Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 46

1.

Selection of Appropriate Metagenome Taxonomic Classifiers for Ancient Microbiome Research.

Velsko IM, Frantz LAF, Herbig A, Larson G, Warinner C.

mSystems. 2018 Jul 17;3(4). pii: e00080-18. doi: 10.1128/mSystems.00080-18. eCollection 2018 Jul-Aug.

2.

Historic Treponema pallidum genomes from Colonial Mexico retrieved from archaeological remains.

Schuenemann VJ, Kumar Lankapalli A, Barquera R, Nelson EA, Iraíz Hernández D, Acuña Alonzo V, Bos KI, Márquez Morfín L, Herbig A, Krause J.

PLoS Negl Trop Dis. 2018 Jun 21;12(6):e0006447. doi: 10.1371/journal.pntd.0006447. eCollection 2018 Jun.

3.

Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague.

Spyrou MA, Tukhbatova RI, Wang CC, Valtueña AA, Lankapalli AK, Kondrashin VV, Tsybin VA, Khokhlov A, Kühnert D, Herbig A, Bos KI, Krause J.

Nat Commun. 2018 Jun 8;9(1):2234. doi: 10.1038/s41467-018-04550-9.

4.

Ancient genomes reveal a high diversity of Mycobacterium leprae in medieval Europe.

Schuenemann VJ, Avanzi C, Krause-Kyora B, Seitz A, Herbig A, Inskip S, Bonazzi M, Reiter E, Urban C, Dangvard Pedersen D, Taylor GM, Singh P, Stewart GR, Velemínský P, Likovsky J, Marcsik A, Molnár E, Pálfi G, Mariotti V, Riga A, Belcastro MG, Boldsen JL, Nebel A, Mays S, Donoghue HD, Zakrzewski S, Benjak A, Nieselt K, Cole ST, Krause J.

PLoS Pathog. 2018 May 10;14(5):e1006997. doi: 10.1371/journal.ppat.1006997. eCollection 2018 May.

5.

Neolithic and medieval virus genomes reveal complex evolution of hepatitis B.

Krause-Kyora B, Susat J, Key FM, Kühnert D, Bosse E, Immel A, Rinne C, Kornell SC, Yepes D, Franzenburg S, Heyne HO, Meier T, Lösch S, Meller H, Friederich S, Nicklisch N, Alt KW, Schreiber S, Tholey A, Herbig A, Nebel A, Krause J.

Elife. 2018 May 10;7. pii: e36666. doi: 10.7554/eLife.36666.

6.

Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico.

Vågene ÅJ, Herbig A, Campana MG, Robles García NM, Warinner C, Sabin S, Spyrou MA, Andrades Valtueña A, Huson D, Tuross N, Bos KI, Krause J.

Nat Ecol Evol. 2018 Mar;2(3):520-528. doi: 10.1038/s41559-017-0446-6. Epub 2018 Jan 15.

PMID:
29335577
7.

Central European Woolly Mammoth Population Dynamics: Insights from Late Pleistocene Mitochondrial Genomes.

Fellows Yates JA, Drucker DG, Reiter E, Heumos S, Welker F, Münzel SC, Wojtal P, Lázničková-Galetová M, Conard NJ, Herbig A, Bocherens H, Krause J.

Sci Rep. 2017 Dec 18;7(1):17714. doi: 10.1038/s41598-017-17723-1.

8.

AureoWiki ̵ The repository of the Staphylococcus aureus research and annotation community.

Fuchs S, Mehlan H, Bernhardt J, Hennig A, Michalik S, Surmann K, Pané-Farré J, Giese A, Weiss S, Backert L, Herbig A, Nieselt K, Hecker M, Völker U, Mäder U.

Int J Med Microbiol. 2018 Aug;308(6):558-568. doi: 10.1016/j.ijmm.2017.11.011. Epub 2017 Nov 24.

9.

The Stone Age Plague and Its Persistence in Eurasia.

Andrades Valtueña A, Mittnik A, Key FM, Haak W, Allmäe R, Belinskij A, Daubaras M, Feldman M, Jankauskas R, Janković I, Massy K, Novak M, Pfrengle S, Reinhold S, Šlaus M, Spyrou MA, Szécsényi-Nagy A, Tõrv M, Hansen S, Bos KI, Stockhammer PW, Herbig A, Krause J.

Curr Biol. 2017 Dec 4;27(23):3683-3691.e8. doi: 10.1016/j.cub.2017.10.025. Epub 2017 Nov 22.

PMID:
29174893
10.

Mining Metagenomic Data Sets for Ancient DNA: Recommended Protocols for Authentication.

Key FM, Posth C, Krause J, Herbig A, Bos KI.

Trends Genet. 2017 Aug;33(8):508-520. doi: 10.1016/j.tig.2017.05.005. Epub 2017 Jul 5. Review.

PMID:
28688671
11.

dRNA-seq transcriptional profiling of the FK506 biosynthetic gene cluster in Streptomyces tsukubaensis NRRL18488 and general analysis of the transcriptome.

Bauer JS, Fillinger S, Förstner K, Herbig A, Jones AC, Flinspach K, Sharma C, Gross H, Nieselt K, Apel AK.

RNA Biol. 2017 Nov 2;14(11):1617-1626. doi: 10.1080/15476286.2017.1341020. Epub 2017 Jul 31.

12.

A Robust Framework for Microbial Archaeology.

Warinner C, Herbig A, Mann A, Fellows Yates JA, Weiß CL, Burbano HA, Orlando L, Krause J.

Annu Rev Genomics Hum Genet. 2017 Aug 31;18:321-356. doi: 10.1146/annurev-genom-091416-035526. Epub 2017 Apr 26. Review.

13.

Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster.

Arora N, Schuenemann VJ, Jäger G, Peltzer A, Seitz A, Herbig A, Strouhal M, Grillová L, Sánchez-Busó L, Kühnert D, Bos KI, Davis LR, Mikalová L, Bruisten S, Komericki P, French P, Grant PR, Pando MA, Vaulet LG, Fermepin MR, Martinez A, Centurion Lara A, Giacani L, Norris SJ, Šmajs D, Bosshard PP, González-Candelas F, Nieselt K, Krause J, Bagheri HC.

Nat Microbiol. 2016 Dec 5;2:16245. doi: 10.1038/nmicrobiol.2016.245.

14.

Factors that impact the stability of vitamin C at intermediate temperatures in a food matrix.

Herbig AL, Renard CM.

Food Chem. 2017 Apr 1;220:444-451. doi: 10.1016/j.foodchem.2016.10.012. Epub 2016 Oct 4.

PMID:
27855924
15.

Effect of X-ray irradiation on ancient DNA in sub-fossil bones - Guidelines for safe X-ray imaging.

Immel A, Le Cabec A, Bonazzi M, Herbig A, Temming H, Schuenemann VJ, Bos KI, Langbein F, Harvati K, Bridault A, Pion G, Julien MA, Krotova O, Conard NJ, Münzel SC, Drucker DG, Viola B, Hublin JJ, Tafforeau P, Krause J.

Sci Rep. 2016 Sep 12;6:32969. doi: 10.1038/srep32969.

16.

A High-Coverage Yersinia pestis Genome from a Sixth-Century Justinianic Plague Victim.

Feldman M, Harbeck M, Keller M, Spyrou MA, Rott A, Trautmann B, Scholz HC, Päffgen B, Peters J, McCormick M, Bos K, Herbig A, Krause J.

Mol Biol Evol. 2016 Nov;33(11):2911-2923. doi: 10.1093/molbev/msw170. Epub 2016 Aug 30.

17.

Historical Y. pestis Genomes Reveal the European Black Death as the Source of Ancient and Modern Plague Pandemics.

Spyrou MA, Tukhbatova RI, Feldman M, Drath J, Kacki S, Beltrán de Heredia J, Arnold S, Sitdikov AG, Castex D, Wahl J, Gazimzyanov IR, Nurgaliev DK, Herbig A, Bos KI, Krause J.

Cell Host Microbe. 2016 Jun 8;19(6):874-81. doi: 10.1016/j.chom.2016.05.012.

18.

EAGER: efficient ancient genome reconstruction.

Peltzer A, Jäger G, Herbig A, Seitz A, Kniep C, Krause J, Nieselt K.

Genome Biol. 2016 Mar 31;17:60. doi: 10.1186/s13059-016-0918-z.

19.

Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus.

Bos KI, Herbig A, Sahl J, Waglechner N, Fourment M, Forrest SA, Klunk J, Schuenemann VJ, Poinar D, Kuch M, Golding GB, Dutour O, Keim P, Wagner DM, Holmes EC, Krause J, Poinar HN.

Elife. 2016 Jan 21;5:e12994. doi: 10.7554/eLife.12994.

20.

The 5300-year-old Helicobacter pylori genome of the Iceman.

Maixner F, Krause-Kyora B, Turaev D, Herbig A, Hoopmann MR, Hallows JL, Kusebauch U, Vigl EE, Malfertheiner P, Megraud F, O'Sullivan N, Cipollini G, Coia V, Samadelli M, Engstrand L, Linz B, Moritz RL, Grimm R, Krause J, Nebel A, Moodley Y, Rattei T, Zink A.

Science. 2016 Jan 8;351(6269):162-165. doi: 10.1126/science.aad2545.

21.

A novel point mutation promotes growth phase-dependent daptomycin tolerance in Staphylococcus aureus.

Mechler L, Herbig A, Paprotka K, Fraunholz M, Nieselt K, Bertram R.

Antimicrob Agents Chemother. 2015 Sep;59(9):5366-76. doi: 10.1128/AAC.00643-15. Epub 2015 Jun 22.

22.

Mitochondrial Genomes of Giant Deers Suggest their Late Survival in Central Europe.

Immel A, Drucker DG, Bonazzi M, Jahnke TK, Münzel SC, Schuenemann VJ, Herbig A, Kind CJ, Krause J.

Sci Rep. 2015 Jun 8;5:10853. doi: 10.1038/srep10853.

23.

Insight into the evolution and origin of leprosy bacilli from the genome sequence of Mycobacterium lepromatosis.

Singh P, Benjak A, Schuenemann VJ, Herbig A, Avanzi C, Busso P, Nieselt K, Krause J, Vera-Cabrera L, Cole ST.

Proc Natl Acad Sci U S A. 2015 Apr 7;112(14):4459-64. doi: 10.1073/pnas.1421504112. Epub 2015 Mar 23.

24.

Parallel detection of ancient pathogens via array-based DNA capture.

Bos KI, Jäger G, Schuenemann VJ, Vågene ÅJ, Spyrou MA, Herbig A, Nieselt K, Krause J.

Philos Trans R Soc Lond B Biol Sci. 2015 Jan 19;370(1660):20130375. doi: 10.1098/rstb.2013.0375.

25.

Global transcriptional start site mapping using differential RNA sequencing reveals novel antisense RNAs in Escherichia coli.

Thomason MK, Bischler T, Eisenbart SK, Förstner KU, Zhang A, Herbig A, Nieselt K, Sharma CM, Storz G.

J Bacteriol. 2015 Jan 1;197(1):18-28. doi: 10.1128/JB.02096-14. Epub 2014 Sep 29.

26.

Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis.

Bos KI, Harkins KM, Herbig A, Coscolla M, Weber N, Comas I, Forrest SA, Bryant JM, Harris SR, Schuenemann VJ, Campbell TJ, Majander K, Wilbur AK, Guichon RA, Wolfe Steadman DL, Cook DC, Niemann S, Behr MA, Zumarraga M, Bastida R, Huson D, Nieselt K, Young D, Parkhill J, Buikstra JE, Gagneux S, Stone AC, Krause J.

Nature. 2014 Oct 23;514(7523):494-7. doi: 10.1038/nature13591. Epub 2014 Aug 20.

27.

Metabolic and transcriptional activities of Staphylococcus aureus challenged with high-doses of daptomycin.

Lechner S, Prax M, Lange B, Huber C, Eisenreich W, Herbig A, Nieselt K, Bertram R.

Int J Med Microbiol. 2014 Nov;304(8):931-40. doi: 10.1016/j.ijmm.2014.05.008. Epub 2014 May 28.

PMID:
24980509
28.

Altering gene expression by aminocoumarins: the role of DNA supercoiling in Staphylococcus aureus.

Schröder W, Bernhardt J, Marincola G, Klein-Hitpass L, Herbig A, Krupp G, Nieselt K, Wolz C.

BMC Genomics. 2014 Apr 16;15:291. doi: 10.1186/1471-2164-15-291.

29.

Genome-wide comparison of medieval and modern Mycobacterium leprae.

Schuenemann VJ, Singh P, Mendum TA, Krause-Kyora B, Jäger G, Bos KI, Herbig A, Economou C, Benjak A, Busso P, Nebel A, Boldsen JL, Kjellström A, Wu H, Stewart GR, Taylor GM, Bauer P, Lee OY, Wu HH, Minnikin DE, Besra GS, Tucker K, Roffey S, Sow SO, Cole ST, Nieselt K, Krause J.

Science. 2013 Jul 12;341(6142):179-83. doi: 10.1126/science.1238286. Epub 2013 Jun 13.

30.

High-resolution transcriptome maps reveal strain-specific regulatory features of multiple Campylobacter jejuni isolates.

Dugar G, Herbig A, Förstner KU, Heidrich N, Reinhardt R, Nieselt K, Sharma CM.

PLoS Genet. 2013 May;9(5):e1003495. doi: 10.1371/journal.pgen.1003495. Epub 2013 May 16.

31.

Characterization of a mazEF toxin-antitoxin homologue from Staphylococcus equorum.

Schuster CF, Park JH, Prax M, Herbig A, Nieselt K, Rosenstein R, Inouye M, Bertram R.

J Bacteriol. 2013 Jan;195(1):115-25. doi: 10.1128/JB.00400-12. Epub 2012 Oct 26.

32.
33.

GenomeRing: alignment visualization based on SuperGenome coordinates.

Herbig A, Jäger G, Battke F, Nieselt K.

Bioinformatics. 2012 Jun 15;28(12):i7-15. doi: 10.1093/bioinformatics/bts217.

34.

Influence of calcium on β-lactoglobulin denaturation kinetics: Implications in unfolding and aggregation mechanisms.

Petit J, Herbig AL, Moreau A, Delaplace G.

J Dairy Sci. 2011 Dec;94(12):5794-810. doi: 10.3168/jds.2011-4470.

PMID:
22118070
35.

The PII protein GlnK is a pleiotropic regulator for morphological differentiation and secondary metabolism in Streptomyces coelicolor.

Waldvogel E, Herbig A, Battke F, Amin R, Nentwich M, Nieselt K, Ellingsen TE, Wentzel A, Hodgson DA, Wohlleben W, Mast Y.

Appl Microbiol Biotechnol. 2011 Dec;92(6):1219-36. doi: 10.1007/s00253-011-3644-1. Epub 2011 Oct 28.

PMID:
22033567
36.

GaggleBridge: collaborative data analysis.

Battke F, Symons S, Herbig A, Nieselt K.

Bioinformatics. 2011 Sep 15;27(18):2612-3. doi: 10.1093/bioinformatics/btr429. Epub 2011 Jul 19.

PMID:
21775306
37.

A technical platform for generating reproducible expression data from Streptomyces coelicolor batch cultivations.

Battke F, Herbig A, Wentzel A, Jakobsen OM, Bonin M, Hodgson DA, Wohlleben W, Ellingsen TE; STREAM Consortium, Nieselt K.

Adv Exp Med Biol. 2011;696:3-15. doi: 10.1007/978-1-4419-7046-6_1.

PMID:
21431541
38.

nocoRNAc: characterization of non-coding RNAs in prokaryotes.

Herbig A, Nieselt K.

BMC Bioinformatics. 2011 Jan 31;12:40. doi: 10.1186/1471-2105-12-40.

39.

The dynamic architecture of the metabolic switch in Streptomyces coelicolor.

Nieselt K, Battke F, Herbig A, Bruheim P, Wentzel A, Jakobsen ØM, Sletta H, Alam MT, Merlo ME, Moore J, Omara WA, Morrissey ER, Juarez-Hermosillo MA, Rodríguez-García A, Nentwich M, Thomas L, Iqbal M, Legaie R, Gaze WH, Challis GL, Jansen RC, Dijkhuizen L, Rand DA, Wild DL, Bonin M, Reuther J, Wohlleben W, Smith MC, Burroughs NJ, Martín JF, Hodgson DA, Takano E, Breitling R, Ellingsen TE, Wellington EM.

BMC Genomics. 2010 Jan 6;11:10. doi: 10.1186/1471-2164-11-10.

40.

Zap1 activation domain 1 and its role in controlling gene expression in response to cellular zinc status.

Herbig A, Bird AJ, Swierczek S, McCall K, Mooney M, Wu CY, Winge DR, Eide DJ.

Mol Microbiol. 2005 Aug;57(3):834-46.

41.
43.

New perspectives on folate catabolism.

Suh JR, Herbig AK, Stover PJ.

Annu Rev Nutr. 2001;21:255-82. Review.

PMID:
11375437
44.

Bacillus subtilis contains multiple Fur homologues: identification of the iron uptake (Fur) and peroxide regulon (PerR) repressors.

Bsat N, Herbig A, Casillas-Martinez L, Setlow P, Helmann JD.

Mol Microbiol. 1998 Jul;29(1):189-98.

45.

[Causative agents and vectors of tropical diseases].

GEIGY R, HERBIG A.

Acta Trop Suppl. 1955;6:3-472. German. No abstract available.

PMID:
14387818
46.

Die Hypertrophie der Organe beim Weibchen von Tunga penetrans.

GEIGY R, HERBIG A.

Acta Trop. 1949;6(3):246-62. Undetermined Language. No abstract available.

PMID:
18148577

Supplemental Content

Loading ...
Support Center