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Items: 1 to 50 of 90

1.

Danger signals activate a putative innate immune system during regeneration in a filamentous fungus.

Medina-Castellanos E, Villalobos-Escobedo JM, Riquelme M, Read ND, Abreu-Goodger C, Herrera-Estrella A.

PLoS Genet. 2018 Nov 30;14(11):e1007390. doi: 10.1371/journal.pgen.1007390. eCollection 2018 Nov.

2.

Trichoderma species: versatile plant symbionts.

Guzmán-Guzmán P, Porras-Troncoso MD, Olmedo-Monfil V, Herrera-Estrella A.

Phytopathology. 2018 Nov 9. doi: 10.1094/PHYTO-07-18-0218-RVW. [Epub ahead of print]

PMID:
30412012
3.

Trichoderma atroviride from predator to prey: role of the MAPK Tmk3 in fungal chemical defense against fungivory by Drosophila melanogaster larvae.

Atriztán-Hernández K, Moreno-Pedraza A, Winkler R, Markow T, Herrera-Estrella A.

Appl Environ Microbiol. 2018 Nov 2. pii: AEM.01825-18. doi: 10.1128/AEM.01825-18. [Epub ahead of print]

PMID:
30389761
4.

The advantage of parallel selection of domestication genes to accelerate crop improvement.

Rendón-Anaya M, Herrera-Estrella A.

Genome Biol. 2018 Sep 28;19(1):147. doi: 10.1186/s13059-018-1537-7.

5.

An Adult Zebrafish Model Reveals that Mucormycosis Induces Apoptosis of Infected Macrophages.

López-Muñoz A, Nicolás FE, García-Moreno D, Pérez-Oliva AB, Navarro-Mendoza MI, Hernández-Oñate MA, Herrera-Estrella A, Torres-Martínez S, Ruiz-Vázquez RM, Garre V, Mulero V.

Sci Rep. 2018 Aug 24;8(1):12802. doi: 10.1038/s41598-018-30754-6.

6.

Fungal Morphogenesis, from the Polarized Growth of Hyphae to Complex Reproduction and Infection Structures.

Riquelme M, Aguirre J, Bartnicki-García S, Braus GH, Feldbrügge M, Fleig U, Hansberg W, Herrera-Estrella A, Kämper J, Kück U, Mouriño-Pérez RR, Takeshita N, Fischer R.

Microbiol Mol Biol Rev. 2018 Apr 11;82(2). pii: e00068-17. doi: 10.1128/MMBR.00068-17. Print 2018 Jun. Review.

PMID:
29643171
7.

Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation.

Pelagio-Flores R, Esparza-Reynoso S, Garnica-Vergara A, López-Bucio J, Herrera-Estrella A.

Front Plant Sci. 2017 May 17;8:822. doi: 10.3389/fpls.2017.00822. eCollection 2017.

8.

Genomic history of the origin and domestication of common bean unveils its closest sister species.

Rendón-Anaya M, Montero-Vargas JM, Saburido-Álvarez S, Vlasova A, Capella-Gutierrez S, Ordaz-Ortiz JJ, Aguilar OM, Vianello-Brondani RP, Santalla M, Delaye L, Gabaldón T, Gepts P, Winkler R, Guigó R, Delgado-Salinas A, Herrera-Estrella A.

Genome Biol. 2017 Mar 29;18(1):60. doi: 10.1186/s13059-017-1190-6.

9.

A Ras GTPase associated protein is involved in the phototropic and circadian photobiology responses in fungi.

Polaino S, Villalobos-Escobedo JM, Shakya VP, Miralles-Durán A, Chaudhary S, Sanz C, Shahriari M, Luque EM, Eslava AP, Corrochano LM, Herrera-Estrella A, Idnurm A.

Sci Rep. 2017 Mar 21;7:44790. doi: 10.1038/srep44790.

10.

Identification of effector-like proteins in Trichoderma spp. and role of a hydrophobin in the plant-fungus interaction and mycoparasitism.

Guzmán-Guzmán P, Alemán-Duarte MI, Delaye L, Herrera-Estrella A, Olmedo-Monfil V.

BMC Genet. 2017 Feb 15;18(1):16. doi: 10.1186/s12863-017-0481-y.

11.

The Complexity of Fungal Vision.

Fischer R, Aguirre J, Herrera-Estrella A, Corrochano LM.

Microbiol Spectr. 2016 Dec;4(6). doi: 10.1128/microbiolspec.FUNK-0020-2016. Review.

PMID:
28087932
12.

Effect of textile dyes on activity and differential regulation of laccase genes from Pleurotus ostreatus grown in submerged fermentation.

Garrido-Bazán V, Téllez-Téllez M, Herrera-Estrella A, Díaz-Godínez G, Nava-Galicia S, Villalobos-López MÁ, Arroyo-Becerra A, Bibbins-Martínez M.

AMB Express. 2016 Dec;6(1):93. doi: 10.1186/s13568-016-0263-3. Epub 2016 Oct 7.

13.

Global transcriptional analysis suggests Lasiodiplodia theobromae pathogenicity factors involved in modulation of grapevine defensive response.

Paolinelli-Alfonso M, Villalobos-Escobedo JM, Rolshausen P, Herrera-Estrella A, Galindo-Sánchez C, López-Hernández JF, Hernandez-Martinez R.

BMC Genomics. 2016 Aug 11;17(1):615. doi: 10.1186/s12864-016-2952-3.

14.

Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication.

Corrochano LM, Kuo A, Marcet-Houben M, Polaino S, Salamov A, Villalobos-Escobedo JM, Grimwood J, Álvarez MI, Avalos J, Bauer D, Benito EP, Benoit I, Burger G, Camino LP, Cánovas D, Cerdá-Olmedo E, Cheng JF, Domínguez A, Eliáš M, Eslava AP, Glaser F, Gutiérrez G, Heitman J, Henrissat B, Iturriaga EA, Lang BF, Lavín JL, Lee SC, Li W, Lindquist E, López-García S, Luque EM, Marcos AT, Martin J, McCluskey K, Medina HR, Miralles-Durán A, Miyazaki A, Muñoz-Torres E, Oguiza JA, Ohm RA, Olmedo M, Orejas M, Ortiz-Castellanos L, Pisabarro AG, Rodríguez-Romero J, Ruiz-Herrera J, Ruiz-Vázquez R, Sanz C, Schackwitz W, Shahriari M, Shelest E, Silva-Franco F, Soanes D, Syed K, Tagua VG, Talbot NJ, Thon MR, Tice H, de Vries RP, Wiebenga A, Yadav JS, Braun EL, Baker SE, Garre V, Schmutz J, Horwitz BA, Torres-Martínez S, Idnurm A, Herrera-Estrella A, Gabaldón T, Grigoriev IV.

Curr Biol. 2016 Jun 20;26(12):1577-1584. doi: 10.1016/j.cub.2016.04.038. Epub 2016 May 26.

15.

Dynamics of a Novel Highly Repetitive CACTA Family in Common Bean (Phaseolus vulgaris).

Gao D, Zhao D, Abernathy B, Iwata-Otsubo A, Herrera-Estrella A, Jiang N, Jackson SA.

G3 (Bethesda). 2016 Jul 7;6(7):2091-101. doi: 10.1534/g3.116.028761.

16.

The Trichoderma atroviride putative transcription factor Blu7 controls light responsiveness and tolerance.

Cetz-Chel JE, Balcázar-López E, Esquivel-Naranjo EU, Herrera-Estrella A.

BMC Genomics. 2016 May 4;17:327. doi: 10.1186/s12864-016-2639-9.

17.

The Trichoderma atroviride cryptochrome/photolyase genes regulate the expression of blr1-independent genes both in red and blue light.

García-Esquivel M, Esquivel-Naranjo EU, Hernández-Oñate MA, Ibarra-Laclette E, Herrera-Estrella A.

Fungal Biol. 2016 Apr;120(4):500-512. doi: 10.1016/j.funbio.2016.01.007. Epub 2016 Jan 18.

PMID:
27020152
18.

The interaction of fungi with the environment orchestrated by RNAi.

Villalobos-Escobedo JM, Herrera-Estrella A, Carreras-Villaseñor N.

Mycologia. 2016 May-Jun;108(3):556-71. doi: 10.3852/15-246. Epub 2016 Mar 1. Review.

PMID:
26932186
19.

Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes.

Vlasova A, Capella-Gutiérrez S, Rendón-Anaya M, Hernández-Oñate M, Minoche AE, Erb I, Câmara F, Prieto-Barja P, Corvelo A, Sanseverino W, Westergaard G, Dohm JC, Pappas GJ Jr, Saburido-Alvarez S, Kedra D, Gonzalez I, Cozzuto L, Gómez-Garrido J, Aguilar-Morón MA, Andreu N, Aguilar OM, Garcia-Mas J, Zehnsdorf M, Vázquez MP, Delgado-Salinas A, Delaye L, Lowy E, Mentaberry A, Vianello-Brondani RP, García JL, Alioto T, Sánchez F, Himmelbauer H, Santalla M, Notredame C, Gabaldón T, Herrera-Estrella A, Guigó R.

Genome Biol. 2016 Feb 25;17:32. doi: 10.1186/s13059-016-0883-6.

20.

A Trichoderma atroviride stress-activated MAPK pathway integrates stress and light signals.

Esquivel-Naranjo EU, García-Esquivel M, Medina-Castellanos E, Correa-Pérez VA, Parra-Arriaga JL, Landeros-Jaime F, Cervantes-Chávez JA, Herrera-Estrella A.

Mol Microbiol. 2016 Jun;100(5):860-76. doi: 10.1111/mmi.13355. Epub 2016 Apr 20.

21.

The Genomes of Three Uneven Siblings: Footprints of the Lifestyles of Three Trichoderma Species.

Schmoll M, Dattenböck C, Carreras-Villaseñor N, Mendoza-Mendoza A, Tisch D, Alemán MI, Baker SE, Brown C, Cervantes-Badillo MG, Cetz-Chel J, Cristobal-Mondragon GR, Delaye L, Esquivel-Naranjo EU, Frischmann A, Gallardo-Negrete Jde J, García-Esquivel M, Gomez-Rodriguez EY, Greenwood DR, Hernández-Oñate M, Kruszewska JS, Lawry R, Mora-Montes HM, Muñoz-Centeno T, Nieto-Jacobo MF, Nogueira Lopez G, Olmedo-Monfil V, Osorio-Concepcion M, Piłsyk S, Pomraning KR, Rodriguez-Iglesias A, Rosales-Saavedra MT, Sánchez-Arreguín JA, Seidl-Seiboth V, Stewart A, Uresti-Rivera EE, Wang CL, Wang TF, Zeilinger S, Casas-Flores S, Herrera-Estrella A.

Microbiol Mol Biol Rev. 2016 Feb 10;80(1):205-327. doi: 10.1128/MMBR.00040-15. Print 2016 Mar. Review.

22.

Xenobiotic Compounds Degradation by Heterologous Expression of a Trametes sanguineus Laccase in Trichoderma atroviride.

Balcázar-López E, Méndez-Lorenzo LH, Batista-García RA, Esquivel-Naranjo U, Ayala M, Kumar VV, Savary O, Cabana H, Herrera-Estrella A, Folch-Mallol JL.

PLoS One. 2016 Feb 5;11(2):e0147997. doi: 10.1371/journal.pone.0147997. eCollection 2016.

23.

De novo sequencing and analysis of Lophophora williamsii transcriptome, and searching for putative genes involved in mescaline biosynthesis.

Ibarra-Laclette E, Zamudio-Hernández F, Pérez-Torres CA, Albert VA, Ramírez-Chávez E, Molina-Torres J, Fernández-Cortes A, Calderón-Vázquez C, Olivares-Romero JL, Herrera-Estrella A, Herrera-Estrella L.

BMC Genomics. 2015 Sep 2;16:657. doi: 10.1186/s12864-015-1821-9.

24.

The Epl1 and Sm1 proteins from Trichoderma atroviride and Trichoderma virens differentially modulate systemic disease resistance against different life style pathogens in Solanum lycopersicum.

Salas-Marina MA, Isordia-Jasso MI, Islas-Osuna MA, Delgado-Sánchez P, Jiménez-Bremont JF, Rodríguez-Kessler M, Rosales-Saavedra MT, Herrera-Estrella A, Casas-Flores S.

Front Plant Sci. 2015 Feb 23;6:77. doi: 10.3389/fpls.2015.00077. eCollection 2015.

25.

Damage response involves mechanisms conserved across plants, animals and fungi.

Hernández-Oñate MA, Herrera-Estrella A.

Curr Genet. 2015 Aug;61(3):359-72. doi: 10.1007/s00294-014-0467-5. Epub 2015 Jan 9. Review.

PMID:
25572693
26.

Extracellular ATP activates MAPK and ROS signaling during injury response in the fungus Trichoderma atroviride.

Medina-Castellanos E, Esquivel-Naranjo EU, Heil M, Herrera-Estrella A.

Front Plant Sci. 2014 Nov 21;5:659. doi: 10.3389/fpls.2014.00659. eCollection 2014.

27.

Synthesis of 6-substituted 1-oxoindanoyl isoleucine conjugates and modeling studies with the COI1-JAZ co-receptor complex of lima bean.

Nakamura Y, Paetz C, Brandt W, David A, Rendón-Anaya M, Herrera-Estrella A, Mithöfer A, Boland W.

J Chem Ecol. 2014 Jul;40(7):687-99. doi: 10.1007/s10886-014-0469-2. Epub 2014 Jul 10.

PMID:
25008776
28.

The Trichoderma reesei Cry1 protein is a member of the cryptochrome/photolyase family with 6-4 photoproduct repair activity.

Guzmán-Moreno J, Flores-Martínez A, Brieba LG, Herrera-Estrella A.

PLoS One. 2014 Jun 25;9(6):e100625. doi: 10.1371/journal.pone.0100625. eCollection 2014.

29.

Trichoderma atroviride transcriptional regulator Xyr1 supports the induction of systemic resistance in plants.

Reithner B, Mach-Aigner AR, Herrera-Estrella A, Mach RL.

Appl Environ Microbiol. 2014 Sep;80(17):5274-81. doi: 10.1128/AEM.00930-14. Epub 2014 Jun 20.

30.

Trichoderma research in the genome era.

Mukherjee PK, Horwitz BA, Herrera-Estrella A, Schmoll M, Kenerley CM.

Annu Rev Phytopathol. 2013;51:105-29. doi: 10.1146/annurev-phyto-082712-102353. Review.

PMID:
23915132
31.

The RNAi machinery regulates growth and development in the filamentous fungus Trichoderma atroviride.

Carreras-Villaseñor N, Esquivel-Naranjo EU, Villalobos-Escobedo JM, Abreu-Goodger C, Herrera-Estrella A.

Mol Microbiol. 2013 Jul;89(1):96-112. doi: 10.1111/mmi.12261. Epub 2013 Jun 7.

32.

Architecture and evolution of a minute plant genome.

Ibarra-Laclette E, Lyons E, Hernández-Guzmán G, Pérez-Torres CA, Carretero-Paulet L, Chang TH, Lan T, Welch AJ, Juárez MJ, Simpson J, Fernández-Cortés A, Arteaga-Vázquez M, Góngora-Castillo E, Acevedo-Hernández G, Schuster SC, Himmelbauer H, Minoche AE, Xu S, Lynch M, Oropeza-Aburto A, Cervantes-Pérez SA, de Jesús Ortega-Estrada M, Cervantes-Luevano JI, Michael TP, Mockler T, Bryant D, Herrera-Estrella A, Albert VA, Herrera-Estrella L.

Nature. 2013 Jun 6;498(7452):94-8. doi: 10.1038/nature12132. Epub 2013 May 12.

33.

An injury-response mechanism conserved across kingdoms determines entry of the fungus Trichoderma atroviride into development.

Hernández-Oñate MA, Esquivel-Naranjo EU, Mendoza-Mendoza A, Stewart A, Herrera-Estrella AH.

Proc Natl Acad Sci U S A. 2012 Sep 11;109(37):14918-23. doi: 10.1073/pnas.1209396109. Epub 2012 Aug 27.

34.

Global transcriptome analysis of the scorpion Centruroides noxius: new toxin families and evolutionary insights from an ancestral scorpion species.

Rendón-Anaya M, Delaye L, Possani LD, Herrera-Estrella A.

PLoS One. 2012;7(8):e43331. doi: 10.1371/journal.pone.0043331. Epub 2012 Aug 17.

35.

Special issue: Trichoderma--from basic Biology to Biotechnology.

Harman GE, Herrera-Estrella AH, Horwitz BA, Lorito M.

Microbiology. 2012 Jan;158(Pt 1):1-2. doi: 10.1099/mic.0.056424-0. No abstract available.

PMID:
22210803
36.

Proteomic analysis of Trichoderma atroviride reveals independent roles for transcription factors BLR-1 and BLR-2 in light and darkness.

Sánchez-Arreguín A, Pérez-Martínez AS, Herrera-Estrella A.

Eukaryot Cell. 2012 Jan;11(1):30-41. doi: 10.1128/EC.05263-11. Epub 2011 Nov 4.

37.

Is GC bias in the nuclear genome of the carnivorous plant Utricularia driven by ROS-based mutation and biased gene conversion?

Ibarra-Laclette E, Albert VA, Herrera-Estrella A, Herrera-Estrella L.

Plant Signal Behav. 2011 Nov;6(11):1631-4. doi: 10.4161/psb.6.11.17657. Epub 2011 Nov 1.

38.

Trichoderma: sensing the environment for survival and dispersal.

Carreras-Villaseñor N, Sánchez-Arreguín JA, Herrera-Estrella AH.

Microbiology. 2012 Jan;158(Pt 1):3-16. doi: 10.1099/mic.0.052688-0. Epub 2011 Sep 29. Review.

PMID:
21964734
39.

Trichoderma-induced plant immunity likely involves both hormonal- and camalexin-dependent mechanisms in Arabidopsis thaliana and confers resistance against necrotrophic fungi Botrytis cinerea.

Contreras-Cornejo HA, Macías-Rodríguez L, Beltrán-Peña E, Herrera-Estrella A, López-Bucio J.

Plant Signal Behav. 2011 Oct;6(10):1554-63. doi: 10.4161/psb.6.10.17443. Epub 2011 Oct 1.

40.

Trichoderma: the genomics of opportunistic success.

Druzhinina IS, Seidl-Seiboth V, Herrera-Estrella A, Horwitz BA, Kenerley CM, Monte E, Mukherjee PK, Zeilinger S, Grigoriev IV, Kubicek CP.

Nat Rev Microbiol. 2011 Sep 16;9(10):749-59. doi: 10.1038/nrmicro2637. Review. Erratum in: Nat Rev Microbiol. 2011;9(12):896.

PMID:
21921934
41.

Role of the 4-phosphopantetheinyl transferase of Trichoderma virens in secondary metabolism and induction of plant defense responses.

Velazquez-Robledo R, Contreras-Cornejo HA, Macias-Rodriguez L, Hernandez-Morales A, Aguirre J, Casas-Flores S, Lopez-Bucio J, Herrera-Estrella A.

Mol Plant Microbe Interact. 2011 Dec;24(12):1459-71. doi: 10.1094/MPMI-02-11-0045.

42.

Transcriptomics and molecular evolutionary rate analysis of the bladderwort (Utricularia), a carnivorous plant with a minimal genome.

Ibarra-Laclette E, Albert VA, Pérez-Torres CA, Zamudio-Hernández F, Ortega-Estrada Mde J, Herrera-Estrella A, Herrera-Estrella L.

BMC Plant Biol. 2011 Jun 3;11:101. doi: 10.1186/1471-2229-11-101.

43.

Identification of mycoparasitism-related genes in Trichoderma atroviride.

Reithner B, Ibarra-Laclette E, Mach RL, Herrera-Estrella A.

Appl Environ Microbiol. 2011 Jul;77(13):4361-70. doi: 10.1128/AEM.00129-11. Epub 2011 Apr 29.

44.

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma.

Kubicek CP, Herrera-Estrella A, Seidl-Seiboth V, Martinez DA, Druzhinina IS, Thon M, Zeilinger S, Casas-Flores S, Horwitz BA, Mukherjee PK, Mukherjee M, Kredics L, Alcaraz LD, Aerts A, Antal Z, Atanasova L, Cervantes-Badillo MG, Challacombe J, Chertkov O, McCluskey K, Coulpier F, Deshpande N, von Döhren H, Ebbole DJ, Esquivel-Naranjo EU, Fekete E, Flipphi M, Glaser F, Gómez-Rodríguez EY, Gruber S, Han C, Henrissat B, Hermosa R, Hernández-Oñate M, Karaffa L, Kosti I, Le Crom S, Lindquist E, Lucas S, Lübeck M, Lübeck PS, Margeot A, Metz B, Misra M, Nevalainen H, Omann M, Packer N, Perrone G, Uresti-Rivera EE, Salamov A, Schmoll M, Seiboth B, Shapiro H, Sukno S, Tamayo-Ramos JA, Tisch D, Wiest A, Wilkinson HH, Zhang M, Coutinho PM, Kenerley CM, Monte E, Baker SE, Grigoriev IV.

Genome Biol. 2011;12(4):R40. doi: 10.1186/gb-2011-12-4-r40. Epub 2011 Apr 18.

45.

Trichoderma in the light of day--physiology and development.

Schmoll M, Esquivel-Naranjo EU, Herrera-Estrella A.

Fungal Genet Biol. 2010 Nov;47(11):909-16. doi: 10.1016/j.fgb.2010.04.010. Epub 2010 May 11. Review.

46.

Crucial factors of the light perception machinery and their impact on growth and cellulase gene transcription in Trichoderma reesei.

Castellanos F, Schmoll M, Martínez P, Tisch D, Kubicek CP, Herrera-Estrella A, Esquivel-Naranjo EU.

Fungal Genet Biol. 2010 May;47(5):468-76. doi: 10.1016/j.fgb.2010.02.001. Epub 2010 Feb 6.

PMID:
20144726
47.

The Palomero genome suggests metal effects on domestication.

Vielle-Calzada JP, Martínez de la Vega O, Hernández-Guzmán G, Ibarra-Laclette E, Alvarez-Mejía C, Vega-Arreguín JC, Jiménez-Moraila B, Fernández-Cortés A, Corona-Armenta G, Herrera-Estrella L, Herrera-Estrella A.

Science. 2009 Nov 20;326(5956):1078. doi: 10.1126/science.1178437.

48.

Transcriptomic response of the mycoparasitic fungus Trichoderma atroviride to the presence of a fungal prey.

Seidl V, Song L, Lindquist E, Gruber S, Koptchinskiy A, Zeilinger S, Schmoll M, Martínez P, Sun J, Grigoriev I, Herrera-Estrella A, Baker SE, Kubicek CP.

BMC Genomics. 2009 Nov 30;10:567. doi: 10.1186/1471-2164-10-567.

49.

Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing.

Vega-Arreguín JC, Ibarra-Laclette E, Jiménez-Moraila B, Martínez O, Vielle-Calzada JP, Herrera-Estrella L, Herrera-Estrella A.

BMC Genomics. 2009 Jul 6;10:299. doi: 10.1186/1471-2164-10-299.

50.

Biological Control of the Root-Knot Nematode Meloidogyne javanica by Trichoderma harzianum.

Sharon E, Bar-Eyal M, Chet I, Herrera-Estrella A, Kleifeld O, Spiegel Y.

Phytopathology. 2001 Jul;91(7):687-93. doi: 10.1094/PHYTO.2001.91.7.687.

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