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Items: 32


The persimmon genome reveals clues to the evolution of a lineage-specific sex determination system in plants.

Akagi T, Shirasawa K, Nagasaki H, Hirakawa H, Tao R, Comai L, Henry IM.

PLoS Genet. 2020 Feb 18;16(2):e1008566. doi: 10.1371/journal.pgen.1008566. [Epub ahead of print]


Genomic Outcomes of Haploid Induction Crosses in Potato (Solanum tuberosum L.).

Amundson KR, OrdoƱez B, Santayana M, Tan EH, Henry IM, Mihovilovich E, Bonierbale M, Comai L.

Genetics. 2020 Feb;214(2):369-380. doi: 10.1534/genetics.119.302843. Epub 2019 Dec 23.


Two Y-chromosome-encoded genes determine sex in kiwifruit.

Akagi T, Pilkington SM, Varkonyi-Gasic E, Henry IM, Sugano SS, Sonoda M, Firl A, McNeilage MA, Douglas MJ, Wang T, Rebstock R, Voogd C, Datson P, Allan AC, Beppu K, Kataoka I, Tao R.

Nat Plants. 2019 Aug;5(8):801-809. doi: 10.1038/s41477-019-0489-6. Epub 2019 Aug 5.


One Hundred Ways to Invent the Sexes: Theoretical and Observed Paths to Dioecy in Plants.

Henry IM, Akagi T, Tao R, Comai L.

Annu Rev Plant Biol. 2018 Apr 29;69:553-575. doi: 10.1146/annurev-arplant-042817-040615. Review.


A Y-Encoded Suppressor of Feminization Arose via Lineage-Specific Duplication of a Cytokinin Response Regulator in Kiwifruit.

Akagi T, Henry IM, Ohtani H, Morimoto T, Beppu K, Kataoka I, Tao R.

Plant Cell. 2018 Apr;30(4):780-795. doi: 10.1105/tpc.17.00787. Epub 2018 Apr 6.


Detection of Chromothripsis in Plants.

Henry IM, Comai L, Tan EH.

Methods Mol Biol. 2018;1769:119-132. doi: 10.1007/978-1-4939-7780-2_8.


Epigenetic Regulation of the Sex Determination Gene MeGI in Polyploid Persimmon.

Akagi T, Henry IM, Kawai T, Comai L, Tao R.

Plant Cell. 2016 Dec;28(12):2905-2915. doi: 10.1105/tpc.16.00532. Epub 2016 Dec 12.


Significant enhancement of fatty acid composition in seeds of the allohexaploid, Camelina sativa, using CRISPR/Cas9 gene editing.

Jiang WZ, Henry IM, Lynagh PG, Comai L, Cahoon EB, Weeks DP.

Plant Biotechnol J. 2017 May;15(5):648-657. doi: 10.1111/pbi.12663. Epub 2017 Jan 12.


Rapid identification of lettuce seed germination mutants by bulked segregant analysis and whole genome sequencing.

Huo H, Henry IM, Coppoolse ER, Verhoef-Post M, Schut JW, de Rooij H, Vogelaar A, Joosen RV, Woudenberg L, Comai L, Bradford KJ.

Plant J. 2016 Nov;88(3):345-360. doi: 10.1111/tpj.13267. Epub 2016 Sep 15.


Insights into the Prunus-Specific S-RNase-Based Self-Incompatibility System from a Genome-Wide Analysis of the Evolutionary Radiation of S Locus-Related F-box Genes.

Akagi T, Henry IM, Morimoto T, Tao R.

Plant Cell Physiol. 2016 Jun;57(6):1281-94. doi: 10.1093/pcp/pcw077. Epub 2016 Apr 14.


Creation and Genomic Analysis of Irradiation Hybrids in Populus.

Zinkgraf M, Haiby K, Lieberman MC, Comai L, Henry IM, Groover A.

Curr Protoc Plant Biol. 2016 Mar;1(2):431-450. doi: 10.1002/cppb.20025.


High-Throughput Analysis of T-DNA Location and Structure Using Sequence Capture.

Inagaki S, Henry IM, Lieberman MC, Comai L.

PLoS One. 2015 Oct 7;10(10):e0139672. doi: 10.1371/journal.pone.0139672. eCollection 2015.


A System for Dosage-Based Functional Genomics in Poplar.

Henry IM, Zinkgraf MS, Groover AT, Comai L.

Plant Cell. 2015 Sep;27(9):2370-83. doi: 10.1105/tpc.15.00349. Epub 2015 Aug 28.


Catastrophic chromosomal restructuring during genome elimination in plants.

Tan EH, Henry IM, Ravi M, Bradnam KR, Mandakova T, Marimuthu MP, Korf I, Lysak MA, Comai L, Chan SW.

Elife. 2015 May 15;4. pii: e06516. doi: 10.7554/eLife.06516.


A genome-wide analysis of Cas9 binding specificity using ChIP-seq and targeted sequence capture.

O'Geen H, Henry IM, Bhakta MS, Meckler JF, Segal DJ.

Nucleic Acids Res. 2015 Mar 31;43(6):3389-404. doi: 10.1093/nar/gkv137. Epub 2015 Feb 20.


Plant genetics. A Y-chromosome-encoded small RNA acts as a sex determinant in persimmons.

Akagi T, Henry IM, Tao R, Comai L.

Science. 2014 Oct 31;346(6209):646-50. doi: 10.1126/science.1257225. Epub 2014 Oct 30.


A haploid genetics toolbox for Arabidopsis thaliana.

Ravi M, Marimuthu MP, Tan EH, Maheshwari S, Henry IM, Marin-Rodriguez B, Urtecho G, Tan J, Thornhill K, Zhu F, Panoli A, Sundaresan V, Britt AB, Comai L, Chan SW.

Nat Commun. 2014 Oct 31;5:5334. doi: 10.1038/ncomms6334.


Assessment of RNAi-induced silencing in banana (Musa spp.).

Dang TV, Windelinckx S, Henry IM, De Coninck B, Cammue BP, Swennen R, Remy S.

BMC Res Notes. 2014 Sep 18;7:655. doi: 10.1186/1756-0500-7-655.


Efficient Genome-Wide Detection and Cataloging of EMS-Induced Mutations Using Exome Capture and Next-Generation Sequencing.

Henry IM, Nagalakshmi U, Lieberman MC, Ngo KJ, Krasileva KV, Vasquez-Gross H, Akhunova A, Akhunov E, Dubcovsky J, Tai TH, Comai L.

Plant Cell. 2014 Apr;26(4):1382-1397. Epub 2014 Apr 11.


The BOY NAMED SUE quantitative trait locus confers increased meiotic stability to an adapted natural allopolyploid of Arabidopsis.

Henry IM, Dilkes BP, Tyagi A, Gao J, Christensen B, Comai L.

Plant Cell. 2014 Jan;26(1):181-94. doi: 10.1105/tpc.113.120626. Epub 2014 Jan 24.


Highly active zinc-finger nucleases by extended modular assembly.

Bhakta MS, Henry IM, Ousterout DG, Das KT, Lockwood SH, Meckler JF, Wallen MC, Zykovich A, Yu Y, Leo H, Xu L, Gersbach CA, Segal DJ.

Genome Res. 2013 Mar;23(3):530-8. doi: 10.1101/gr.143693.112. Epub 2012 Dec 5.


Rapid creation of Arabidopsis doubled haploid lines for quantitative trait locus mapping.

Seymour DK, Filiault DL, Henry IM, Monson-Miller J, Ravi M, Pang A, Comai L, Chan SW, Maloof JN.

Proc Natl Acad Sci U S A. 2012 Mar 13;109(11):4227-32. doi: 10.1073/pnas.1117277109. Epub 2012 Feb 27.


Reference genome-independent assessment of mutation density using restriction enzyme-phased sequencing.

Monson-Miller J, Sanchez-Mendez DC, Fass J, Henry IM, Tai TH, Comai L.

BMC Genomics. 2012 Feb 14;13:72. doi: 10.1186/1471-2164-13-72.


Structure and regulation of the Asr gene family in banana.

Henry IM, Carpentier SC, Pampurova S, Van Hoylandt A, Panis B, Swennen R, Remy S.

Planta. 2011 Oct;234(4):785-98. doi: 10.1007/s00425-011-1421-0. Epub 2011 Jun 1.


Phenotypic consequences of aneuploidy in Arabidopsis thaliana.

Henry IM, Dilkes BP, Miller ES, Burkart-Waco D, Comai L.

Genetics. 2010 Dec;186(4):1231-45. doi: 10.1534/genetics.110.121079. Epub 2010 Sep 27.


Differential sensitivity of the Arabidopsis thaliana transcriptome and enhancers to the effects of genome doubling.

Pignatta D, Dilkes BP, Yoo SY, Henry IM, Madlung A, Doerge RW, Jeffrey Chen Z, Comai L.

New Phytol. 2010 Apr;186(1):194-206. doi: 10.1111/j.1469-8137.2010.03198.x.


Dosage and parent-of-origin effects shaping aneuploid swarms in A. thaliana.

Henry IM, Dilkes BP, Tyagi AP, Lin HY, Comai L.

Heredity (Edinb). 2009 Dec;103(6):458-68. doi: 10.1038/hdy.2009.81. Epub 2009 Jul 15.


Genetic basis for dosage sensitivity in Arabidopsis thaliana.

Henry IM, Dilkes BP, Comai L.

PLoS Genet. 2007 Apr 27;3(4):e70. Epub 2007 Mar 19.


Aneuploidy and genetic variation in the Arabidopsis thaliana triploid response.

Henry IM, Dilkes BP, Young K, Watson B, Wu H, Comai L.

Genetics. 2005 Aug;170(4):1979-88. Epub 2005 Jun 8.


Comparison of ESTs from juvenile and adult phases of the giant unicellular green alga Acetabularia acetabulum.

Henry IM, Wilkinson MD, Hernandez JM, Schwarz-Sommer Z, Grotewold E, Mandoli DF.

BMC Plant Biol. 2004 Mar 12;4:3.


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