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Items: 1 to 50 of 488

1.

Fungal ecological strategies reflected in gene transcription - a case study of two litter decomposers.

Barbi F, Kohler A, Barry K, Baskaran P, Daum C, Fauchery L, Ihrmark K, Kuo A, LaButti K, Lipzen A, Morin E, Grigoriev IV, Henrissat B, Lindahl B, Martin F.

Environ Microbiol. 2019 Nov 24. doi: 10.1111/1462-2920.14873. [Epub ahead of print]

PMID:
31760680
2.

Inverting family GH156 sialidases define an unusual catalytic motif for glycosidase action.

Bule P, Chuzel L, Blagova E, Wu L, Gray MA, Henrissat B, Rapp E, Bertozzi CR, Taron CH, Davies GJ.

Nat Commun. 2019 Oct 23;10(1):4816. doi: 10.1038/s41467-019-12684-7.

3.

At the nexus of three kingdoms: the genome of the mycorrhizal fungus Gigaspora margarita provides insights into plant, endobacterial and fungal interactions.

Venice F, Ghignone S, Salvioli di Fossalunga A, Amselem J, Novero M, Xianan X, Sędzielewska Toro K, Morin E, Lipzen A, Grigoriev IV, Henrissat B, Martin FM, Bonfante P.

Environ Microbiol. 2019 Oct 16. doi: 10.1111/1462-2920.14827. [Epub ahead of print]

PMID:
31621176
4.

Trichoderma reesei Dehydrogenase, a Pyrroloquinoline Quinone-Dependent Member of Auxiliary Activity Family 12 of the Carbohydrate-Active Enzymes Database: Functional and Structural Characterization.

Turbe-Doan A, Record E, Lombard V, Kumar R, Levasseur A, Henrissat B, Garron ML.

Appl Environ Microbiol. 2019 Nov 27;85(24). pii: e00964-19. doi: 10.1128/AEM.00964-19. Print 2019 Dec 15.

5.

Comparative genomic analyses reveal diverse virulence factors and antimicrobial resistance mechanisms in clinical Elizabethkingia meningoseptica strains.

Chen S, Soehnlen M, Blom J, Terrapon N, Henrissat B, Walker ED.

PLoS One. 2019 Oct 10;14(10):e0222648. doi: 10.1371/journal.pone.0222648. eCollection 2019.

6.

Discovery of hyperstable carbohydrate-active enzymes through metagenomics of extreme environments.

Strazzulli A, Cobucci-Ponzano B, Iacono R, Giglio R, Maurelli L, Curci N, Schiano-di-Cola C, Santangelo A, Contursi P, Lombard V, Henrissat B, Lauro FM, Fontes CMGA, Moracci M.

FEBS J. 2019 Oct 8. doi: 10.1111/febs.15080. [Epub ahead of print]

PMID:
31595646
7.

The continuing expansion of CAZymes and their families.

Garron ML, Henrissat B.

Curr Opin Chem Biol. 2019 Sep 20;53:82-87. doi: 10.1016/j.cbpa.2019.08.004. [Epub ahead of print] Review.

PMID:
31550558
8.

The Cellulosome Paradigm in An Extreme Alkaline Environment.

Phitsuwan P, Moraïs S, Dassa B, Henrissat B, Bayer EA.

Microorganisms. 2019 Sep 12;7(9). pii: E347. doi: 10.3390/microorganisms7090347.

9.

Author Correction: A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation.

Cartmell A, Muñoz-Muñoz J, Briggs JA, Ndeh DA, Lowe EC, Baslé A, Terrapon N, Stott K, Heunis T, Gray J, Yu L, Dupree P, Fernandes PZ, Shah S, Williams SJ, Labourel A, Trost M, Henrissat B, Gilbert HJ.

Nat Microbiol. 2019 Nov;4(11):2021-2023. doi: 10.1038/s41564-019-0584-5.

PMID:
31541200
10.

Interspecies Competition Impacts Targeted Manipulation of Human Gut Bacteria by Fiber-Derived Glycans.

Patnode ML, Beller ZW, Han ND, Cheng J, Peters SL, Terrapon N, Henrissat B, Le Gall S, Saulnier L, Hayashi DK, Meynier A, Vinoy S, Giannone RJ, Hettich RL, Gordon JI.

Cell. 2019 Sep 19;179(1):59-73.e13. doi: 10.1016/j.cell.2019.08.011.

PMID:
31539500
11.

A subfamily roadmap of the evolutionarily diverse glycoside hydrolase family 16 (GH16).

Viborg AH, Terrapon N, Lombard V, Michel G, Czjzek M, Henrissat B, Brumer H.

J Biol Chem. 2019 Nov 1;294(44):15973-15986. doi: 10.1074/jbc.RA119.010619. Epub 2019 Sep 9.

12.

Comprehensive genomic and transcriptomic analysis of polycyclic aromatic hydrocarbon degradation by a mycoremediation fungus, Dentipellis sp. KUC8613.

Park H, Min B, Jang Y, Kim J, Lipzen A, Sharma A, Andreopoulos B, Johnson J, Riley R, Spatafora JW, Henrissat B, Kim KH, Grigoriev IV, Kim JJ, Choi IG.

Appl Microbiol Biotechnol. 2019 Oct;103(19):8145-8155. doi: 10.1007/s00253-019-10089-6. Epub 2019 Sep 3.

PMID:
31482283
13.

Insights into an unusual Auxiliary Activity 9 family member lacking the histidine brace motif of lytic polysaccharide monooxygenases.

Frandsen KEH, Tovborg M, Jørgensen CI, Spodsberg N, Rosso MN, Hemsworth GR, Garman EF, Grime GW, Poulsen JN, Batth TS, Miyauchi S, Lipzen A, Daum C, Grigoriev IV, Johansen KS, Henrissat B, Berrin JG, Lo Leggio L.

J Biol Chem. 2019 Nov 8;294(45):17117-17130. doi: 10.1074/jbc.RA119.009223. Epub 2019 Aug 30.

14.

Substrate specificity, regiospecificity, and processivity in glycoside hydrolase family 74.

Arnal G, Stogios PJ, Asohan J, Attia MA, Skarina T, Viborg AH, Henrissat B, Savchenko A, Brumer H.

J Biol Chem. 2019 Sep 6;294(36):13233-13247. doi: 10.1074/jbc.RA119.009861. Epub 2019 Jul 19.

15.

Intrinsic dynamic behavior of enzyme:substrate complexes govern the catalytic action of β-galactosidases across clan GH-A.

Kumar R, Henrissat B, Coutinho PM.

Sci Rep. 2019 Jul 17;9(1):10346. doi: 10.1038/s41598-019-46589-8.

16.

Multi-omic analyses of exogenous nutrient bag decomposition by the black morel Morchella importuna reveal sustained carbon acquisition and transferring.

Tan H, Kohler A, Miao R, Liu T, Zhang Q, Zhang B, Jiang L, Wang Y, Xie L, Tang J, Li X, Liu L, Grigoriev IV, Daum C, LaButti K, Lipzen A, Kuo A, Morin E, Drula E, Henrissat B, Wang B, Huang Z, Gan B, Peng W, Martin FM.

Environ Microbiol. 2019 Oct;21(10):3909-3926. doi: 10.1111/1462-2920.14741. Epub 2019 Aug 6.

PMID:
31314937
17.

Effects of microbiota-directed foods in gnotobiotic animals and undernourished children.

Gehrig JL, Venkatesh S, Chang HW, Hibberd MC, Kung VL, Cheng J, Chen RY, Subramanian S, Cowardin CA, Meier MF, O'Donnell D, Talcott M, Spears LD, Semenkovich CF, Henrissat B, Giannone RJ, Hettich RL, Ilkayeva O, Muehlbauer M, Newgard CB, Sawyer C, Head RD, Rodionov DA, Arzamasov AA, Leyn SA, Osterman AL, Hossain MI, Islam M, Choudhury N, Sarker SA, Huq S, Mahmud I, Mostafa I, Mahfuz M, Barratt MJ, Ahmed T, Gordon JI.

Science. 2019 Jul 12;365(6449). pii: eaau4732. doi: 10.1126/science.aau4732.

18.

Investigating Host Microbiota Relationships Through Functional Metagenomics.

Laville E, Perrier J, Bejar N, Maresca M, Esque J, Tauzin AS, Bouhajja E, Leclerc M, Drula E, Henrissat B, Berdah S, Di Pasquale E, Robe P, Potocki-Veronese G.

Front Microbiol. 2019 Jun 7;10:1286. doi: 10.3389/fmicb.2019.01286. eCollection 2019.

19.

Comparative genomics reveals unique wood-decay strategies and fruiting body development in the Schizophyllaceae.

Almási É, Sahu N, Krizsán K, Bálint B, Kovács GM, Kiss B, Cseklye J, Drula E, Henrissat B, Nagy I, Chovatia M, Adam C, LaButti K, Lipzen A, Riley R, Grigoriev IV, Nagy LG.

New Phytol. 2019 Oct;224(2):902-915. doi: 10.1111/nph.16032. Epub 2019 Aug 1.

PMID:
31257601
20.

Evolution and comparative genomics of the most common Trichoderma species.

Kubicek CP, Steindorff AS, Chenthamara K, Manganiello G, Henrissat B, Zhang J, Cai F, Kopchinskiy AG, Kubicek EM, Kuo A, Baroncelli R, Sarrocco S, Noronha EF, Vannacci G, Shen Q, Grigoriev IV, Druzhinina IS.

BMC Genomics. 2019 Jun 12;20(1):485. doi: 10.1186/s12864-019-5680-7.

21.

Poplar carbohydrate-active enzymes: whole-genome annotation and functional analyses based on RNA expression data.

Kumar V, Hainaut M, Delhomme N, Mannapperuma C, Immerzeel P, Street NR, Henrissat B, Mellerowicz EJ.

Plant J. 2019 Aug;99(4):589-609. doi: 10.1111/tpj.14417. Epub 2019 Jul 1.

22.

Bacteroidetes use thousands of enzyme combinations to break down glycans.

Lapébie P, Lombard V, Drula E, Terrapon N, Henrissat B.

Nat Commun. 2019 May 3;10(1):2043. doi: 10.1038/s41467-019-10068-5.

23.

AA16, a new lytic polysaccharide monooxygenase family identified in fungal secretomes.

Filiatrault-Chastel C, Navarro D, Haon M, Grisel S, Herpoël-Gimbert I, Chevret D, Fanuel M, Henrissat B, Heiss-Blanquet S, Margeot A, Berrin JG.

Biotechnol Biofuels. 2019 Mar 16;12:55. doi: 10.1186/s13068-019-1394-y. eCollection 2019.

24.

Sucrose 6F-phosphate phosphorylase: a novel insight in the human gut microbiome.

Tauzin AS, Bruel L, Laville E, Nicoletti C, Navarro D, Henrissat B, Perrier J, Potocki-Veronese G, Giardina T, Lafond M.

Microb Genom. 2019 Apr;5(4). doi: 10.1099/mgen.0.000253. Epub 2019 Mar 26.

25.

Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi.

Krizsán K, Almási É, Merényi Z, Sahu N, Virágh M, Kószó T, Mondo S, Kiss B, Bálint B, Kües U, Barry K, Cseklye J, Hegedüs B, Henrissat B, Johnson J, Lipzen A, Ohm RA, Nagy I, Pangilinan J, Yan J, Xiong Y, Grigoriev IV, Hibbett DS, Nagy LG.

Proc Natl Acad Sci U S A. 2019 Apr 9;116(15):7409-7418. doi: 10.1073/pnas.1817822116. Epub 2019 Mar 22.

26.

Broad-specificity GH131 β-glucanases are a hallmark of fungi and oomycetes that colonize plants.

Anasontzis GE, Lebrun MH, Haon M, Champion C, Kohler A, Lenfant N, Martin F, O'Connell RJ, Riley R, Grigoriev IV, Henrissat B, Berrin JG, Rosso MN.

Environ Microbiol. 2019 Aug;21(8):2724-2739. doi: 10.1111/1462-2920.14596. Epub 2019 Apr 21.

27.

A metagenomics investigation of carbohydrate-active enzymes along the goat and camel intestinal tract.

Al-Masaudi S, El Kaoutari A, Drula E, Redwan EM, Lombard V, Henrissat B.

Int Microbiol. 2019 Dec;22(4):429-435. doi: 10.1007/s10123-019-00068-2. Epub 2019 Mar 14.

PMID:
30875036
28.

Discovery of novel carbohydrate-active enzymes through the rational exploration of the protein sequences space.

Helbert W, Poulet L, Drouillard S, Mathieu S, Loiodice M, Couturier M, Lombard V, Terrapon N, Turchetto J, Vincentelli R, Henrissat B.

Proc Natl Acad Sci U S A. 2019 Mar 26;116(13):6063-6068. doi: 10.1073/pnas.1815791116. Epub 2019 Mar 8. Erratum in: Proc Natl Acad Sci U S A. 2019 May 14;116(20):10184-10185.

29.

Unraveling the subtleties of β-(1→3)-glucan phosphorylase specificity in the GH94, GH149, and GH161 glycoside hydrolase families.

Kuhaudomlarp S, Pergolizzi G, Patron NJ, Henrissat B, Field RA.

J Biol Chem. 2019 Apr 19;294(16):6483-6493. doi: 10.1074/jbc.RA119.007712. Epub 2019 Feb 28.

30.

Mycobacterium ulcerans mycolactones-fungi crosstalking.

Hammoudi N, Cassagne C, Armstrong N, Ranque S, Henrissat B, Drancourt M, Bouam A.

Sci Rep. 2019 Feb 28;9(1):3028. doi: 10.1038/s41598-019-39927-3.

31.

Genomic insights from Monoglobus pectinilyticus: a pectin-degrading specialist bacterium in the human colon.

Kim CC, Healey GR, Kelly WJ, Patchett ML, Jordens Z, Tannock GW, Sims IM, Bell TJ, Hedderley D, Henrissat B, Rosendale DI.

ISME J. 2019 Jun;13(6):1437-1456. doi: 10.1038/s41396-019-0363-6. Epub 2019 Feb 6.

PMID:
30728469
32.

Comparative genomics of Rhizophagus irregularis, R. cerebriforme, R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina.

Morin E, Miyauchi S, San Clemente H, Chen ECH, Pelin A, de la Providencia I, Ndikumana S, Beaudet D, Hainaut M, Drula E, Kuo A, Tang N, Roy S, Viala J, Henrissat B, Grigoriev IV, Corradi N, Roux C, Martin FM.

New Phytol. 2019 May;222(3):1584-1598. doi: 10.1111/nph.15687. Epub 2019 Feb 25.

PMID:
30636349
33.

Metagenomic Assembly and Prokaryotic Metagenome-Assembled Genome Sequences from the Northern Gulf of Mexico "Dead Zone".

Thrash JC, Baker BJ, Seitz KW, Temperton B, Campbell LG, Rabalais NN, Henrissat B, Mason OU.

Microbiol Resour Announc. 2018 Sep 6;7(9). pii: e01033-18. doi: 10.1128/MRA.01033-18. eCollection 2018 Sep.

34.

Proteomic Dissection of the Cellulolytic Machineries Used by Soil-Dwelling Bacteroidetes.

Taillefer M, Arntzen MØ, Henrissat B, Pope PB, Larsbrink J.

mSystems. 2018 Nov 20;3(6). pii: e00240-18. doi: 10.1128/mSystems.00240-18. eCollection 2018 Nov-Dec.

35.

Nuclear genome sequence of the plastid-lacking cryptomonad Goniomonas avonlea provides insights into the evolution of secondary plastids.

Cenci U, Sibbald SJ, Curtis BA, Kamikawa R, Eme L, Moog D, Henrissat B, Maréchal E, Chabi M, Djemiel C, Roger AJ, Kim E, Archibald JM.

BMC Biol. 2018 Nov 28;16(1):137. doi: 10.1186/s12915-018-0593-5.

36.

Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle.

Murat C, Payen T, Noel B, Kuo A, Morin E, Chen J, Kohler A, Krizsán K, Balestrini R, Da Silva C, Montanini B, Hainaut M, Levati E, Barry KW, Belfiori B, Cichocki N, Clum A, Dockter RB, Fauchery L, Guy J, Iotti M, Le Tacon F, Lindquist EA, Lipzen A, Malagnac F, Mello A, Molinier V, Miyauchi S, Poulain J, Riccioni C, Rubini A, Sitrit Y, Splivallo R, Traeger S, Wang M, Žifčáková L, Wipf D, Zambonelli A, Paolocci F, Nowrousian M, Ottonello S, Baldrian P, Spatafora JW, Henrissat B, Nagy LG, Aury JM, Wincker P, Grigoriev IV, Bonfante P, Martin FM.

Nat Ecol Evol. 2018 Dec;2(12):1956-1965. doi: 10.1038/s41559-018-0710-4. Epub 2018 Nov 12.

37.

The obligate alkalophilic soda-lake fungus Sodiomyces alkalinus has shifted to a protein diet.

Grum-Grzhimaylo AA, Falkoski DL, van den Heuvel J, Valero-Jiménez CA, Min B, Choi IG, Lipzen A, Daum CG, Aanen DK, Tsang A, Henrissat B, Bilanenko EN, de Vries RP, van Kan JAL, Grigoriev IV, Debets AJM.

Mol Ecol. 2018 Dec;27(23):4808-4819. doi: 10.1111/mec.14912. Epub 2018 Nov 22.

PMID:
30368956
38.

Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri.

Vesth TC, Nybo JL, Theobald S, Frisvad JC, Larsen TO, Nielsen KF, Hoof JB, Brandl J, Salamov A, Riley R, Gladden JM, Phatale P, Nielsen MT, Lyhne EK, Kogle ME, Strasser K, McDonnell E, Barry K, Clum A, Chen C, LaButti K, Haridas S, Nolan M, Sandor L, Kuo A, Lipzen A, Hainaut M, Drula E, Tsang A, Magnuson JK, Henrissat B, Wiebenga A, Simmons BA, Mäkelä MR, de Vries RP, Grigoriev IV, Mortensen UH, Baker SE, Andersen MR.

Nat Genet. 2018 Dec;50(12):1688-1695. doi: 10.1038/s41588-018-0246-1. Epub 2018 Oct 22.

PMID:
30349117
39.

A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation.

Cartmell A, Muñoz-Muñoz J, Briggs JA, Ndeh DA, Lowe EC, Baslé A, Terrapon N, Stott K, Heunis T, Gray J, Yu L, Dupree P, Fernandes PZ, Shah S, Williams SJ, Labourel A, Trost M, Henrissat B, Gilbert HJ.

Nat Microbiol. 2018 Nov;3(11):1314-1326. doi: 10.1038/s41564-018-0258-8. Epub 2018 Oct 22. Erratum in: Nat Microbiol. 2019 Nov;4(11):2021-2023.

40.

Analysis of carbohydrate-active enzymes in Thermogemmatispora sp. strain T81 reveals carbohydrate degradation ability.

Tomazini A Jr, Lal S, Munir R, Stott M, Henrissat B, Polikarpov I, Sparling R, Levin DB.

Can J Microbiol. 2018 Dec;64(12):992-1003. doi: 10.1139/cjm-2018-0336. Epub 2018 Oct 19.

PMID:
30338698
41.

From proteins to polysaccharides: lifestyle and genetic evolution of Coprothermobacter proteolyticus.

Kunath BJ, Delogu F, Naas AE, Arntzen MØ, Eijsink VGH, Henrissat B, Hvidsten TR, Pope PB.

ISME J. 2019 Mar;13(3):603-617. doi: 10.1038/s41396-018-0290-y. Epub 2018 Oct 12.

42.

Leveraging single-cell genomics to expand the fungal tree of life.

Ahrendt SR, Quandt CA, Ciobanu D, Clum A, Salamov A, Andreopoulos B, Cheng JF, Woyke T, Pelin A, Henrissat B, Reynolds NK, Benny GL, Smith ME, James TY, Grigoriev IV.

Nat Microbiol. 2018 Dec;3(12):1417-1428. doi: 10.1038/s41564-018-0261-0. Epub 2018 Oct 8.

43.

The human gut microbe Bacteroides thetaiotaomicron encodes the founding member of a novel glycosaminoglycan-degrading polysaccharide lyase family PL29.

Ndeh D, Munoz Munoz J, Cartmell A, Bulmer D, Wills C, Henrissat B, Gray J.

J Biol Chem. 2018 Nov 16;293(46):17906-17916. doi: 10.1074/jbc.RA118.004510. Epub 2018 Sep 27.

44.

Functional metagenomics identifies an exosialidase with an inverting catalytic mechanism that defines a new glycoside hydrolase family (GH156).

Chuzel L, Ganatra MB, Rapp E, Henrissat B, Taron CH.

J Biol Chem. 2018 Nov 23;293(47):18138-18150. doi: 10.1074/jbc.RA118.003302. Epub 2018 Sep 24.

45.

Rapid Divergence of Genome Architectures Following the Origin of an Ectomycorrhizal Symbiosis in the Genus Amanita.

Hess J, Skrede I, Chaib De Mares M, Hainaut M, Henrissat B, Pringle A.

Mol Biol Evol. 2018 Nov 1;35(11):2786-2804. doi: 10.1093/molbev/msy179.

46.

Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times.

Liang X, Whitham JM, Holwerda EK, Shao X, Tian L, Wu YW, Lombard V, Henrissat B, Klingeman DM, Yang ZK, Podar M, Richard TL, Elkins JG, Brown SD, Lynd LR.

Biotechnol Biofuels. 2018 Sep 6;11:243. doi: 10.1186/s13068-018-1238-1. eCollection 2018.

47.

Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass.

Miyauchi S, Rancon A, Drula E, Hage H, Chaduli D, Favel A, Grisel S, Henrissat B, Herpoël-Gimbert I, Ruiz-Dueñas FJ, Chevret D, Hainaut M, Lin J, Wang M, Pangilinan J, Lipzen A, Lesage-Meessen L, Navarro D, Riley R, Grigoriev IV, Zhou S, Raouche S, Rosso MN.

Biotechnol Biofuels. 2018 Jul 23;11:201. doi: 10.1186/s13068-018-1198-5. eCollection 2018.

48.

Production of α-1,3-L-arabinofuranosidase active on substituted xylan does not improve compost degradation by Agaricus bisporus.

Vos AM, Jurak E, de Gijsel P, Ohm RA, Henrissat B, Lugones LG, Kabel MA, Wösten HAB.

PLoS One. 2018 Jul 24;13(7):e0201090. doi: 10.1371/journal.pone.0201090. eCollection 2018.

49.

Genome Sequencing and analyses of Two Marine Fungi from the North Sea Unraveled a Plethora of Novel Biosynthetic Gene Clusters.

Kumar A, Sørensen JL, Hansen FT, Arvas M, Syed MF, Hassan L, Benz JP, Record E, Henrissat B, Pöggeler S, Kempken F.

Sci Rep. 2018 Jul 5;8(1):10187. doi: 10.1038/s41598-018-28473-z.

50.

Talaromyces borbonicus, sp. nov., a novel fungus from biodegraded Arundo donax with potential abilities in lignocellulose conversion.

Varriale S, Houbraken J, Granchi Z, Pepe O, Cerullo G, Ventorino V, Chin-A-Woeng T, Meijer M, Riley R, Grigoriev IV, Henrissat B, de Vries RP, Faraco V.

Mycologia. 2018 Mar-Apr;110(2):316-324. doi: 10.1080/00275514.2018.1456835. Epub 2018 May 29.

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