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Items: 1 to 50 of 158

1.

Combining diffusive gradients in thin films (DGT) and spectroscopic techniques for the determination of phosphorus species in soils.

Vogel C, Sekine R, Steckenmesser D, Lombi E, Herzel H, Zuin L, Wang D, Félix R, Adam C.

Anal Chim Acta. 2019 May 30;1057:80-87. doi: 10.1016/j.aca.2019.01.037. Epub 2019 Jan 31.

PMID:
30832921
2.

Coherency of circadian rhythms in the SCN is governed by the interplay of two coupling factors.

Tokuda IT, Ono D, Honma S, Honma KI, Herzel H.

PLoS Comput Biol. 2018 Dec 10;14(12):e1006607. doi: 10.1371/journal.pcbi.1006607. eCollection 2018 Dec.

3.

Influence of wood ash pre-treatment on leaching behaviour, liming and fertilising potential.

Maresca A, Krüger O, Herzel H, Adam C, Kalbe U, Astrup TF.

Waste Manag. 2019 Jan;83:113-122. doi: 10.1016/j.wasman.2018.11.003. Epub 2018 Nov 13.

PMID:
30514457
4.

Ultradian Rhythms in the Transcriptome of Neurospora crassa.

Ananthasubramaniam B, Diernfellner A, Brunner M, Herzel H.

iScience. 2018 Nov 30;9:475-486. doi: 10.1016/j.isci.2018.11.012. Epub 2018 Nov 10.

5.

Co-existing feedback loops generate tissue-specific circadian rhythms.

Pett JP, Kondoff M, Bordyugov G, Kramer A, Herzel H.

Life Sci Alliance. 2018 Jun 14;1(3):e201800078. doi: 10.26508/lsa.201800078. eCollection 2018 Jun.

6.

High-accuracy determination of internal circadian time from a single blood sample.

Wittenbrink N, Ananthasubramaniam B, Münch M, Koller B, Maier B, Weschke C, Bes F, de Zeeuw J, Nowozin C, Wahnschaffe A, Wisniewski S, Zaleska M, Bartok O, Ashwal-Fluss R, Lammert H, Herzel H, Hummel M, Kadener S, Kunz D, Kramer A.

J Clin Invest. 2018 Aug 31;128(9):3826-3839. doi: 10.1172/JCI120874. Epub 2018 Aug 6.

7.

The choroid plexus is an important circadian clock component.

Myung J, Schmal C, Hong S, Tsukizawa Y, Rose P, Zhang Y, Holtzman MJ, De Schutter E, Herzel H, Bordyugov G, Takumi T.

Nat Commun. 2018 Mar 14;9(1):1062. doi: 10.1038/s41467-018-03507-2.

8.

Quantitative analysis of circadian single cell oscillations in response to temperature.

Abraham U, Schlichting JK, Kramer A, Herzel H.

PLoS One. 2018 Jan 2;13(1):e0190004. doi: 10.1371/journal.pone.0190004. eCollection 2018.

9.

Combined disc pelletisation and thermal treatment of MSWI fly ash.

Huber F, Herzel H, Adam C, Mallow O, Blasenbauer D, Fellner J.

Waste Manag. 2018 Mar;73:381-391. doi: 10.1016/j.wasman.2017.12.020. Epub 2017 Dec 20.

PMID:
29273540
10.

Measuring Relative Coupling Strength in Circadian Systems.

Schmal C, Herzog ED, Herzel H.

J Biol Rhythms. 2018 Feb;33(1):84-98. doi: 10.1177/0748730417740467. Epub 2017 Dec 8.

11.

Guidelines for Genome-Scale Analysis of Biological Rhythms.

Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, Crowell AM, DeBruyne JP, Dijk DJ, DiTacchio L, Doyle FJ, Duffield GE, Dunlap JC, Eckel-Mahan K, Esser KA, FitzGerald GA, Forger DB, Francey LJ, Fu YH, Gachon F, Gatfield D, de Goede P, Golden SS, Green C, Harer J, Harmer S, Haspel J, Hastings MH, Herzel H, Herzog ED, Hoffmann C, Hong C, Hughey JJ, Hurley JM, de la Iglesia HO, Johnson C, Kay SA, Koike N, Kornacker K, Kramer A, Lamia K, Leise T, Lewis SA, Li J, Li X, Liu AC, Loros JJ, Martino TA, Menet JS, Merrow M, Millar AJ, Mockler T, Naef F, Nagoshi E, Nitabach MN, Olmedo M, Nusinow DA, Ptáček LJ, Rand D, Reddy AB, Robles MS, Roenneberg T, Rosbash M, Ruben MD, Rund SSC, Sancar A, Sassone-Corsi P, Sehgal A, Sherrill-Mix S, Skene DJ, Storch KF, Takahashi JS, Ueda HR, Wang H, Weitz C, Westermark PO, Wijnen H, Xu Y, Wu G, Yoo SH, Young M, Zhang EE, Zielinski T, Hogenesch JB.

J Biol Rhythms. 2017 Oct;32(5):380-393. doi: 10.1177/0748730417728663. Epub 2017 Nov 3.

12.

Moran's I quantifies spatio-temporal pattern formation in neural imaging data.

Schmal C, Myung J, Herzel H, Bordyugov G.

Bioinformatics. 2017 Oct 1;33(19):3072-3079. doi: 10.1093/bioinformatics/btx351.

13.

Excitability in the p53 network mediates robust signaling with tunable activation thresholds in single cells.

Mönke G, Cristiano E, Finzel A, Friedrich D, Herzel H, Falcke M, Loewer A.

Sci Rep. 2017 Apr 18;7:46571. doi: 10.1038/srep46571.

14.

Lymphocyte Circadian Clocks Control Lymph Node Trafficking and Adaptive Immune Responses.

Druzd D, Matveeva O, Ince L, Harrison U, He W, Schmal C, Herzel H, Tsang AH, Kawakami N, Leliavski A, Uhl O, Yao L, Sander LE, Chen CS, Kraus K, de Juan A, Hergenhan SM, Ehlers M, Koletzko B, Haas R, Solbach W, Oster H, Scheiermann C.

Immunity. 2017 Jan 17;46(1):120-132. doi: 10.1016/j.immuni.2016.12.011. Epub 2017 Jan 10.

15.

Adequate immune response ensured by binary IL-2 and graded CD25 expression in a murine transfer model.

Fuhrmann F, Lischke T, Gross F, Scheel T, Bauer L, Kalim KW, Radbruch A, Herzel H, Hutloff A, Baumgrass R.

Elife. 2016 Dec 30;5. pii: e20616. doi: 10.7554/eLife.20616.

16.

Feedback Loops of the Mammalian Circadian Clock Constitute Repressilator.

Pett JP, Korenčič A, Wesener F, Kramer A, Herzel H.

PLoS Comput Biol. 2016 Dec 12;12(12):e1005266. doi: 10.1371/journal.pcbi.1005266. eCollection 2016 Dec.

17.

Identification of Novel Nuclear Factor of Activated T Cell (NFAT)-associated Proteins in T Cells.

Gabriel CH, Gross F, Karl M, Stephanowitz H, Hennig AF, Weber M, Gryzik S, Bachmann I, Hecklau K, Wienands J, Schuchhardt J, Herzel H, Radbruch A, Krause E, Baumgrass R.

J Biol Chem. 2016 Nov 11;291(46):24172-24187. Epub 2016 Sep 16.

18.

Chemical state of mercury and selenium in sewage sludge ash based P-fertilizers.

Vogel C, Krüger O, Herzel H, Amidani L, Adam C.

J Hazard Mater. 2016 Aug 5;313:179-84. doi: 10.1016/j.jhazmat.2016.03.079. Epub 2016 Mar 29.

PMID:
27060867
19.

Phasegram Analysis of Vocal Fold Vibration Documented With Laryngeal High-speed Video Endoscopy.

Herbst CT, Unger J, Herzel H, Švec JG, Lohscheller J.

J Voice. 2016 Nov;30(6):771.e1-771.e15. doi: 10.1016/j.jvoice.2015.11.006. Epub 2016 Feb 12.

PMID:
26879075
20.

Antimony (Sb) and lead (Pb) in contaminated shooting range soils: Sb and Pb mobility and immobilization by iron based sorbents, a field study.

Okkenhaug G, Grasshorn Gebhardt KA, Amstaetter K, Bue HL, Herzel H, Mariussen E, Rossebø Almås Å, Cornelissen G, Breedveld GD, Rasmussen G, Mulder J.

J Hazard Mater. 2016 Apr 15;307:336-43. doi: 10.1016/j.jhazmat.2016.01.005. Epub 2016 Jan 8.

PMID:
26799225
21.

Coupling Controls the Synchrony of Clock Cells in Development and Knockouts.

Tokuda IT, Ono D, Ananthasubramaniam B, Honma S, Honma K, Herzel H.

Biophys J. 2015 Nov 17;109(10):2159-70. doi: 10.1016/j.bpj.2015.09.024.

22.

Mining for novel candidate clock genes in the circadian regulatory network.

Bhargava A, Herzel H, Ananthasubramaniam B.

BMC Syst Biol. 2015 Nov 14;9:78. doi: 10.1186/s12918-015-0227-2.

23.

Sewage sludge ash--A promising secondary phosphorus source for fertilizer production.

Herzel H, Krüger O, Hermann L, Adam C.

Sci Total Environ. 2016 Jan 15;542(Pt B):1136-43. doi: 10.1016/j.scitotenv.2015.08.059. Epub 2015 Aug 29.

PMID:
26321235
24.

Transcription factor co-occupied regions in the murine genome constitute T-helper-cell subtype-specific enhancers.

Fang Z, Hecklau K, Gross F, Bachmann I, Venzke M, Karl M, Schuchhardt J, Radbruch A, Herzel H, Baumgrass R.

Eur J Immunol. 2015 Nov;45(11):3150-7. doi: 10.1002/eji.201545713. Epub 2015 Sep 21.

25.

Corrigendum: A Theoretical Study on Seasonality.

Schmal C, Myung J, Herzel H, Bordyugov G.

Front Neurol. 2015 Jul 16;6:159. doi: 10.3389/fneur.2015.00159. eCollection 2015.

26.

Tuning the phase of circadian entrainment.

Bordyugov G, Abraham U, Granada A, Rose P, Imkeller K, Kramer A, Herzel H.

J R Soc Interface. 2015 Jul 6;12(108):20150282. doi: 10.1098/rsif.2015.0282.

27.

A theoretical study on seasonality.

Schmal C, Myung J, Herzel H, Bordyugov G.

Front Neurol. 2015 May 7;6:94. doi: 10.3389/fneur.2015.00094. eCollection 2015. Erratum in: Front Neurol. 2015;6:159.

28.

Assembly of a comprehensive regulatory network for the mammalian circadian clock: a bioinformatics approach.

Lehmann R, Childs L, Thomas P, Abreu M, Fuhr L, Herzel H, Leser U, Relógio A.

PLoS One. 2015 May 6;10(5):e0126283. doi: 10.1371/journal.pone.0126283. eCollection 2015.

29.

Gating characteristics control glutamate receptor distribution and trafficking in vivo.

Petzoldt AG, Lee YH, Khorramshahi O, Reynolds E, Plested AJ, Herzel H, Sigrist SJ.

Curr Biol. 2014 Sep 8;24(17):2059-65. doi: 10.1016/j.cub.2014.07.051. Epub 2014 Aug 14.

30.

Positive feedback promotes oscillations in negative feedback loops.

Ananthasubramaniam B, Herzel H.

PLoS One. 2014 Aug 15;9(8):e104761. doi: 10.1371/journal.pone.0104761. eCollection 2014.

31.

The structural code of cyanobacterial genomes.

Lehmann R, Machné R, Herzel H.

Nucleic Acids Res. 2014 Aug;42(14):8873-83. doi: 10.1093/nar/gku641. Epub 2014 Jul 23.

32.

Timing of circadian genes in mammalian tissues.

Korenčič A, Košir R, Bordyugov G, Lehmann R, Rozman D, Herzel H.

Sci Rep. 2014 Jul 22;4:5782. doi: 10.1038/srep05782.

33.

Ras-mediated deregulation of the circadian clock in cancer.

Relógio A, Thomas P, Medina-Pérez P, Reischl S, Bervoets S, Gloc E, Riemer P, Mang-Fatehi S, Maier B, Schäfer R, Leser U, Herzel H, Kramer A, Sers C.

PLoS Genet. 2014 May 29;10(5):e1004338. doi: 10.1371/journal.pgen.1004338. eCollection 2014.

34.

Timing of neuropeptide coupling determines synchrony and entrainment in the mammalian circadian clock.

Ananthasubramaniam B, Herzog ED, Herzel H.

PLoS Comput Biol. 2014 Apr 17;10(4):e1003565. doi: 10.1371/journal.pcbi.1003565. eCollection 2014 Apr.

35.

Elucidating the adaptation and temporal coordination of metabolic pathways using in-silico evolution.

Gottstein W, Müller S, Herzel H, Steuer R.

Biosystems. 2014 Mar;117:68-76. doi: 10.1016/j.biosystems.2013.12.006. Epub 2014 Jan 15.

PMID:
24440082
36.

Visualization of system dynamics using phasegrams.

Herbst CT, Herzel H, Svec JG, Wyman MT, Fitch WT.

J R Soc Interface. 2013 May 22;10(85):20130288. doi: 10.1098/rsif.2013.0288. Print 2013 Aug 6.

37.

Genetic redundancy strengthens the circadian clock leading to a narrow entrainment range.

Erzberger A, Hampp G, Granada AE, Albrecht U, Herzel H.

J R Soc Interface. 2013 May 15;10(84):20130221. doi: 10.1098/rsif.2013.0221. Print 2013 Jul 6.

38.

Mathematical modeling in chronobiology.

Bordyugov G, Westermark PO, Korenčič A, Bernard S, Herzel H.

Handb Exp Pharmacol. 2013;(217):335-57. doi: 10.1007/978-3-642-25950-0_14. Review.

PMID:
23604486
39.

Mechanism for 12 hr rhythm generation by the circadian clock.

Westermark PO, Herzel H.

Cell Rep. 2013 Apr 25;3(4):1228-38. doi: 10.1016/j.celrep.2013.03.013. Epub 2013 Apr 11.

40.

Human chronotypes from a theoretical perspective.

Granada AE, Bordyugov G, Kramer A, Herzel H.

PLoS One. 2013;8(3):e59464. doi: 10.1371/journal.pone.0059464. Epub 2013 Mar 27.

41.

The interplay of cis-regulatory elements rules circadian rhythms in mouse liver.

Korenčič A, Bordyugov G, Košir R, Rozman D, Goličnik M, Herzel H.

PLoS One. 2012;7(11):e46835. doi: 10.1371/journal.pone.0046835. Epub 2012 Nov 5.

42.

IL-2 Expression in Activated Human Memory FOXP3(+) Cells Critically Depends on the Cellular Levels of FOXP3 as Well as of Four Transcription Factors of  T Cell Activation.

Bendfeldt H, Benary M, Scheel T, Steinbrink K, Radbruch A, Herzel H, Baumgrass R.

Front Immunol. 2012 Aug 27;3:264. doi: 10.3389/fimmu.2012.00264. eCollection 2012.

43.

Reverse engineering a hierarchical regulatory network downstream of oncogenic KRAS.

Stelniec-Klotz I, Legewie S, Tchernitsa O, Witzel F, Klinger B, Sers C, Herzel H, Blüthgen N, Schäfer R.

Mol Syst Biol. 2012;8:601. doi: 10.1038/msb.2012.32.

44.

Stable IL-2 decision making by endogenous c-Fos amounts in peripheral memory T-helper cells.

Bendfeldt H, Benary M, Scheel T, Frischbutter S, Abajyan A, Radbruch A, Herzel H, Baumgrass R.

J Biol Chem. 2012 May 25;287(22):18386-97. doi: 10.1074/jbc.M112.358853. Epub 2012 Apr 3.

45.

Circadian desynchronization.

Granada AE, Cambras T, Díez-Noguera A, Herzel H.

Interface Focus. 2011 Feb 6;1(1):153-66. doi: 10.1098/rsfs.2010.0002. Epub 2010 Nov 17.

46.

Tuning the mammalian circadian clock: robust synergy of two loops.

Relógio A, Westermark PO, Wallach T, Schellenberg K, Kramer A, Herzel H.

PLoS Comput Biol. 2011 Dec;7(12):e1002309. doi: 10.1371/journal.pcbi.1002309. Epub 2011 Dec 15.

47.

3D-Image analysis platform monitoring relocation of pluripotency genes during reprogramming.

Jost KL, Haase S, Smeets D, Schrode N, Schmiedel JM, Bertulat B, Herzel H, Cremer M, Cardoso MC.

Nucleic Acids Res. 2011 Sep 1;39(17):e113. doi: 10.1093/nar/gkr486. Epub 2011 Jun 23.

48.

Regulation of mammalian cell cycle progression in the regenerating liver.

Chauhan A, Lorenzen S, Herzel H, Bernard S.

J Theor Biol. 2011 Aug 21;283(1):103-12. doi: 10.1016/j.jtbi.2011.05.026. Epub 2011 May 27.

PMID:
21635899
49.

Identification of Y-box binding protein 1 as a core regulator of MEK/ERK pathway-dependent gene signatures in colorectal cancer cells.

Jürchott K, Kuban RJ, Krech T, Blüthgen N, Stein U, Walther W, Friese C, Kiełbasa SM, Ungethüm U, Lund P, Knösel T, Kemmner W, Morkel M, Fritzmann J, Schlag PM, Birchmeier W, Krueger T, Sperling S, Sers C, Royer HD, Herzel H, Schäfer R.

PLoS Genet. 2010 Dec 2;6(12):e1001231. doi: 10.1371/journal.pgen.1001231.

50.

Coupling governs entrainment range of circadian clocks.

Abraham U, Granada AE, Westermark PO, Heine M, Kramer A, Herzel H.

Mol Syst Biol. 2010 Nov 30;6:438. doi: 10.1038/msb.2010.92.

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