic and bloom-forming Nodularia spumigena (cyanobacteria) can degrade methylphosphonate and release methane.

Teikari JE, Fewer DP, Shrestha R, Hou S, Leikoski N, Mäkelä M, Simojoki A, Hess WR, Sivonen K.

ISME J. 2018 Jun;12(6):1619-1630. doi: 10.1038/s41396-018-0056-6. Epub 2018 Feb 14.

23.

Identification of the DNA methyltransferases establishing the methylome of the cyanobacterium Synechocystis sp. PCC 6803.

Hagemann M, Gärtner K, Scharnagl M, Bolay P, Lott SC, Fuss J, Huettel B, Reinhardt R, Klähn S, Hess WR.

DNA Res. 2018 Aug 1;25(4):343-352. doi: 10.1093/dnares/dsy006.

24.

The host-encoded RNase E endonuclease as the crRNA maturation enzyme in a CRISPR-Cas subtype III-Bv system.

Behler J, Sharma K, Reimann V, Wilde A, Urlaub H, Hess WR.

Nat Microbiol. 2018 Mar;3(3):367-377. doi: 10.1038/s41564-017-0103-5. Epub 2018 Feb 5.

PMID:
29403013
25.

Benefit from decline: the primary transcriptome of Alteromonas macleodii str. Te101 during Trichodesmium demise.

Hou S, López-Pérez M, Pfreundt U, Belkin N, Stüber K, Huettel B, Reinhardt R, Berman-Frank I, Rodriguez-Valera F, Hess WR.

ISME J. 2018 Apr;12(4):981-996. doi: 10.1038/s41396-017-0034-4. Epub 2018 Jan 15.

26.

OxyS small RNA induces cell cycle arrest to allow DNA damage repair.

Barshishat S, Elgrably-Weiss M, Edelstein J, Georg J, Govindarajan S, Haviv M, Wright PR, Hess WR, Altuvia S.

EMBO J. 2018 Feb 1;37(3):413-426. doi: 10.15252/embj.201797651. Epub 2017 Dec 13.

27.

6S RNA plays a role in recovery from nitrogen depletion in Synechocystis sp. PCC 6803.

Heilmann B, Hakkila K, Georg J, Tyystjärvi T, Hess WR, Axmann IM, Dienst D.

BMC Microbiol. 2017 Dec 8;17(1):229. doi: 10.1186/s12866-017-1137-9.

28.

Resequencing of a mutant bearing an iron starvation recovery phenotype defines Slr1658 as a new player in the regulatory network of a model cyanobacterium.

Zer H, Margulis K, Georg J, Shotland Y, Kostova G, Sultan LD, Hess WR, Keren N.

Plant J. 2018 Jan;93(2):235-245. doi: 10.1111/tpj.13770. Epub 2017 Dec 20.

29.

The glucosylglycerol-degrading enzyme GghA is involved in acclimation to fluctuating salinities by the cyanobacterium Synechocystis sp. strain PCC 6803.

Kirsch F, Pade N, Klähn S, Hess WR, Hagemann M.

Microbiology. 2017 Sep;163(9):1319-1328. doi: 10.1099/mic.0.000518. Epub 2017 Aug 31.

PMID:
28857041
30.

Systems and synthetic biology for the biotechnological application of cyanobacteria.

Hagemann M, Hess WR.

Curr Opin Biotechnol. 2018 Feb;49:94-99. doi: 10.1016/j.copbio.2017.07.008. Epub 2017 Aug 29. Review.

PMID:
28843192
31.

Customized workflow development and data modularization concepts for RNA-Sequencing and metatranscriptome experiments.

Lott SC, Wolfien M, Riege K, Bagnacani A, Wolkenhauer O, Hoffmann S, Hess WR.

J Biotechnol. 2017 Nov 10;261:85-96. doi: 10.1016/j.jbiotec.2017.06.1203. Epub 2017 Jul 1. Review.

32.

The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy.

Grüning BA, Fallmann J, Yusuf D, Will S, Erxleben A, Eggenhofer F, Houwaart T, Batut B, Videm P, Bagnacani A, Wolfien M, Lott SC, Hoogstrate Y, Hess WR, Wolkenhauer O, Hoffmann S, Akalin A, Ohler U, Stadler PF, Backofen R.

Nucleic Acids Res. 2017 Jul 3;45(W1):W560-W566. doi: 10.1093/nar/gkx409.

33.

Acclimation of Oxygenic Photosynthesis to Iron Starvation Is Controlled by the sRNA IsaR1.

Georg J, Kostova G, Vuorijoki L, Schön V, Kadowaki T, Huokko T, Baumgartner D, Müller M, Klähn S, Allahverdiyeva Y, Hihara Y, Futschik ME, Aro EM, Hess WR.

Curr Biol. 2017 May 22;27(10):1425-1436.e7. doi: 10.1016/j.cub.2017.04.010. Epub 2017 May 4.

34.

Draft Genome Sequences of Nine Cyanobacterial Strains from Diverse Habitats.

Zhu T, Hou S, Lu X, Hess WR.

Genome Announc. 2017 Mar 2;5(9). pii: e01676-16. doi: 10.1128/genomeA.01676-16.

35.

Genome of a giant bacteriophage from a decaying Trichodesmium bloom.

Pfreundt U, Spungin D, Hou S, Voß B, Berman-Frank I, Hess WR.

Mar Genomics. 2017 Jun;33:21-25. doi: 10.1016/j.margen.2017.02.001. Epub 2017 Feb 22.

PMID:
28237778
36.

The Ssl2245-Sll1130 Toxin-Antitoxin System Mediates Heat-induced Programmed Cell Death in Synechocystis sp. PCC6803.

Srikumar A, Krishna PS, Sivaramakrishna D, Kopfmann S, Hess WR, Swamy MJ, Lin-Chao S, Prakash JS.

J Biol Chem. 2017 Mar 10;292(10):4222-4234. doi: 10.1074/jbc.M116.748178. Epub 2017 Jan 19.

37.

Microbial metatranscriptomes from the thermally stratified Gulf of Aqaba/Eilat during summer.

Miller DR, Pfreundt U, Elifantz H, Hess WR, Berman-Frank I.

Mar Genomics. 2017 Apr;32:23-26. doi: 10.1016/j.margen.2016.12.001. Epub 2016 Dec 20.

PMID:
28007524
38.

Small proteins in cyanobacteria provide a paradigm for the functional analysis of the bacterial micro-proteome.

Baumgartner D, Kopf M, Klähn S, Steglich C, Hess WR.

BMC Microbiol. 2016 Nov 28;16(1):285.

39.

Trimethylated homoserine functions as the major compatible solute in the globally significant oceanic cyanobacterium Trichodesmium.

Pade N, Michalik D, Ruth W, Belkin N, Hess WR, Berman-Frank I, Hagemann M.

Proc Natl Acad Sci U S A. 2016 Nov 15;113(46):13191-13196. Epub 2016 Oct 31.

40.

mdRNA-Seq analysis of marine microbial communities from the northern Red Sea.

Hou S, Pfreundt U, Miller D, Berman-Frank I, Hess WR.

Sci Rep. 2016 Oct 19;6:35470. doi: 10.1038/srep35470.

41.

Awakening of a Dormant Cyanobacterium from Nitrogen Chlorosis Reveals a Genetically Determined Program.

Klotz A, Georg J, Bučinská L, Watanabe S, Reimann V, Januszewski W, Sobotka R, Jendrossek D, Hess WR, Forchhammer K.

Curr Biol. 2016 Nov 7;26(21):2862-2872. doi: 10.1016/j.cub.2016.08.054. Epub 2016 Oct 6.

42.

CyAbrB2 Contributes to the Transcriptional Regulation of Low CO2 Acclimation in Synechocystis sp. PCC 6803.

Orf I, Schwarz D, Kaplan A, Kopka J, Hess WR, Hagemann M, Klähn S.

Plant Cell Physiol. 2016 Oct;57(10):2232-2243. Epub 2016 Sep 16.

PMID:
27638927
43.

PbS Nanocrystal Emission Is Governed by Multiple Emissive States.

Caram JR, Bertram SN, Utzat H, Hess WR, Carr JA, Bischof TS, Beyler AP, Wilson MW, Bawendi MG.

Nano Lett. 2016 Oct 12;16(10):6070-6077. Epub 2016 Sep 16.

44.

Structural constraints and enzymatic promiscuity in the Cas6-dependent generation of crRNAs.

Reimann V, Alkhnbashi OS, Saunders SJ, Scholz I, Hein S, Backofen R, Hess WR.

Nucleic Acids Res. 2017 Jan 25;45(2):915-925. doi: 10.1093/nar/gkw786. Epub 2016 Sep 5.

45.

Type II Toxin-Antitoxin Systems in the Unicellular Cyanobacterium Synechocystis sp. PCC 6803.

Kopfmann S, Roesch SK, Hess WR.

Toxins (Basel). 2016 Jul 21;8(7). pii: E228. doi: 10.3390/toxins8070228.

46.

The Non-Coding RNA Ncr0700/PmgR1 is Required for Photomixotrophic Growth and the Regulation of Glycogen Accumulation in the Cyanobacterium Synechocystis sp. PCC 6803.

de Porcellinis AJ, Klähn S, Rosgaard L, Kirsch R, Gutekunst K, Georg J, Hess WR, Sakuragi Y.

Plant Cell Physiol. 2016 Oct;57(10):2091-2103. Epub 2016 Jul 20.

PMID:
27440548
47.

A tightly inducible riboswitch system in Synechocystis sp. PCC 6803.

Ohbayashi R, Akai H, Yoshikawa H, Hess WR, Watanabe S.

J Gen Appl Microbiol. 2016 Jul 14;62(3):154-9. doi: 10.2323/jgam.2016.02.002. Epub 2016 Jun 1.

48.

Insights into isoprene production using the cyanobacterium Synechocystis sp. PCC 6803.

Pade N, Erdmann S, Enke H, Dethloff F, Dühring U, Georg J, Wambutt J, Kopka J, Hess WR, Zimmermann R, Kramer D, Hagemann M.

Biotechnol Biofuels. 2016 Apr 18;9:89. doi: 10.1186/s13068-016-0503-4. eCollection 2016.

49.

A Feed-Forward Loop Consisting of the Response Regulator RpaB and the Small RNA PsrR1 Controls Light Acclimation of Photosystem I Gene Expression in the Cyanobacterium Synechocystis sp. PCC 6803.

Kadowaki T, Nagayama R, Georg J, Nishiyama Y, Wilde A, Hess WR, Hihara Y.

Plant Cell Physiol. 2016 Apr;57(4):813-23. doi: 10.1093/pcp/pcw028. Epub 2016 Feb 12.

PMID:
26872833
50.

Sequential splicing of a group II twintron in the marine cyanobacterium Trichodesmium.

Pfreundt U, Hess WR.

Sci Rep. 2015 Nov 18;5:16829. doi: 10.1038/srep16829.

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