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Items: 15

1.

Towards Translational Epidemiology: Next-Generation Sequencing and Phylogeography as Epidemiological Mainstays.

Hepp CM.

mSystems. 2019 Jun 11;4(3). pii: e00119-19. doi: 10.1128/mSystems.00119-19.

2.

Phylogenetic analysis of West Nile Virus in Maricopa County, Arizona: Evidence for dynamic behavior of strains in two major lineages in the American Southwest.

Hepp CM, Cocking JH, Valentine M, Young SJ, Damian D, Samuels-Crow KE, Sheridan K, Fofanov VY, Furstenau TN, Busch JD, Erickson DE, Lancione RC, Smith K, Will J, Townsend J, Keim PS, Engelthaler DM.

PLoS One. 2018 Nov 26;13(11):e0205801. doi: 10.1371/journal.pone.0205801. eCollection 2018.

3.

Health Disparities and Converging Epidemics in Jail Populations: Protocol for a Mixed-Methods Study.

Trotter Ii RT, Camplain R, Eaves ER, Fofanov VY, Dmitrieva NO, Hepp CM, Warren M, Barrios BA, Pagel N, Mayer A, Baldwin JA.

JMIR Res Protoc. 2018 Oct 24;7(10):e10337. doi: 10.2196/10337.

4.

Guano exposed: Impact of aerobic conditions on bat fecal microbiota.

Fofanov VY, Furstenau TN, Sanchez D, Hepp CM, Cocking J, Sobek C, Pagel N, Walker F, Chambers CL.

Ecol Evol. 2018 Apr 27;8(11):5563-5574. doi: 10.1002/ece3.4084. eCollection 2018 Jun.

5.

Range-wide genetic analysis of Dermacentor variabilis and its Francisella-like endosymbionts demonstrates phylogeographic concordance between both taxa.

Kaufman EL, Stone NE, Scoles GA, Hepp CM, Busch JD, Wagner DM.

Parasit Vectors. 2018 May 18;11(1):306. doi: 10.1186/s13071-018-2886-5.

6.

Contrasted patterns of evolution of the LINE-1 retrotransposon in perissodactyls: the history of a LINE-1 extinction.

Sookdeo A, Hepp CM, Boissinot S.

Mob DNA. 2018 Mar 28;9:12. doi: 10.1186/s13100-018-0117-4. eCollection 2018.

7.

Dating the Cryptococcus gattii Dispersal to the North American Pacific Northwest.

Roe CC, Bowers J, Oltean H, DeBess E, Dufresne PJ, McBurney S, Overy DP, Wanke B, Lysen C, Chiller T, Meyer W, Thompson GR 3rd, Lockhart SR, Hepp CM, Engelthaler DM.

mSphere. 2018 Jan 17;3(1). pii: e00499-17. doi: 10.1128/mSphere.00499-17. eCollection 2018 Jan-Feb.

8.

Temporal phylogeography of Yersinia pestis in Madagascar: Insights into the long-term maintenance of plague.

Vogler AJ, Andrianaivoarimanana V, Telfer S, Hall CM, Sahl JW, Hepp CM, Centner H, Andersen G, Birdsell DN, Rahalison L, Nottingham R, Keim P, Wagner DM, Rajerison M.

PLoS Negl Trop Dis. 2017 Sep 5;11(9):e0005887. doi: 10.1371/journal.pntd.0005887. eCollection 2017 Sep.

9.

NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats.

Sahl JW, Lemmer D, Travis J, Schupp JM, Gillece JD, Aziz M, Driebe EM, Drees KP, Hicks ND, Williamson CHD, Hepp CM, Smith DE, Roe C, Engelthaler DM, Wagner DM, Keim P.

Microb Genom. 2016 Aug 25;2(8):e000074. doi: 10.1099/mgen.0.000074. eCollection 2016 Aug.

10.

Phylogeny of the jacchus group of Callithrix marmosets based on complete mitochondrial genomes.

Malukiewicz J, Hepp CM, Guschanski K, Stone AC.

Am J Phys Anthropol. 2017 Jan;162(1):157-169. doi: 10.1002/ajpa.23105. Epub 2016 Oct 20.

PMID:
27762445
11.

Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever.

Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, Gade L, Waddell V, Komatsu K, Arathoon E, Logemann H, Thompson GR 3rd, Chiller T, Barker B, Keim P, Litvintseva AP.

MBio. 2016 Apr 26;7(2):e00550-16. doi: 10.1128/mBio.00550-16.

12.

Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus.

Driebe EM, Sahl JW, Roe C, Bowers JR, Schupp JM, Gillece JD, Kelley E, Price LB, Pearson TR, Hepp CM, Brzoska PM, Cummings CA, Furtado MR, Andersen PS, Stegger M, Engelthaler DM, Keim PS.

PLoS One. 2015 Jul 10;10(7):e0130955. doi: 10.1371/journal.pone.0130955. eCollection 2015.

13.

Genotyping of Burkholderia mallei from an outbreak of glanders in Bahrain suggests multiple introduction events.

Scholz HC, Pearson T, Hornstra H, Projahn M, Terzioglu R, Wernery R, Georgi E, Riehm JM, Wagner DM, Keim PS, Joseph M, Johnson B, Kinne J, Jose S, Hepp CM, Witte A, Wernery U.

PLoS Negl Trop Dis. 2014 Sep 25;8(9):e3195. doi: 10.1371/journal.pntd.0003195. eCollection 2014 Sep.

14.

Revisiting the evolution of mouse LINE-1 in the genomic era.

Sookdeo A, Hepp CM, McClure MA, Boissinot S.

Mob DNA. 2013 Jan 3;4(1):3. doi: 10.1186/1759-8753-4-3.

15.

Automated characterization of potentially active retroid agents in the human genome.

McClure MA, Richardson HS, Clinton RA, Hepp CM, Crowther BA, Donaldson EF.

Genomics. 2005 Apr;85(4):512-23.

PMID:
15780754

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