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Structural elements that modulate the substrate specificity of plant purple acid phosphatases: Avenues for improved phosphorus acquisition in crops.

Feder D, McGeary RP, Mitić N, Lonhienne T, Furtado A, Schulz BL, Henry RJ, Schmidt S, Guddat LW, Schenk G.

Plant Sci. 2020 May;294:110445. doi: 10.1016/j.plantsci.2020.110445. Epub 2020 Feb 14.


Slower development of lower canopy beans produces better coffee.

Cheng B, Smyth HE, Furtado A, Henry RJ.

J Exp Bot. 2020 Mar 24. pii: eraa151. doi: 10.1093/jxb/eraa151. [Epub ahead of print]


Early or Late Bacterial Lung Infection Increases Mortality After Traumatic Brain Injury in Male Mice and Chronically Impairs Monocyte Innate Immune Function.

Doran SJ, Henry RJ, Shirey KA, Barrett JP, Ritzel RM, Lai W, Blanco JC, Faden AI, Vogel SN, Loane DJ.

Crit Care Med. 2020 Mar 5. doi: 10.1097/CCM.0000000000004273. [Epub ahead of print]


Microglial Depletion with CSF1R Inhibitor During Chronic Phase of Experimental Traumatic Brain Injury Reduces Neurodegeneration and Neurological Deficits.

Henry RJ, Ritzel RM, Barrett JP, Doran SJ, Jiao Y, Leach JB, Szeto GL, Wu J, Stoica BA, Faden AI, Loane DJ.

J Neurosci. 2020 Apr 1;40(14):2960-2974. doi: 10.1523/JNEUROSCI.2402-19.2020. Epub 2020 Feb 24.


Molecular and Morphological Divergence of Australian Wild Rice.

Lam DT, Ichitani K, Henry RJ, Ishikawa R.

Plants (Basel). 2020 Feb 10;9(2). pii: E224. doi: 10.3390/plants9020224.


Interferon-β Plays a Detrimental Role in Experimental Traumatic Brain Injury by Enhancing Neuroinflammation That Drives Chronic Neurodegeneration.

Barrett JP, Henry RJ, Shirey KA, Doran SJ, Makarevich OD, Ritzel RM, Meadows VA, Vogel SN, Faden AI, Stoica BA, Loane DJ.

J Neurosci. 2020 Mar 11;40(11):2357-2370. doi: 10.1523/JNEUROSCI.2516-19.2020. Epub 2020 Feb 6.


Enhanced Akt/GSK-3β/CREB signaling mediates the anti-inflammatory actions of mGluR5 positive allosteric modulators in microglia and following traumatic brain injury in male mice.

Bhat SA, Henry RJ, Blanchard AC, Stoica BA, Loane DJ, Faden AI.

J Neurochem. 2020 Jan 11:e14954. doi: 10.1111/jnc.14954. [Epub ahead of print]


Innovations in plant genetics adapting agriculture to climate change.

Henry RJ.

Curr Opin Plant Biol. 2019 Dec 10. pii: S1369-5266(19)30112-8. doi: 10.1016/j.pbi.2019.11.004. [Epub ahead of print] Review.


Comparative Transcriptome Profiling of Resistant and Susceptible Sugarcane Cultivars in Response to Infection by Xanthomonas albilineans.

Ntambo MS, Meng JY, Rott PC, Henry RJ, Zhang HL, Gao SJ.

Int J Mol Sci. 2019 Dec 5;20(24). pii: E6138. doi: 10.3390/ijms20246138.


Australian Wild Rice Populations: A Key Resource for Global Food Security.

Henry RJ.

Front Plant Sci. 2019 Oct 22;10:1354. doi: 10.3389/fpls.2019.01354. eCollection 2019. Review.


Target prediction of candidate miRNAs from Oryza sativa for silencing the RYMV genome.

Jabbar B, Iqbal MS, Batcho AA, Nasir IA, Rashid B, Husnain T, Henry RJ.

Comput Biol Chem. 2019 Dec;83:107127. doi: 10.1016/j.compbiolchem.2019.107127. Epub 2019 Sep 13.


Cereal Genomics Databases and Plant Genetic Resources in Crop Improvement.

Henry RJ.

Methods Mol Biol. 2020;2072:9-14. doi: 10.1007/978-1-4939-9865-4_2.


Endocannabinoid modulation of inflammatory hyperalgesia in the IFN-α mouse model of depression.

Fitzgibbon M, Kerr DM, Henry RJ, Finn DP, Roche M.

Brain Behav Immun. 2019 Nov;82:372-381. doi: 10.1016/j.bbi.2019.09.006. Epub 2019 Sep 7.


The Impact of cDNA Normalization on Long-Read Sequencing of a Complex Transcriptome.

Hoang NV, Furtado A, Perlo V, Botha FC, Henry RJ.

Front Genet. 2019 Jul 23;10:654. doi: 10.3389/fgene.2019.00654. eCollection 2019.


Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species.

Guyeux C, Charr JC, Tran HTM, Furtado A, Henry RJ, Crouzillat D, Guyot R, Hamon P.

PLoS One. 2019 Jun 12;14(6):e0216347. doi: 10.1371/journal.pone.0216347. eCollection 2019.


Analysis of the diversity and tissue specificity of sucrose synthase genes in the long read transcriptome of sugarcane.

Thirugnanasambandam PP, Mason PJ, Hoang NV, Furtado A, Botha FC, Henry RJ.

BMC Plant Biol. 2019 Apr 25;19(1):160. doi: 10.1186/s12870-019-1733-y.


Advances in understanding salt tolerance in rice.

Ganie SA, Molla KA, Henry RJ, Bhat KV, Mondal TK.

Theor Appl Genet. 2019 Apr;132(4):851-870. doi: 10.1007/s00122-019-03301-8. Epub 2019 Feb 13. Review.


Origin and evolution of qingke barley in Tibet.

Zeng X, Guo Y, Xu Q, Mascher M, Guo G, Li S, Mao L, Liu Q, Xia Z, Zhou J, Yuan H, Tai S, Wang Y, Wei Z, Song L, Zha S, Li S, Tang Y, Bai L, Zhuang Z, He W, Zhao S, Fang X, Gao Q, Yin Y, Wang J, Yang H, Zhang J, Henry RJ, Stein N, Tashi N.

Nat Commun. 2018 Dec 21;9(1):5433. doi: 10.1038/s41467-018-07920-5.


Neutral Sphingomyelinase Inhibition Alleviates LPS-Induced Microglia Activation and Neuroinflammation after Experimental Traumatic Brain Injury.

Kumar A, Henry RJ, Stoica BA, Loane DJ, Abulwerdi G, Bhat SA, Faden AI.

J Pharmacol Exp Ther. 2019 Mar;368(3):338-352. doi: 10.1124/jpet.118.253955. Epub 2018 Dec 18.


Re-sequencing Resources to Improve Starch and Grain Quality in Rice.

Subbaiyan GK, Masouleh AK, Furtado A, Waters DLE, Henry RJ.

Methods Mol Biol. 2019;1892:201-240. doi: 10.1007/978-1-4939-8914-0_12.


Sex Differences in Acute Neuroinflammation after Experimental Traumatic Brain Injury Are Mediated by Infiltrating Myeloid Cells.

Doran SJ, Ritzel RM, Glaser EP, Henry RJ, Faden AI, Loane DJ.

J Neurotrauma. 2019 Apr 1;36(7):1040-1053. doi: 10.1089/neu.2018.6019. Epub 2018 Nov 16.


Inhibition of miR-155 Limits Neuroinflammation and Improves Functional Recovery After Experimental Traumatic Brain Injury in Mice.

Henry RJ, Doran SJ, Barrett JP, Meadows VE, Sabirzhanov B, Stoica BA, Loane DJ, Faden AI.

Neurotherapeutics. 2019 Jan;16(1):216-230. doi: 10.1007/s13311-018-0665-9.


Transcriptome analysis highlights key differentially expressed genes involved in cellulose and lignin biosynthesis of sugarcane genotypes varying in fiber content.

Kasirajan L, Hoang NV, Furtado A, Botha FC, Henry RJ.

Sci Rep. 2018 Aug 2;8(1):11612. doi: 10.1038/s41598-018-30033-4.


The coffee bean transcriptome explains the accumulation of the major bean components through ripening.

Cheng B, Furtado A, Henry RJ.

Sci Rep. 2018 Jul 30;8(1):11414. doi: 10.1038/s41598-018-29842-4.


The Challenge of Analyzing the Sugarcane Genome.

Thirugnanasambandam PP, Hoang NV, Henry RJ.

Front Plant Sci. 2018 May 14;9:616. doi: 10.3389/fpls.2018.00616. eCollection 2018. Review.


De novo assembly and characterizing of the culm-derived meta-transcriptome from the polyploid sugarcane genome based on coding transcripts.

Hoang NV, Furtado A, Thirugnanasambandam PP, Botha FC, Henry RJ.

Heliyon. 2018 Mar 22;4(3):e00583. doi: 10.1016/j.heliyon.2018.e00583. eCollection 2018 Mar.


Wheat seed transcriptome reveals genes controlling key traits for human preference and crop adaptation.

Henry RJ, Furtado A, Rangan P.

Curr Opin Plant Biol. 2018 Oct;45(Pt B):231-236. doi: 10.1016/j.pbi.2018.05.002. Epub 2018 May 17. Review.


Chloroplast phylogeography of AA genome rice species.

Moner AM, Furtado A, Henry RJ.

Mol Phylogenet Evol. 2018 Oct;127:475-487. doi: 10.1016/j.ympev.2018.05.002. Epub 2018 May 16.


Diversity and evolution of rice progenitors in Australia.

Moner AM, Furtado A, Chivers I, Fox G, Crayn D, Henry RJ.

Ecol Evol. 2018 Apr 2;8(8):4360-4366. doi: 10.1002/ece3.3989. eCollection 2018 Apr.


Role of genomics in promoting the utilization of plant genetic resources in genebanks.

Wambugu PW, Ndjiondjop MN, Henry RJ.

Brief Funct Genomics. 2018 May 1;17(3):198-206. doi: 10.1093/bfgp/ely014. Review.


Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus.

Butler JB, Freeman JS, Potts BM, Vaillancourt RE, Grattapaglia D, Silva-Junior OB, Simmons BA, Healey AL, Schmutz J, Barry KW, Lee DJ, Henry RJ, King GJ, Baten A, Shepherd M.

Heredity (Edinb). 2018 Jul;121(1):87-104. doi: 10.1038/s41437-018-0058-1. Epub 2018 Mar 10.


Use of a draft genome of coffee (Coffea arabica) to identify SNPs associated with caffeine content.

Tran HTM, Ramaraj T, Furtado A, Lee LS, Henry RJ.

Plant Biotechnol J. 2018 Oct;16(10):1756-1766. doi: 10.1111/pbi.12912. Epub 2018 Apr 13.


Chronic Alterations in Systemic Immune Function after Traumatic Brain Injury.

Ritzel RM, Doran SJ, Barrett JP, Henry RJ, Ma EL, Faden AI, Loane DJ.

J Neurotrauma. 2018 Jul 1;35(13):1419-1436. doi: 10.1089/neu.2017.5399. Epub 2018 May 3.


Evaluating the sensory properties of unpolished Australian wild rice.

Tikapunya T, Henry RJ, Smyth H.

Food Res Int. 2018 Jan;103:406-414. doi: 10.1016/j.foodres.2017.10.037. Epub 2017 Oct 21.


Transcriptome analysis of Brachypodium during fungal pathogen infection reveals both shared and distinct defense responses with wheat.

Powell JJ, Carere J, Sablok G, Fitzgerald TL, Stiller J, Colgrave ML, Gardiner DM, Manners JM, Vogel JP, Henry RJ, Kazan K.

Sci Rep. 2017 Dec 8;7(1):17212. doi: 10.1038/s41598-017-17454-3.


Association of variation in the sugarcane transcriptome with sugar content.

Thirugnanasambandam PP, Hoang NV, Furtado A, Botha FC, Henry RJ.

BMC Genomics. 2017 Nov 25;18(1):909. doi: 10.1186/s12864-017-4302-5.


Long-read sequencing of the coffee bean transcriptome reveals the diversity of full-length transcripts.

Cheng B, Furtado A, Henry RJ.

Gigascience. 2017 Nov 1;6(11):1-13. doi: 10.1093/gigascience/gix086.


A Highly Efficient and Reproducible Fusarium spp. Inoculation Method for Brachypodium distachyon.

Rana A, Karunakaran A, Fitzgerald TL, Sabburg R, Aitken EAB, Henry RJ, Powell JJ, Kazan K.

Methods Mol Biol. 2018;1667:43-55. doi: 10.1007/978-1-4939-7278-4_4.


Fasciclin-like arabinogalactan protein gene expression is associated with yield of flour in the milling of wheat.

Nirmal RC, Furtado A, Rangan P, Henry RJ.

Sci Rep. 2017 Oct 2;7(1):12539. doi: 10.1038/s41598-017-12845-y.


Effects of genotype and temperature on accumulation of plant secondary metabolites in Canadian and Australian wheat grown under controlled environments.

Shamloo M, Babawale EA, Furtado A, Henry RJ, Eck PK, Jones PJH.

Sci Rep. 2017 Aug 22;7(1):9133. doi: 10.1038/s41598-017-09681-5.


Association of gene expression with biomass content and composition in sugarcane.

Hoang NV, Furtado A, O'Keeffe AJ, Botha FC, Henry RJ.

PLoS One. 2017 Aug 17;12(8):e0183417. doi: 10.1371/journal.pone.0183417. eCollection 2017.


Does C4 Photosynthesis Occur in Wheat Seeds?

Henry RJ, Rangan P, Furtado A, Busch FA, Farquhar GD.

Plant Physiol. 2017 Aug;174(4):1992-1995. doi: 10.1104/pp.17.00837. No abstract available.


FAAH, but not MAGL, inhibition modulates acute TLR3-induced neuroimmune signaling in the rat, independent of sex.

Flannery LE, Henry RJ, Kerr DM, Finn DP, Roche M.

J Neurosci Res. 2018 Jun;96(6):989-1001. doi: 10.1002/jnr.24120. Epub 2017 Jul 20.


Molecular structures and properties of starches of Australian wild rice.

Tikapunya T, Zou W, Yu W, Powell PO, Fox GP, Furtado A, Henry RJ, Gilbert RG.

Carbohydr Polym. 2017 Sep 15;172:213-222. doi: 10.1016/j.carbpol.2017.05.046. Epub 2017 May 19.


A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing.

Hoang NV, Furtado A, Mason PJ, Marquardt A, Kasirajan L, Thirugnanasambandam PP, Botha FC, Henry RJ.

BMC Genomics. 2017 May 22;18(1):395. doi: 10.1186/s12864-017-3757-8.


NOX2 deficiency alters macrophage phenotype through an IL-10/STAT3 dependent mechanism: implications for traumatic brain injury.

Barrett JP, Henry RJ, Villapol S, Stoica BA, Kumar A, Burns MP, Faden AI, Loane DJ.

J Neuroinflammation. 2017 Mar 24;14(1):65. doi: 10.1186/s12974-017-0843-4.


Pharmacological inhibition of FAAH modulates TLR-induced neuroinflammation, but not sickness behaviour: An effect partially mediated by central TRPV1.

Henry RJ, Kerr DM, Flannery LE, Killilea M, Hughes EM, Corcoran L, Finn DP, Roche M.

Brain Behav Immun. 2017 May;62:318-331. doi: 10.1016/j.bbi.2017.02.016. Epub 2017 Feb 22.


The Fusarium crown rot pathogen Fusarium pseudograminearum triggers a suite of transcriptional and metabolic changes in bread wheat (Triticum aestivum L.).

Powell JJ, Carere J, Fitzgerald TL, Stiller J, Covarelli L, Xu Q, Gubler F, Colgrave ML, Gardiner DM, Manners JM, Henry RJ, Kazan K.

Ann Bot. 2017 Mar 1;119(5):853-867. doi: 10.1093/aob/mcw207.


Evaluation of Relationships between Growth Rate, Tree Size, Lignocellulose Composition, and Enzymatic Saccharification in Interspecific Corymbia Hybrids and Parental Taxa.

Healey AL, Lee DJ, Lupoi JS, Papa G, Guenther JM, Corno L, Adani F, Singh S, Simmons BA, Henry RJ.

Front Plant Sci. 2016 Nov 18;7:1705. eCollection 2016.

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