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Items: 1 to 50 of 268


Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species.

Guyeux C, Charr JC, Tran HTM, Furtado A, Henry RJ, Crouzillat D, Guyot R, Hamon P.

PLoS One. 2019 Jun 12;14(6):e0216347. doi: 10.1371/journal.pone.0216347. eCollection 2019.


Analysis of the diversity and tissue specificity of sucrose synthase genes in the long read transcriptome of sugarcane.

Thirugnanasambandam PP, Mason PJ, Hoang NV, Furtado A, Botha FC, Henry RJ.

BMC Plant Biol. 2019 Apr 25;19(1):160. doi: 10.1186/s12870-019-1733-y.


Advances in understanding salt tolerance in rice.

Ganie SA, Molla KA, Henry RJ, Bhat KV, Mondal TK.

Theor Appl Genet. 2019 Apr;132(4):851-870. doi: 10.1007/s00122-019-03301-8. Epub 2019 Feb 13. Review.


Origin and evolution of qingke barley in Tibet.

Zeng X, Guo Y, Xu Q, Mascher M, Guo G, Li S, Mao L, Liu Q, Xia Z, Zhou J, Yuan H, Tai S, Wang Y, Wei Z, Song L, Zha S, Li S, Tang Y, Bai L, Zhuang Z, He W, Zhao S, Fang X, Gao Q, Yin Y, Wang J, Yang H, Zhang J, Henry RJ, Stein N, Tashi N.

Nat Commun. 2018 Dec 21;9(1):5433. doi: 10.1038/s41467-018-07920-5.


Neutral Sphingomyelinase Inhibition Alleviates LPS-Induced Microglia Activation and Neuroinflammation after Experimental Traumatic Brain Injury.

Kumar A, Henry RJ, Stoica BA, Loane DJ, Abulwerdi G, Bhat SA, Faden AI.

J Pharmacol Exp Ther. 2019 Mar;368(3):338-352. doi: 10.1124/jpet.118.253955. Epub 2018 Dec 18.


Re-sequencing Resources to Improve Starch and Grain Quality in Rice.

Subbaiyan GK, Masouleh AK, Furtado A, Waters DLE, Henry RJ.

Methods Mol Biol. 2019;1892:201-240. doi: 10.1007/978-1-4939-8914-0_12.


Sex Differences in Acute Neuroinflammation after Experimental Traumatic Brain Injury Are Mediated by Infiltrating Myeloid Cells.

Doran SJ, Ritzel RM, Glaser EP, Henry RJ, Faden AI, Loane DJ.

J Neurotrauma. 2019 Apr 1;36(7):1040-1053. doi: 10.1089/neu.2018.6019. Epub 2018 Nov 16.


Inhibition of miR-155 Limits Neuroinflammation and Improves Functional Recovery After Experimental Traumatic Brain Injury in Mice.

Henry RJ, Doran SJ, Barrett JP, Meadows VE, Sabirzhanov B, Stoica BA, Loane DJ, Faden AI.

Neurotherapeutics. 2019 Jan;16(1):216-230. doi: 10.1007/s13311-018-0665-9.


Transcriptome analysis highlights key differentially expressed genes involved in cellulose and lignin biosynthesis of sugarcane genotypes varying in fiber content.

Kasirajan L, Hoang NV, Furtado A, Botha FC, Henry RJ.

Sci Rep. 2018 Aug 2;8(1):11612. doi: 10.1038/s41598-018-30033-4.


The coffee bean transcriptome explains the accumulation of the major bean components through ripening.

Cheng B, Furtado A, Henry RJ.

Sci Rep. 2018 Jul 30;8(1):11414. doi: 10.1038/s41598-018-29842-4.


The Challenge of Analyzing the Sugarcane Genome.

Thirugnanasambandam PP, Hoang NV, Henry RJ.

Front Plant Sci. 2018 May 14;9:616. doi: 10.3389/fpls.2018.00616. eCollection 2018. Review.


De novo assembly and characterizing of the culm-derived meta-transcriptome from the polyploid sugarcane genome based on coding transcripts.

Hoang NV, Furtado A, Thirugnanasambandam PP, Botha FC, Henry RJ.

Heliyon. 2018 Mar 22;4(3):e00583. doi: 10.1016/j.heliyon.2018.e00583. eCollection 2018 Mar.


Wheat seed transcriptome reveals genes controlling key traits for human preference and crop adaptation.

Henry RJ, Furtado A, Rangan P.

Curr Opin Plant Biol. 2018 Oct;45(Pt B):231-236. doi: 10.1016/j.pbi.2018.05.002. Epub 2018 May 17. Review.


Chloroplast phylogeography of AA genome rice species.

Moner AM, Furtado A, Henry RJ.

Mol Phylogenet Evol. 2018 Oct;127:475-487. doi: 10.1016/j.ympev.2018.05.002. Epub 2018 May 16.


Diversity and evolution of rice progenitors in Australia.

Moner AM, Furtado A, Chivers I, Fox G, Crayn D, Henry RJ.

Ecol Evol. 2018 Apr 2;8(8):4360-4366. doi: 10.1002/ece3.3989. eCollection 2018 Apr.


Role of genomics in promoting the utilization of plant genetic resources in genebanks.

Wambugu PW, Ndjiondjop MN, Henry RJ.

Brief Funct Genomics. 2018 May 1;17(3):198-206. doi: 10.1093/bfgp/ely014. Review.


Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus.

Butler JB, Freeman JS, Potts BM, Vaillancourt RE, Grattapaglia D, Silva-Junior OB, Simmons BA, Healey AL, Schmutz J, Barry KW, Lee DJ, Henry RJ, King GJ, Baten A, Shepherd M.

Heredity (Edinb). 2018 Jul;121(1):87-104. doi: 10.1038/s41437-018-0058-1. Epub 2018 Mar 10.


Use of a draft genome of coffee (Coffea arabica) to identify SNPs associated with caffeine content.

Tran HTM, Ramaraj T, Furtado A, Lee LS, Henry RJ.

Plant Biotechnol J. 2018 Oct;16(10):1756-1766. doi: 10.1111/pbi.12912. Epub 2018 Apr 13.


Chronic Alterations in Systemic Immune Function after Traumatic Brain Injury.

Ritzel RM, Doran SJ, Barrett JP, Henry RJ, Ma EL, Faden AI, Loane DJ.

J Neurotrauma. 2018 Jul 1;35(13):1419-1436. doi: 10.1089/neu.2017.5399. Epub 2018 May 3.


Evaluating the sensory properties of unpolished Australian wild rice.

Tikapunya T, Henry RJ, Smyth H.

Food Res Int. 2018 Jan;103:406-414. doi: 10.1016/j.foodres.2017.10.037. Epub 2017 Oct 21.


Transcriptome analysis of Brachypodium during fungal pathogen infection reveals both shared and distinct defense responses with wheat.

Powell JJ, Carere J, Sablok G, Fitzgerald TL, Stiller J, Colgrave ML, Gardiner DM, Manners JM, Vogel JP, Henry RJ, Kazan K.

Sci Rep. 2017 Dec 8;7(1):17212. doi: 10.1038/s41598-017-17454-3.


Association of variation in the sugarcane transcriptome with sugar content.

Thirugnanasambandam PP, Hoang NV, Furtado A, Botha FC, Henry RJ.

BMC Genomics. 2017 Nov 25;18(1):909. doi: 10.1186/s12864-017-4302-5.


Long-read sequencing of the coffee bean transcriptome reveals the diversity of full-length transcripts.

Cheng B, Furtado A, Henry RJ.

Gigascience. 2017 Nov 1;6(11):1-13. doi: 10.1093/gigascience/gix086.


A Highly Efficient and Reproducible Fusarium spp. Inoculation Method for Brachypodium distachyon.

Rana A, Karunakaran A, Fitzgerald TL, Sabburg R, Aitken EAB, Henry RJ, Powell JJ, Kazan K.

Methods Mol Biol. 2018;1667:43-55. doi: 10.1007/978-1-4939-7278-4_4.


Fasciclin-like arabinogalactan protein gene expression is associated with yield of flour in the milling of wheat.

Nirmal RC, Furtado A, Rangan P, Henry RJ.

Sci Rep. 2017 Oct 2;7(1):12539. doi: 10.1038/s41598-017-12845-y.


Effects of genotype and temperature on accumulation of plant secondary metabolites in Canadian and Australian wheat grown under controlled environments.

Shamloo M, Babawale EA, Furtado A, Henry RJ, Eck PK, Jones PJH.

Sci Rep. 2017 Aug 22;7(1):9133. doi: 10.1038/s41598-017-09681-5.


Association of gene expression with biomass content and composition in sugarcane.

Hoang NV, Furtado A, O'Keeffe AJ, Botha FC, Henry RJ.

PLoS One. 2017 Aug 17;12(8):e0183417. doi: 10.1371/journal.pone.0183417. eCollection 2017.


Does C4 Photosynthesis Occur in Wheat Seeds?

Henry RJ, Rangan P, Furtado A, Busch FA, Farquhar GD.

Plant Physiol. 2017 Aug;174(4):1992-1995. doi: 10.1104/pp.17.00837. No abstract available.


FAAH, but not MAGL, inhibition modulates acute TLR3-induced neuroimmune signaling in the rat, independent of sex.

Flannery LE, Henry RJ, Kerr DM, Finn DP, Roche M.

J Neurosci Res. 2018 Jun;96(6):989-1001. doi: 10.1002/jnr.24120. Epub 2017 Jul 20.


Molecular structures and properties of starches of Australian wild rice.

Tikapunya T, Zou W, Yu W, Powell PO, Fox GP, Furtado A, Henry RJ, Gilbert RG.

Carbohydr Polym. 2017 Sep 15;172:213-222. doi: 10.1016/j.carbpol.2017.05.046. Epub 2017 May 19.


A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing.

Hoang NV, Furtado A, Mason PJ, Marquardt A, Kasirajan L, Thirugnanasambandam PP, Botha FC, Henry RJ.

BMC Genomics. 2017 May 22;18(1):395. doi: 10.1186/s12864-017-3757-8.


NOX2 deficiency alters macrophage phenotype through an IL-10/STAT3 dependent mechanism: implications for traumatic brain injury.

Barrett JP, Henry RJ, Villapol S, Stoica BA, Kumar A, Burns MP, Faden AI, Loane DJ.

J Neuroinflammation. 2017 Mar 24;14(1):65. doi: 10.1186/s12974-017-0843-4.


Pharmacological inhibition of FAAH modulates TLR-induced neuroinflammation, but not sickness behaviour: An effect partially mediated by central TRPV1.

Henry RJ, Kerr DM, Flannery LE, Killilea M, Hughes EM, Corcoran L, Finn DP, Roche M.

Brain Behav Immun. 2017 May;62:318-331. doi: 10.1016/j.bbi.2017.02.016. Epub 2017 Feb 22.


The Fusarium crown rot pathogen Fusarium pseudograminearum triggers a suite of transcriptional and metabolic changes in bread wheat (Triticum aestivum L.).

Powell JJ, Carere J, Fitzgerald TL, Stiller J, Covarelli L, Xu Q, Gubler F, Colgrave ML, Gardiner DM, Manners JM, Henry RJ, Kazan K.

Ann Bot. 2017 Mar 1;119(5):853-867. doi: 10.1093/aob/mcw207.


Evaluation of Relationships between Growth Rate, Tree Size, Lignocellulose Composition, and Enzymatic Saccharification in Interspecific Corymbia Hybrids and Parental Taxa.

Healey AL, Lee DJ, Lupoi JS, Papa G, Guenther JM, Corno L, Adani F, Singh S, Simmons BA, Henry RJ.

Front Plant Sci. 2016 Nov 18;7:1705. eCollection 2016.


Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice.

Brozynska M, Copetti D, Furtado A, Wing RA, Crayn D, Fox G, Ishikawa R, Henry RJ.

Plant Biotechnol J. 2017 Jun;15(6):765-774. doi: 10.1111/pbi.12674. Epub 2017 Jan 23.


Genome and transcriptome sequencing characterises the gene space of Macadamia integrifolia (Proteaceae).

Nock CJ, Baten A, Barkla BJ, Furtado A, Henry RJ, King GJ.

BMC Genomics. 2016 Nov 17;17(1):937.


Commentary: New evidence for grain specific C4 photosynthesis in wheat.

Rangan P, Furtado A, Henry RJ.

Front Plant Sci. 2016 Oct 19;7:1537. eCollection 2016. No abstract available.


Influence of Gene Expression on Hardness in Wheat.

Nirmal RC, Furtado A, Wrigley C, Henry RJ.

PLoS One. 2016 Oct 14;11(10):e0164746. doi: 10.1371/journal.pone.0164746. eCollection 2016.


The defence-associated transcriptome of hexaploid wheat displays homoeolog expression and induction bias.

Powell JJ, Fitzgerald TL, Stiller J, Berkman PJ, Gardiner DM, Manners JM, Henry RJ, Kazan K.

Plant Biotechnol J. 2017 Apr;15(4):533-543. doi: 10.1111/pbi.12651. Epub 2016 Nov 11.


New evidence for grain specific C4 photosynthesis in wheat.

Rangan P, Furtado A, Henry RJ.

Sci Rep. 2016 Aug 17;6:31721. doi: 10.1038/srep31721.


Advances in genomics for the improvement of quality in coffee.

Tran HT, Lee LS, Furtado A, Smyth H, Henry RJ.

J Sci Food Agric. 2016 Aug;96(10):3300-12. doi: 10.1002/jsfa.7692. Epub 2016 Apr 5. Review.


Functional cereals for production in new and variable climates.

Henry RJ, Rangan P, Furtado A.

Curr Opin Plant Biol. 2016 Apr;30:11-8. doi: 10.1016/j.pbi.2015.12.008. Epub 2016 Jan 30. Review.


Efficient Eucalypt Cell Wall Deconstruction and Conversion for Sustainable Lignocellulosic Biofuels.

Healey AL, Lee DJ, Furtado A, Simmons BA, Henry RJ.

Front Bioeng Biotechnol. 2015 Nov 20;3:190. doi: 10.3389/fbioe.2015.00190. eCollection 2015. Review.


Potential for Genetic Improvement of Sugarcane as a Source of Biomass for Biofuels.

Hoang NV, Furtado A, Botha FC, Simmons BA, Henry RJ.

Front Bioeng Biotechnol. 2015 Nov 17;3:182. doi: 10.3389/fbioe.2015.00182. eCollection 2015. Review.


Relationships of wild and domesticated rices (Oryza AA genome species) based upon whole chloroplast genome sequences.

Wambugu PW, Brozynska M, Furtado A, Waters DL, Henry RJ.

Sci Rep. 2015 Sep 10;5:13957. doi: 10.1038/srep13957.


Genomics of crop wild relatives: expanding the gene pool for crop improvement.

Brozynska M, Furtado A, Henry RJ.

Plant Biotechnol J. 2016 Apr;14(4):1070-85. doi: 10.1111/pbi.12454. Epub 2015 Aug 26. Review.


Localization of polyhydroxybutyrate in sugarcane using Fourier-transform infrared microspectroscopy and multivariate imaging.

Lupoi JS, Smith-Moritz A, Singh S, McQualter R, Scheller HV, Simmons BA, Henry RJ.

Biotechnol Biofuels. 2015 Jul 10;8:98. doi: 10.1186/s13068-015-0279-y. eCollection 2015.


Sustainable Utilization of TCM Resources.

Chen S, Wang Y, Zhao Z, Leon CJ, Henry RJ.

Evid Based Complement Alternat Med. 2015;2015:613836. doi: 10.1155/2015/613836. Epub 2015 May 20. No abstract available.

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