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Items: 41

1.

Experimental and computational framework for a dynamic protein atlas of human cell division.

Cai Y, Hossain MJ, Hériché JK, Politi AZ, Walther N, Koch B, Wachsmuth M, Nijmeijer B, Kueblbeck M, Martinic-Kavur M, Ladurner R, Alexander S, Peters JM, Ellenberg J.

Nature. 2018 Sep;561(7723):411-415. doi: 10.1038/s41586-018-0518-z. Epub 2018 Sep 10.

PMID:
30202089
2.

Correction: Correlative live and super-resolution imaging reveals the dynamic structure of replication domains.

Xiang W, Roberti MJ, Hériché JK, Huet S, Alexander S, Ellenberg J.

J Cell Biol. 2018 Sep 3;217(9):3315-3316. doi: 10.1083/JCB.20170907408082018c. Epub 2018 Aug 22. No abstract available.

3.

The replicative helicase MCM recruits cohesin acetyltransferase ESCO2 to mediate centromeric sister chromatid cohesion.

Ivanov MP, Ladurner R, Poser I, Beveridge R, Rampler E, Hudecz O, Novatchkova M, Hériché JK, Wutz G, van der Lelij P, Kreidl E, Hutchins JR, Axelsson-Ekker H, Ellenberg J, Hyman AA, Mechtler K, Peters JM.

EMBO J. 2018 Aug 1;37(15). pii: e97150. doi: 10.15252/embj.201797150. Epub 2018 Jun 21.

PMID:
29930102
4.

Correlative live and super-resolution imaging reveals the dynamic structure of replication domains.

Xiang W, Roberti MJ, Hériché JK, Huet S, Alexander S, Ellenberg J.

J Cell Biol. 2018 Jun 4;217(6):1973-1984. doi: 10.1083/jcb.201709074. Epub 2018 Mar 23. Erratum in: J Cell Biol. 2018 Sep 3;217(9):3315-3316.

5.

Postmitotic nuclear pore assembly proceeds by radial dilation of small membrane openings.

Otsuka S, Steyer AM, Schorb M, Hériché JK, Hossain MJ, Sethi S, Kueblbeck M, Schwab Y, Beck M, Ellenberg J.

Nat Struct Mol Biol. 2018 Jan;25(1):21-28. doi: 10.1038/s41594-017-0001-9. Epub 2017 Nov 27.

PMID:
29323269
6.

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.

McMurry JA, Juty N, Blomberg N, Burdett T, Conlin T, Conte N, Courtot M, Deck J, Dumontier M, Fellows DK, Gonzalez-Beltran A, Gormanns P, Grethe J, Hastings J, Hériché JK, Hermjakob H, Ison JC, Jimenez RC, Jupp S, Kunze J, Laibe C, Le Novère N, Malone J, Martin MJ, McEntyre JR, Morris C, Muilu J, Müller W, Rocca-Serra P, Sansone SA, Sariyar M, Snoep JL, Soiland-Reyes S, Stanford NJ, Swainston N, Washington N, Williams AR, Wimalaratne SM, Winfree LM, Wolstencroft K, Goble C, Mungall CJ, Haendel MA, Parkinson H.

PLoS Biol. 2017 Jun 29;15(6):e2001414. doi: 10.1371/journal.pbio.2001414. eCollection 2017 Jun.

7.

Erratum to: How can functional annotations be derived from profiles of phenotypic annotations?

Serrano-Solano B, Ramos AD, Hériché JK, Ranea JA.

BMC Bioinformatics. 2017 Mar 27;18(1):194. doi: 10.1186/s12859-017-1607-y. No abstract available.

8.

How can functional annotations be derived from profiles of phenotypic annotations?

Serrano-Solano B, Díaz Ramos A, Hériché JK, Ranea JAG.

BMC Bioinformatics. 2017 Feb 10;18(1):96. doi: 10.1186/s12859-017-1503-5. Erratum in: BMC Bioinformatics. 2017 Mar 27;18(1):194.

9.

Profiling DNA damage response following mitotic perturbations.

S Pedersen R, Karemore G, Gudjonsson T, Rask MB, Neumann B, Hériché JK, Pepperkok R, Ellenberg J, Gerlich DW, Lukas J, Lukas C.

Nat Commun. 2016 Dec 15;7:13887. doi: 10.1038/ncomms13887.

10.

The cellular microscopy phenotype ontology.

Jupp S, Malone J, Burdett T, Heriche JK, Williams E, Ellenberg J, Parkinson H, Rustici G.

J Biomed Semantics. 2016 May 18;7:28. doi: 10.1186/s13326-016-0074-0. eCollection 2016.

11.

ARHGEF17 is an essential spindle assembly checkpoint factor that targets Mps1 to kinetochores.

Isokane M, Walter T, Mahen R, Nijmeijer B, Hériché JK, Miura K, Maffini S, Ivanov MP, Kitajima TS, Peters JM, Ellenberg J.

J Cell Biol. 2016 Mar 14;212(6):647-59. doi: 10.1083/jcb.201408089. Epub 2016 Mar 7.

12.

FUN-L: gene prioritization for RNAi screens.

Lees JG, Hériché JK, Morilla I, Fernández JM, Adler P, Krallinger M, Vilo J, Valencia A, Ellenberg J, Ranea JA, Orengo C.

Bioinformatics. 2015 Jun 15;31(12):2052-3. doi: 10.1093/bioinformatics/btv073. Epub 2015 Feb 8.

PMID:
25667547
13.

An open science peer review oath.

Aleksic J, Alexa A, Attwood TK, Chue Hong N, Dahlö M, Davey R, Dinkel H, Förstner KU, Grigorov I, Hériché JK, Lahti L, MacLean D, Markie ML, Molloy J, Schneider MV, Scott C, Smith-Unna R, Vieira BM; as part of the AllBio: Open Science & Reproducibility Best Practice Workshop.

Version 2. F1000Res. 2014 Nov 12 [revised 2015 Jan 1];3:271. doi: 10.12688/f1000research.5686.2. eCollection 2014.

14.

A 3D cellular context for the macromolecular world.

Patwardhan A, Ashton A, Brandt R, Butcher S, Carzaniga R, Chiu W, Collinson L, Doux P, Duke E, Ellisman MH, Franken E, Grünewald K, Heriche JK, Koster A, Kühlbrandt W, Lagerstedt I, Larabell C, Lawson CL, Saibil HR, Sanz-García E, Subramaniam S, Verkade P, Swedlow JR, Kleywegt GJ.

Nat Struct Mol Biol. 2014 Oct;21(10):841-5. doi: 10.1038/nsmb.2897. No abstract available.

15.

Integration of biological data by kernels on graph nodes allows prediction of new genes involved in mitotic chromosome condensation.

Hériché JK, Lees JG, Morilla I, Walter T, Petrova B, Roberti MJ, Hossain MJ, Adler P, Fernández JM, Krallinger M, Haering CH, Vilo J, Valencia A, Ranea JA, Orengo C, Ellenberg J.

Mol Biol Cell. 2014 Aug 15;25(16):2522-36. doi: 10.1091/mbc.E13-04-0221. Epub 2014 Jun 18.

16.

Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay.

Pau G, Walter T, Neumann B, Hériché JK, Ellenberg J, Huber W.

BMC Bioinformatics. 2013 Oct 16;14:308. doi: 10.1186/1471-2105-14-308.

17.

High-content siRNA screen reveals global ENaC regulators and potential cystic fibrosis therapy targets.

Almaça J, Faria D, Sousa M, Uliyakina I, Conrad C, Sirianant L, Clarke LA, Martins JP, Santos M, Heriché JK, Huber W, Schreiber R, Pepperkok R, Kunzelmann K, Amaral MD.

Cell. 2013 Sep 12;154(6):1390-400. doi: 10.1016/j.cell.2013.08.045.

18.

Quantitative analysis of chromosome condensation in fission yeast.

Petrova B, Dehler S, Kruitwagen T, Hériché JK, Miura K, Haering CH.

Mol Cell Biol. 2013 Mar;33(5):984-98. doi: 10.1128/MCB.01400-12. Epub 2012 Dec 21.

19.

TRIP12 and UBR5 suppress spreading of chromatin ubiquitylation at damaged chromosomes.

Gudjonsson T, Altmeyer M, Savic V, Toledo L, Dinant C, Grøfte M, Bartkova J, Poulsen M, Oka Y, Bekker-Jensen S, Mailand N, Neumann B, Heriche JK, Shearer R, Saunders D, Bartek J, Lukas J, Lukas C.

Cell. 2012 Aug 17;150(4):697-709. doi: 10.1016/j.cell.2012.06.039. Epub 2012 Aug 9. Erratum in: Cell. 2014 Dec 4;159(6):1476-7.

20.

Genome-wide RNAi screening identifies human proteins with a regulatory function in the early secretory pathway.

Simpson JC, Joggerst B, Laketa V, Verissimo F, Cetin C, Erfle H, Bexiga MG, Singan VR, Hériché JK, Neumann B, Mateos A, Blake J, Bechtel S, Benes V, Wiemann S, Ellenberg J, Pepperkok R.

Nat Cell Biol. 2012 Jun 3;14(7):764-74. doi: 10.1038/ncb2510.

PMID:
22660414
21.

RNAi screen in apoptotic cancer cell-stimulated human macrophages reveals co-regulation of IL-6/IL-10 expression.

Ley S, Weigert A, Hériché JK, Mille-Baker B, Janssen RA, Brüne B.

Immunobiology. 2013 Jan;218(1):40-51. doi: 10.1016/j.imbio.2012.01.019. Epub 2012 Feb 2.

PMID:
22445721
22.

High-efficiency counterselection recombineering for site-directed mutagenesis in bacterial artificial chromosomes.

Bird AW, Erler A, Fu J, Hériché JK, Maresca M, Zhang Y, Hyman AA, Stewart AF.

Nat Methods. 2011 Dec 4;9(1):103-9. doi: 10.1038/nmeth.1803.

PMID:
22138824
23.

Nucleoporin NUP153 guards genome integrity by promoting nuclear import of 53BP1.

Moudry P, Lukas C, Macurek L, Neumann B, Heriche JK, Pepperkok R, Ellenberg J, Hodny Z, Lukas J, Bartek J.

Cell Death Differ. 2012 May;19(5):798-807. doi: 10.1038/cdd.2011.150. Epub 2011 Nov 11.

24.

Systematic phosphorylation analysis of human mitotic protein complexes.

Hegemann B, Hutchins JR, Hudecz O, Novatchkova M, Rameseder J, Sykora MM, Liu S, Mazanek M, Lénárt P, Hériché JK, Poser I, Kraut N, Hyman AA, Yaffe MB, Mechtler K, Peters JM.

Sci Signal. 2011 Nov 8;4(198):rs12. doi: 10.1126/scisignal.2001993.

25.

Systematic computational prediction of protein interaction networks.

Lees JG, Heriche JK, Morilla I, Ranea JA, Orengo CA.

Phys Biol. 2011 Jun;8(3):035008. doi: 10.1088/1478-3975/8/3/035008. Epub 2011 May 13.

PMID:
21572181
26.

Finding and sharing: new approaches to registries of databases and services for the biomedical sciences.

Smedley D, Schofield P, Chen CK, Aidinis V, Ainali C, Bard J, Balling R, Birney E, Blake A, Bongcam-Rudloff E, Brookes AJ, Cesareni G, Chandras C, Eppig J, Flicek P, Gkoutos G, Greenaway S, Gruenberger M, Hériché JK, Lyall A, Mallon AM, Muddyman D, Reisinger F, Ringwald M, Rosenthal N, Schughart K, Swertz M, Thorisson GA, Zouberakis M, Hancock JM.

Database (Oxford). 2010 Jul 6;2010:baq014. doi: 10.1093/database/baq014.

27.

Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes.

Neumann B, Walter T, Hériché JK, Bulkescher J, Erfle H, Conrad C, Rogers P, Poser I, Held M, Liebel U, Cetin C, Sieckmann F, Pau G, Kabbe R, Wünsche A, Satagopam V, Schmitz MH, Chapuis C, Gerlich DW, Schneider R, Eils R, Huber W, Peters JM, Hyman AA, Durbin R, Pepperkok R, Ellenberg J.

Nature. 2010 Apr 1;464(7289):721-7. doi: 10.1038/nature08869.

28.

Systematic analysis of human protein complexes identifies chromosome segregation proteins.

Hutchins JR, Toyoda Y, Hegemann B, Poser I, Hériché JK, Sykora MM, Augsburg M, Hudecz O, Buschhorn BA, Bulkescher J, Conrad C, Comartin D, Schleiffer A, Sarov M, Pozniakovsky A, Slabicki MM, Schloissnig S, Steinmacher I, Leuschner M, Ssykor A, Lawo S, Pelletier L, Stark H, Nasmyth K, Ellenberg J, Durbin R, Buchholz F, Mechtler K, Hyman AA, Peters JM.

Science. 2010 Apr 30;328(5978):593-9. doi: 10.1126/science.1181348. Epub 2010 Apr 1.

29.

Visualization of image data from cells to organisms.

Walter T, Shattuck DW, Baldock R, Bastin ME, Carpenter AE, Duce S, Ellenberg J, Fraser A, Hamilton N, Pieper S, Ragan MA, Schneider JE, Tomancak P, Hériché JK.

Nat Methods. 2010 Mar;7(3 Suppl):S26-41. doi: 10.1038/nmeth.1431. Review.

30.

Visualizing biological data-now and in the future.

O'Donoghue SI, Gavin AC, Gehlenborg N, Goodsell DS, Hériché JK, Nielsen CB, North C, Olson AJ, Procter JB, Shattuck DW, Walter T, Wong B.

Nat Methods. 2010 Mar;7(3 Suppl):S2-4. doi: 10.1038/nmeth.f.301.

PMID:
20195254
31.

Automatic identification and clustering of chromosome phenotypes in a genome wide RNAi screen by time-lapse imaging.

Walter T, Held M, Neumann B, Hériché JK, Conrad C, Pepperkok R, Ellenberg J.

J Struct Biol. 2010 Apr;170(1):1-9. doi: 10.1016/j.jsb.2009.10.004. Epub 2009 Oct 23.

PMID:
19854275
32.

BAC TransgeneOmics: a high-throughput method for exploration of protein function in mammals.

Poser I, Sarov M, Hutchins JR, Hériché JK, Toyoda Y, Pozniakovsky A, Weigl D, Nitzsche A, Hegemann B, Bird AW, Pelletier L, Kittler R, Hua S, Naumann R, Augsburg M, Sykora MM, Hofemeister H, Zhang Y, Nasmyth K, White KP, Dietzel S, Mechtler K, Durbin R, Stewart AF, Peters JM, Buchholz F, Hyman AA.

Nat Methods. 2008 May;5(5):409-15. doi: 10.1038/nmeth.1199. Epub 2008 Apr 6. Erratum in: Nat Methods. 2008 Aug;5(8):748.

33.

TreeFam: 2008 Update.

Ruan J, Li H, Chen Z, Coghlan A, Coin LJ, Guo Y, Hériché JK, Hu Y, Kristiansen K, Li R, Liu T, Moses A, Qin J, Vang S, Vilella AJ, Ureta-Vidal A, Bolund L, Wang J, Durbin R.

Nucleic Acids Res. 2008 Jan;36(Database issue):D735-40. Epub 2007 Dec 1.

35.

TreeFam: a curated database of phylogenetic trees of animal gene families.

Li H, Coghlan A, Ruan J, Coin LJ, Hériché JK, Osmotherly L, Li R, Liu T, Zhang Z, Bolund L, Wong GK, Zheng W, Dehal P, Wang J, Durbin R.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D572-80.

36.
37.

Protein kinase CK2alpha is a target for the Abl and Bcr-Abl tyrosine kinases.

Hériché JK, Chambaz EM.

Oncogene. 1998 Jul 9;17(1):13-8.

39.

Regulation of protein phosphatase 2A by direct interaction with casein kinase 2alpha.

Hériché JK, Lebrin F, Rabilloud T, Leroy D, Chambaz EM, Goldberg Y.

Science. 1997 May 9;276(5314):952-5.

40.

[Has protein kinase CK2 a role in the intracellular mitogenic signalling?].

Filhol O, Leroy D, Valéro E, Loue-Mackenbach P, Hériché JK, Goldberg Y, Cochet C, Chambaz EM.

C R Seances Soc Biol Fil. 1995;189(1):59-69. French.

PMID:
7648367
41.

Modulation of the molecular organization and activity of casein kinase 2 by naturally occurring polyamines.

Leroy D, Valero E, Filhol O, Heriché JK, Goldberg Y, Chambaz EM, Cochet C.

Cell Mol Biol Res. 1994;40(5-6):441-53.

PMID:
7735318

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