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Items: 27

1.

Defining the impact of mutation accumulation on replicative lifespan in yeast using cancer-associated mutator phenotypes.

Lee MB, Dowsett IT, Carr DT, Wasko BM, Stanton SG, Chung MS, Ghodsian N, Bode A, Kiflezghi MG, Uppal PA, Grayden KA, Elala YC, Tang TT, Tran NHB, Tran THB, Diep AB, Hope M, Promislow DEL, Kennedy SR, Kaeberlein M, Herr AJ.

Proc Natl Acad Sci U S A. 2019 Feb 19;116(8):3062-3071. doi: 10.1073/pnas.1815966116. Epub 2019 Feb 4.

PMID:
30718408
2.

Normally lethal amino acid substitutions suppress an ultramutator DNA Polymerase δ variant.

Dennis DG, McKay-Fleisch J, Eitzen K, Dowsett I, Kennedy SR, Herr AJ.

Sci Rep. 2017 Apr 18;7:46535. doi: 10.1038/srep46535.

3.

POLD1 Germline Mutations in Patients Initially Diagnosed with Werner Syndrome.

Lessel D, Hisama FM, Szakszon K, Saha B, Sanjuanelo AB, Salbert BA, Steele PD, Baldwin J, Brown WT, Piussan C, Plauchu H, Szilvássy J, Horkay E, Högel J, Martin GM, Herr AJ, Oshima J, Kubisch C.

Hum Mutat. 2015 Nov;36(11):1070-9. doi: 10.1002/humu.22833. Epub 2015 Aug 6.

4.

Volatility of Mutator Phenotypes at Single Cell Resolution.

Kennedy SR, Schultz EM, Chappell TM, Kohrn B, Knowels GM, Herr AJ.

PLoS Genet. 2015 Apr 13;11(4):e1005151. doi: 10.1371/journal.pgen.1005151. eCollection 2015 Apr.

5.

dNTP pool levels modulate mutator phenotypes of error-prone DNA polymerase ε variants.

Williams LN, Marjavaara L, Knowels GM, Schultz EM, Fox EJ, Chabes A, Herr AJ.

Proc Natl Acad Sci U S A. 2015 May 12;112(19):E2457-66. doi: 10.1073/pnas.1422948112. Epub 2015 Mar 31.

6.

DNA replication error-induced extinction of diploid yeast.

Herr AJ, Kennedy SR, Knowels GM, Schultz EM, Preston BD.

Genetics. 2014 Mar;196(3):677-91. doi: 10.1534/genetics.113.160960. Epub 2014 Jan 3.

7.

Emergence of DNA polymerase ε antimutators that escape error-induced extinction in yeast.

Williams LN, Herr AJ, Preston BD.

Genetics. 2013 Mar;193(3):751-70. doi: 10.1534/genetics.112.146910. Epub 2013 Jan 10.

8.

Somatic mutations in aging, cancer and neurodegeneration.

Kennedy SR, Loeb LA, Herr AJ.

Mech Ageing Dev. 2012 Apr;133(4):118-26. doi: 10.1016/j.mad.2011.10.009. Epub 2011 Nov 3. Review.

9.

Mutator suppression and escape from replication error-induced extinction in yeast.

Herr AJ, Ogawa M, Lawrence NA, Williams LN, Eggington JM, Singh M, Smith RA, Preston BD.

PLoS Genet. 2011 Oct;7(10):e1002282. doi: 10.1371/journal.pgen.1002282. Epub 2011 Oct 6. Erratum in: PLoS Genet. 2011 Nov;7(11). doi:10.1371/annotation/db1d9553-4ebd-4015-a1cd-c483dbc0d7e5.

10.

Antimutator variants of DNA polymerases.

Herr AJ, Williams LN, Preston BD.

Crit Rev Biochem Mol Biol. 2011 Dec;46(6):548-70. doi: 10.3109/10409238.2011.620941. Epub 2011 Oct 6. Review.

11.

DNA replication fidelity and cancer.

Preston BD, Albertson TM, Herr AJ.

Semin Cancer Biol. 2010 Oct;20(5):281-93. doi: 10.1016/j.semcancer.2010.10.009. Epub 2010 Oct 15. Review.

12.

An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis.

Smith LM, Pontes O, Searle I, Yelina N, Yousafzai FK, Herr AJ, Pikaard CS, Baulcombe DC.

Plant Cell. 2007 May;19(5):1507-21. Epub 2007 May 25.

13.

Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis.

Herr AJ, Molnàr A, Jones A, Baulcombe DC.

Proc Natl Acad Sci U S A. 2006 Oct 10;103(41):14994-5001. Epub 2006 Sep 28.

14.

Pathways through the small RNA world of plants.

Herr AJ.

FEBS Lett. 2005 Oct 31;579(26):5879-88. Epub 2005 Sep 2. Review.

15.

RNA silencing pathways in plants.

Herr AJ, Baulcombe DC.

Cold Spring Harb Symp Quant Biol. 2004;69:363-70. Review. No abstract available.

PMID:
16117669
16.

RNA polymerase IV directs silencing of endogenous DNA.

Herr AJ, Jensen MB, Dalmay T, Baulcombe DC.

Science. 2005 Apr 1;308(5718):118-20. Epub 2005 Feb 3.

17.

Silence is green.

Herr AJ.

Biochem Soc Trans. 2004 Dec;32(Pt 6):946-51. Review.

PMID:
15506932
18.

Factors that influence selection of coding resumption sites in translational bypassing: minimal conventional peptidyl-tRNA:mRNA pairing can suffice.

Herr AJ, Wills NM, Nelson CC, Gesteland RF, Atkins JF.

J Biol Chem. 2004 Mar 19;279(12):11081-7. Epub 2004 Jan 5.

19.

Overriding standard decoding: implications of recoding for ribosome function and enrichment of gene expression.

Atkins JF, Baranov PV, Fayet O, Herr AJ, Howard MT, Ivanov IP, Matsufuji S, Miller WA, Moore B, Prère MF, Wills NM, Zhou J, Gesteland RF.

Cold Spring Harb Symp Quant Biol. 2001;66:217-32. Review. No abstract available.

PMID:
12762024
20.

Drop-off during ribosome hopping.

Herr AJ, Wills NM, Nelson CC, Gesteland RF, Atkins JF.

J Mol Biol. 2001 Aug 17;311(3):445-52.

PMID:
11492998
21.

Analysis of the roles of tRNA structure, ribosomal protein L9, and the bacteriophage T4 gene 60 bypassing signals during ribosome slippage on mRNA.

Herr AJ, Nelson CC, Wills NM, Gesteland RF, Atkins JF.

J Mol Biol. 2001 Jun 22;309(5):1029-48.

PMID:
11399077
22.

Coupling of open reading frames by translational bypassing.

Herr AJ, Atkins JF, Gesteland RF.

Annu Rev Biochem. 2000;69:343-72. Review.

PMID:
10966462
23.

One protein from two open reading frames: mechanism of a 50 nt translational bypass.

Herr AJ, Gesteland RF, Atkins JF.

EMBO J. 2000 Jun 1;19(11):2671-80.

24.

The 23 S rRNA environment of ribosomal protein L9 in the 50 S ribosomal subunit.

Lieberman KR, Firpo MA, Herr AJ, Nguyenle T, Atkins JF, Gesteland RF, Noller HF.

J Mol Biol. 2000 Apr 14;297(5):1129-43.

PMID:
10764578
25.
26.

Efficiency of T4 gene 60 translational bypassing.

Maldonado R, Herr AJ.

J Bacteriol. 1998 Apr;180(7):1822-30.

27.

Mathematics courses for physicians and other life scientists.

Tallarida RJ, Herr AJ Jr, Sun HH, Hahn AW.

J Med Educ. 1969 Dec;44(12):1170-3. No abstract available.

PMID:
5362375

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