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Items: 1 to 50 of 107

1.

Niche Differentiation of Aerobic and Anaerobic Ammonia Oxidizers in a High Latitude Deep Oxygen Minimum Zone.

Muck S, De Corte D, Clifford EL, Bayer B, Herndl GJ, Sintes E.

Front Microbiol. 2019 Sep 13;10:2141. doi: 10.3389/fmicb.2019.02141. eCollection 2019.

2.

Viral Communities in the Global Deep Ocean Conveyor Belt Assessed by Targeted Viromics.

De Corte D, Martínez JM, Cretoiu MS, Takaki Y, Nunoura T, Sintes E, Herndl GJ, Yokokawa T.

Front Microbiol. 2019 Aug 21;10:1801. doi: 10.3389/fmicb.2019.01801. eCollection 2019.

3.

Uneven host cell growth causes lysogenic virus induction in the Baltic Sea.

Köstner N, Jürgens K, Labrenz M, Herndl GJ, Winter C.

PLoS One. 2019 Aug 6;14(8):e0220716. doi: 10.1371/journal.pone.0220716. eCollection 2019.

4.

Towards Integrating Evolution, Metabolism, and Climate Change Studies of Marine Ecosystems.

Baltar F, Bayer B, Bednarsek N, Deppeler S, Escribano R, Gonzalez CE, Hansman RL, Mishra RK, Moran MA, Repeta DJ, Robinson C, Sintes E, Tamburini C, Valentin LE, Herndl GJ.

Trends Ecol Evol. 2019 Jul 24. pii: S0169-5347(19)30193-4. doi: 10.1016/j.tree.2019.07.003. [Epub ahead of print] Review.

5.

Ammonia-oxidizing archaea release a suite of organic compounds potentially fueling prokaryotic heterotrophy in the ocean.

Bayer B, Hansman RL, Bittner MJ, Noriega-Ortega BE, Niggemann J, Dittmar T, Herndl GJ.

Environ Microbiol. 2019 Jul 23. doi: 10.1111/1462-2920.14755. [Epub ahead of print]

PMID:
31336026
6.

Highly variable mRNA half-life time within marine bacterial taxa and functional genes.

Steiner PA, De Corte D, Geijo J, Mena C, Yokokawa T, Rattei T, Herndl GJ, Sintes E.

Environ Microbiol. 2019 Oct;21(10):3873-3884. doi: 10.1111/1462-2920.14737. Epub 2019 Jul 25.

PMID:
31298776
7.

Seasonal dynamics of marine snow-associated and free-living demethylating bacterial communities in the coastal northern Adriatic Sea.

Steiner PA, Sintes E, Simó R, De Corte D, Pfannkuchen DM, Ivančić I, Najdek M, Herndl GJ.

Environ Microbiol Rep. 2019 Oct;11(5):699-707. doi: 10.1111/1758-2229.12783. Epub 2019 Jul 25.

8.

Proteomic Response of Three Marine Ammonia-Oxidizing Archaea to Hydrogen Peroxide and Their Metabolic Interactions with a Heterotrophic Alphaproteobacterium.

Bayer B, Pelikan C, Bittner MJ, Reinthaler T, Könneke M, Herndl GJ, Offre P.

mSystems. 2019 Jun 25;4(4). pii: e00181-19. doi: 10.1128/mSystems.00181-19.

9.

The composition of bacterial communities associated with plastic biofilms differs between different polymers and stages of biofilm succession.

Pinto M, Langer TM, Hüffer T, Hofmann T, Herndl GJ.

PLoS One. 2019 Jun 5;14(6):e0217165. doi: 10.1371/journal.pone.0217165. eCollection 2019.

10.

Nitrosopumilus adriaticus sp. nov. and Nitrosopumilus piranensis sp. nov., two ammonia-oxidizing archaea from the Adriatic Sea and members of the class Nitrososphaeria.

Bayer B, Vojvoda J, Reinthaler T, Reyes C, Pinto M, Herndl GJ.

Int J Syst Evol Microbiol. 2019 Jul;69(7):1892-1902. doi: 10.1099/ijsem.0.003360. Epub 2019 Apr 2.

PMID:
30938665
11.

Jellyfish-Associated Microbiome in the Marine Environment: Exploring Its Biotechnological Potential.

Tinta T, Kogovšek T, Klun K, Malej A, Herndl GJ, Turk V.

Mar Drugs. 2019 Feb 1;17(2). pii: E94. doi: 10.3390/md17020094. Review.

12.

Taurine Is a Major Carbon and Energy Source for Marine Prokaryotes in the North Atlantic Ocean off the Iberian Peninsula.

Clifford EL, Varela MM, De Corte D, Bode A, Ortiz V, Herndl GJ, Sintes E.

Microb Ecol. 2019 Aug;78(2):299-312. doi: 10.1007/s00248-019-01320-y. Epub 2019 Jan 21.

13.

Differential Response of Cafeteria roenbergensis to Different Bacterial and Archaeal Prey Characteristics.

De Corte D, Paredes G, Yokokawa T, Sintes E, Herndl GJ.

Microb Ecol. 2019 Jul;78(1):1-5. doi: 10.1007/s00248-018-1293-y. Epub 2018 Nov 17.

PMID:
30448922
14.

Seasonal variations in extracellular enzymatic activity in marine snow-associated microbial communities and their impact on the surrounding water.

Ivancic I, Paliaga P, Pfannkuchen M, Djakovac T, Najdek M, Steiner P, Korlevic M, Markovski M, Baricevic A, Tankovic MS, Herndl GJ.

FEMS Microbiol Ecol. 2018 Dec 1;94(12). doi: 10.1093/femsec/fiy198.

PMID:
30299466
15.

Dissolved organic carbon leaching from plastics stimulates microbial activity in the ocean.

Romera-Castillo C, Pinto M, Langer TM, Álvarez-Salgado XA, Herndl GJ.

Nat Commun. 2018 Apr 12;9(1):1430. doi: 10.1038/s41467-018-03798-5.

16.

Mixing alters the lytic activity of viruses in the dark ocean.

Winter C, Köstner N, Kruspe CP, Urban D, Muck S, Reinthaler T, Herndl GJ.

Ecology. 2018 Mar;99(3):700-713. doi: 10.1002/ecy.2135. Epub 2018 Feb 6.

17.

Organic matter processing by microbial communities throughout the Atlantic water column as revealed by metaproteomics.

Bergauer K, Fernandez-Guerra A, Garcia JAL, Sprenger RR, Stepanauskas R, Pachiadaki MG, Jensen ON, Herndl GJ.

Proc Natl Acad Sci U S A. 2018 Jan 16;115(3):E400-E408. doi: 10.1073/pnas.1708779115. Epub 2017 Dec 18.

18.

Crustacean zooplankton release copious amounts of dissolved organic matter as taurine in the ocean.

Clifford EL, Hansell DA, Varela MM, Nieto-Cid M, Herndl GJ, Sintes E.

Limnol Oceanogr. 2017 Nov;62(6):2745-2758. doi: 10.1002/lno.10603. Epub 2017 Jun 20.

19.

Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation.

Pachiadaki MG, Sintes E, Bergauer K, Brown JM, Record NR, Swan BK, Mathyer ME, Hallam SJ, Lopez-Garcia P, Takaki Y, Nunoura T, Woyke T, Herndl GJ, Stepanauskas R.

Science. 2017 Nov 24;358(6366):1046-1051. doi: 10.1126/science.aan8260.

PMID:
29170234
20.

High dark inorganic carbon fixation rates by specific microbial groups in the Atlantic off the Galician coast (NW Iberian margin).

Guerrero-Feijóo E, Sintes E, Herndl GJ, Varela MM.

Environ Microbiol. 2018 Feb;20(2):602-611. doi: 10.1111/1462-2920.13984. Epub 2017 Dec 7.

PMID:
29124858
21.

Corrigendum: Resolving the abundance and air-sea fluxes of airborne microorganisms in the North Atlantic Ocean.

Mayol E, Jiménez MA, Herndl GJ, Duarte CM, Arrieta JM.

Front Microbiol. 2017 Oct 13;8:1971. doi: 10.3389/fmicb.2017.01971. eCollection 2017.

22.

Metagenomic insights into zooplankton-associated bacterial communities.

De Corte D, Srivastava A, Koski M, Garcia JAL, Takaki Y, Yokokawa T, Nunoura T, Elisabeth NH, Sintes E, Herndl GJ.

Environ Microbiol. 2018 Feb;20(2):492-505. doi: 10.1111/1462-2920.13944. Epub 2017 Oct 27.

23.

High viral abundance as a consequence of low viral decay in the Baltic Sea redoxcline.

Köstner N, Scharnreitner L, Jürgens K, Labrenz M, Herndl GJ, Winter C.

PLoS One. 2017 Jun 8;12(6):e0178467. doi: 10.1371/journal.pone.0178467. eCollection 2017.

24.

Microbiome variation in corals with distinct depth distribution ranges across a shallow-mesophotic gradient (15-85 m).

Glasl B, Bongaerts P, Elisabeth NH, Hoegh-Guldberg O, Herndl GJ, Frade PR.

Coral Reefs. 2017;36(2):447-452. doi: 10.1007/s00338-016-1517-x. Epub 2017 Jan 10.

25.

SAR202 Genomes from the Dark Ocean Predict Pathways for the Oxidation of Recalcitrant Dissolved Organic Matter.

Landry Z, Swan BK, Herndl GJ, Stepanauskas R, Giovannoni SJ.

MBio. 2017 Apr 18;8(2). pii: e00413-17. doi: 10.1128/mBio.00413-17.

26.

Chemotaxonomic characterisation of the thaumarchaeal lipidome.

Elling FJ, Könneke M, Nicol GW, Stieglmeier M, Bayer B, Spieck E, de la Torre JR, Becker KW, Thomm M, Prosser JI, Herndl GJ, Schleper C, Hinrichs KU.

Environ Microbiol. 2017 Jul;19(7):2681-2700. doi: 10.1111/1462-2920.13759. Epub 2017 May 19.

PMID:
28419726
27.

Prokaryotic Responses to Ammonium and Organic Carbon Reveal Alternative CO2 Fixation Pathways and Importance of Alkaline Phosphatase in the Mesopelagic North Atlantic.

Baltar F, Lundin D, Palovaara J, Lekunberri I, Reinthaler T, Herndl GJ, Pinhassi J.

Front Microbiol. 2016 Oct 21;7:1670. eCollection 2016.

28.

Eukaryotic microbes, principally fungi and labyrinthulomycetes, dominate biomass on bathypelagic marine snow.

Bochdansky AB, Clouse MA, Herndl GJ.

ISME J. 2017 Feb;11(2):362-373. doi: 10.1038/ismej.2016.113. Epub 2016 Sep 20.

29.

The microbiome of coral surface mucus has a key role in mediating holobiont health and survival upon disturbance.

Glasl B, Herndl GJ, Frade PR.

ISME J. 2016 Sep;10(9):2280-92. doi: 10.1038/ismej.2016.9. Epub 2016 Mar 8.

30.

Dragon kings of the deep sea: marine particles deviate markedly from the common number-size spectrum.

Bochdansky AB, Clouse MA, Herndl GJ.

Sci Rep. 2016 Mar 4;6:22633. doi: 10.1038/srep22633.

31.

Connectivity between surface and deep waters determines prokaryotic diversity in the North Atlantic Deep Water.

Frank AH, Garcia JA, Herndl GJ, Reinthaler T.

Environ Microbiol. 2016 Jun;18(6):2052-63. doi: 10.1111/1462-2920.13237. Epub 2016 Mar 30.

32.

Geographic Distribution of Archaeal Ammonia Oxidizing Ecotypes in the Atlantic Ocean.

Sintes E, De Corte D, Haberleitner E, Herndl GJ.

Front Microbiol. 2016 Feb 9;7:77. doi: 10.3389/fmicb.2016.00077. eCollection 2016.

33.

Archaeal and Bacterial Communities Associated with the Surface Mucus of Caribbean Corals Differ in Their Degree of Host Specificity and Community Turnover Over Reefs.

Frade PR, Roll K, Bergauer K, Herndl GJ.

PLoS One. 2016 Jan 20;11(1):e0144702. doi: 10.1371/journal.pone.0144702. eCollection 2016.

34.

Large-scale distribution of microbial and viral populations in the South Atlantic Ocean.

De Corte D, Sintes E, Yokokawa T, Lekunberri I, Herndl GJ.

Environ Microbiol Rep. 2016 Apr;8(2):305-15. doi: 10.1111/1758-2229.12381. Epub 2016 Feb 16.

35.

Conservation of dissolved organic matter molecular composition during mixing of the deep water masses of the northeast Atlantic Ocean.

Hansman RL, Dittmar T, Herndl GJ.

Mar Chem. 2015 Dec 20;177:288-297. doi: 10.1016/j.marchem.2015.06.001.

36.

Response to Comment on "Dilution limits dissolved organic carbon utilization in the deep ocean".

Arrieta JM, Mayol E, Hansman RL, Herndl GJ, Dittmar T, Duarte CM.

Science. 2015 Dec 18;350(6267):1483. doi: 10.1126/science.aac7249. Epub 2015 Dec 17.

PMID:
26680189
37.

Physiological and genomic characterization of two novel marine thaumarchaeal strains indicates niche differentiation.

Bayer B, Vojvoda J, Offre P, Alves RJ, Elisabeth NH, Garcia JA, Volland JM, Srivastava A, Schleper C, Herndl GJ.

ISME J. 2016 May;10(5):1051-63. doi: 10.1038/ismej.2015.200. Epub 2015 Nov 3.

38.

Macroecological patterns of archaeal ammonia oxidizers in the Atlantic Ocean.

Sintes E, De Corte D, Ouillon N, Herndl GJ.

Mol Ecol. 2015 Oct;24(19):4931-42. doi: 10.1111/mec.13365.

39.

Ocean chemistry. Dilution limits dissolved organic carbon utilization in the deep ocean.

Arrieta JM, Mayol E, Hansman RL, Herndl GJ, Dittmar T, Duarte CM.

Science. 2015 Apr 17;348(6232):331-3. doi: 10.1126/science.1258955. Epub 2015 Mar 19.

40.

Resolving the abundance and air-sea fluxes of airborne microorganisms in the North Atlantic Ocean.

Mayol E, Jiménez MA, Herndl GJ, Duarte CM, Arrieta JM.

Front Microbiol. 2014 Oct 31;5:557. doi: 10.3389/fmicb.2014.00557. eCollection 2014. Erratum in: Front Microbiol. 2017 Oct 13;8:1971.

41.

Comparison of deep-water viromes from the atlantic ocean and the mediterranean sea.

Winter C, Garcia JA, Weinbauer MG, DuBow MS, Herndl GJ.

PLoS One. 2014 Jun 24;9(6):e100600. doi: 10.1371/journal.pone.0100600. eCollection 2014.

42.

Fracture zones in the Mid Atlantic Ridge lead to alterations in prokaryotic and viral parameters in deep-water masses.

Muck S, Griessler T, Köstner N, Klimiuk A, Winter C, Herndl GJ.

Front Microbiol. 2014 Jun 2;5:264. doi: 10.3389/fmicb.2014.00264. eCollection 2014.

43.

Microbial control of the dark end of the biological pump.

Herndl GJ, Reinthaler T.

Nat Geosci. 2013 Sep 1;6(9):718-724. doi: 10.1038/ngeo1921.

44.

Drivers shaping the diversity and biogeography of total and active bacterial communities in the South China Sea.

Zhang Y, Zhao Z, Dai M, Jiao N, Herndl GJ.

Mol Ecol. 2014 May;23(9):2260-74. doi: 10.1111/mec.12739. Epub 2014 Apr 18.

45.

Impact of water mass mixing on the biogeochemistry and microbiology of the Northeast Atlantic Deep Water.

Reinthaler T, Salgado XA, Alvarez M, van Aken HM, Herndl GJ.

Global Biogeochem Cycles. 2013 Dec 1;27(4):1151-1162.

46.

Thick-shelled, grazer-protected diatoms decouple ocean carbon and silicon cycles in the iron-limited Antarctic Circumpolar Current.

Assmy P, Smetacek V, Montresor M, Klaas C, Henjes J, Strass VH, Arrieta JM, Bathmann U, Berg GM, Breitbarth E, Cisewski B, Friedrichs L, Fuchs N, Herndl GJ, Jansen S, Krägefsky S, Latasa M, Peeken I, Röttgers R, Scharek R, Schüller SE, Steigenberger S, Webb A, Wolf-Gladrow D.

Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):20633-8. doi: 10.1073/pnas.1309345110. Epub 2013 Nov 18.

47.

Spatial patterns of bacterial and archaeal communities along the Romanche Fracture Zone (tropical Atlantic).

Lekunberri I, Sintes E, de Corte D, Yokokawa T, Herndl GJ.

FEMS Microbiol Ecol. 2013 Sep;85(3):537-52. doi: 10.1111/1574-6941.12142. Epub 2013 May 16.

48.

Major effect of hydrogen peroxide on bacterioplankton metabolism in the Northeast Atlantic.

Baltar F, Reinthaler T, Herndl GJ, Pinhassi J.

PLoS One. 2013 Apr 12;8(4):e61051. doi: 10.1371/journal.pone.0061051. Print 2013.

49.
50.

Abundance and distribution of archaeal acetyl-CoA/propionyl-CoA carboxylase genes indicative for putatively chemoautotrophic Archaea in the tropical Atlantic's interior.

Bergauer K, Sintes E, van Bleijswijk J, Witte H, Herndl GJ.

FEMS Microbiol Ecol. 2013 Jun;84(3):461-73. doi: 10.1111/1574-6941.12073. Epub 2013 Feb 13.

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