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Items: 15

1.

The oxymonad genome displays canonical eukaryotic complexity in the absence of a mitochondrion.

Karnkowska A, Treitli SC, Brzoň O, Novák L, Vacek V, Soukal P, Barlow LD, Herman EK, Pipaliya SV, Pánek T, Žihala D, Petrželková R, Butenko A, Eme L, Stairs CW, Roger AJ, Eliáš M, Dacks JB, Hampl V.

Mol Biol Evol. 2019 Aug 6. pii: msz147. doi: 10.1093/molbev/msz147. [Epub ahead of print]

PMID:
31387118
2.

Regulation of early endosomes across eukaryotes: Evolution and functional homology of Vps9 proteins.

Herman EK, Ali M, Field MC, Dacks JB.

Traffic. 2018 Jul;19(7):546-563. doi: 10.1111/tra.12570. Epub 2018 Apr 25.

3.

Identification and characterisation of a cryptic Golgi complex in Naegleria gruberi.

Herman EK, Yiangou L, Cantoni DM, Miller CN, Marciano-Cabral F, Anthonyrajah E, Dacks JB, Tsaousis AD.

J Cell Sci. 2018 Apr 9;131(7). pii: jcs213306. doi: 10.1242/jcs.213306.

4.

Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis.

Gentekaki E, Curtis BA, Stairs CW, Klimeš V, Eliáš M, Salas-Leiva DE, Herman EK, Eme L, Arias MC, Henrissat B, Hilliou F, Klute MJ, Suga H, Malik SB, Pightling AW, Kolisko M, Rachubinski RA, Schlacht A, Soanes DM, Tsaousis AD, Archibald JM, Ball SG, Dacks JB, Clark CG, van der Giezen M, Roger AJ.

PLoS Biol. 2017 Sep 11;15(9):e2003769. doi: 10.1371/journal.pbio.2003769. eCollection 2017 Sep.

5.

Resolving the homology-function relationship through comparative genomics of membrane-trafficking machinery and parasite cell biology.

Klinger CM, Ramirez-Macias I, Herman EK, Turkewitz AP, Field MC, Dacks JB.

Mol Biochem Parasitol. 2016 Sep - Oct;209(1-2):88-103. doi: 10.1016/j.molbiopara.2016.07.003. Epub 2016 Jul 19. Review.

6.

A Eukaryote without a Mitochondrial Organelle.

Karnkowska A, Vacek V, Zubáčová Z, Treitli SC, Petrželková R, Eme L, Novák L, Žárský V, Barlow LD, Herman EK, Soukal P, Hroudová M, Doležal P, Stairs CW, Roger AJ, Eliáš M, Dacks JB, Vlček Č, Hampl V.

Curr Biol. 2016 May 23;26(10):1274-84. doi: 10.1016/j.cub.2016.03.053. Epub 2016 May 12.

7.

Losses, Expansions, and Novel Subunit Discovery of Adaptor Protein Complexes in Haptophyte Algae.

Lee LJ, Klute MJ, Herman EK, Read B, Dacks JB.

Protist. 2015 Nov;166(5):585-97. doi: 10.1016/j.protis.2015.07.004. Epub 2015 Aug 6.

PMID:
26519625
8.

Missing pieces of an ancient puzzle: evolution of the eukaryotic membrane-trafficking system.

Schlacht A, Herman EK, Klute MJ, Field MC, Dacks JB.

Cold Spring Harb Perspect Biol. 2014 Oct 1;6(10):a016048. doi: 10.1101/cshperspect.a016048. Review.

9.

Pan genome of the phytoplankton Emiliania underpins its global distribution.

Read BA, Kegel J, Klute MJ, Kuo A, Lefebvre SC, Maumus F, Mayer C, Miller J, Monier A, Salamov A, Young J, Aguilar M, Claverie JM, Frickenhaus S, Gonzalez K, Herman EK, Lin YC, Napier J, Ogata H, Sarno AF, Shmutz J, Schroeder D, de Vargas C, Verret F, von Dassow P, Valentin K, Van de Peer Y, Wheeler G; Emiliania huxleyi Annotation Consortium, Dacks JB, Delwiche CF, Dyhrman ST, Glöckner G, John U, Richards T, Worden AZ, Zhang X, Grigoriev IV.

Nature. 2013 Jul 11;499(7457):209-13. doi: 10.1038/nature12221. Epub 2013 Jun 12.

PMID:
23760476
10.

An ER-directed transcriptional response to unfolded protein stress in the absence of conserved sensor-transducer proteins in Giardia lamblia.

Spycher C, Herman EK, Morf L, Qi W, Rehrauer H, Aquino Fournier C, Dacks JB, Hehl AB.

Mol Microbiol. 2013 May;88(4):754-71. doi: 10.1111/mmi.12218. Epub 2013 Apr 26.

11.

The mitochondrial genome and a 60-kb nuclear DNA segment from Naegleria fowleri, the causative agent of primary amoebic meningoencephalitis.

Herman EK, Greninger AL, Visvesvara GS, Marciano-Cabral F, Dacks JB, Chiu CY.

J Eukaryot Microbiol. 2013 Mar-Apr;60(2):179-91. doi: 10.1111/jeu.12022. Epub 2013 Jan 29.

12.

Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs.

Curtis BA, Tanifuji G, Burki F, Gruber A, Irimia M, Maruyama S, Arias MC, Ball SG, Gile GH, Hirakawa Y, Hopkins JF, Kuo A, Rensing SA, Schmutz J, Symeonidi A, Elias M, Eveleigh RJ, Herman EK, Klute MJ, Nakayama T, Oborník M, Reyes-Prieto A, Armbrust EV, Aves SJ, Beiko RG, Coutinho P, Dacks JB, Durnford DG, Fast NM, Green BR, Grisdale CJ, Hempel F, Henrissat B, Höppner MP, Ishida K, Kim E, Kořený L, Kroth PG, Liu Y, Malik SB, Maier UG, McRose D, Mock T, Neilson JA, Onodera NT, Poole AM, Pritham EJ, Richards TA, Rocap G, Roy SW, Sarai C, Schaack S, Shirato S, Slamovits CH, Spencer DF, Suzuki S, Worden AZ, Zauner S, Barry K, Bell C, Bharti AK, Crow JA, Grimwood J, Kramer R, Lindquist E, Lucas S, Salamov A, McFadden GI, Lane CE, Keeling PJ, Gray MW, Grigoriev IV, Archibald JM.

Nature. 2012 Dec 6;492(7427):59-65. doi: 10.1038/nature11681. Epub 2012 Nov 28.

PMID:
23201678
13.

Evolutionary reconstruction of the retromer complex and its function in Trypanosoma brucei.

Koumandou VL, Klute MJ, Herman EK, Nunez-Miguel R, Dacks JB, Field MC.

J Cell Sci. 2011 May 1;124(Pt 9):1496-509. doi: 10.1242/jcs.081596.

14.

Multivesicular bodies in the enigmatic amoeboflagellate Breviata anathema and the evolution of ESCRT 0.

Herman EK, Walker G, van der Giezen M, Dacks JB.

J Cell Sci. 2011 Feb 15;124(Pt 4):613-21. doi: 10.1242/jcs.078436. Epub 2011 Jan 25.

15.

Comparison of flowpaths to a well and spring in a karst aquifer.

Toran L, Herman EK, White WB.

Ground Water. 2007 May-Jun;45(3):281-7.

PMID:
17470117

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