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Items: 1 to 50 of 99

1.

The T-Box Riboswitch: tRNA as an Effector to Modulate Gene Regulation.

Kreuzer KD, Henkin TM.

Microbiol Spectr. 2018 Jul;6(4). doi: 10.1128/microbiolspec.RWR-0028-2018. Review.

2.

New tRNA contacts facilitate ligand binding in a Mycobacterium smegmatis T box riboswitch.

Sherwood AV, Frandsen JK, Grundy FJ, Henkin TM.

Proc Natl Acad Sci U S A. 2018 Apr 10;115(15):3894-3899. doi: 10.1073/pnas.1721254115. Epub 2018 Mar 26.

3.

Classic Spotlights: Selected Highlights from the First 100 Years of the Journal of Bacteriology.

Armitage JP, Becker A, Christie PJ, de Boer PAJ, DiRita VJ, Gourse RL, Henkin TM, Margolin W, Metcalf WW, Mullineaux CW, O'Toole GA, Parkinson JS, Schneewind O, Silhavy TJ, Stock AM, Zhulin IB.

J Bacteriol. 2017 Jun 13;199(13). pii: e00062-17. doi: 10.1128/JB.00062-17. Print 2017 Jul 1. No abstract available.

4.

Riboswitch-Mediated Gene Regulation: Novel RNA Architectures Dictate Gene Expression Responses.

Sherwood AV, Henkin TM.

Annu Rev Microbiol. 2016 Sep 8;70:361-74. doi: 10.1146/annurev-micro-091014-104306. Review.

PMID:
27607554
5.

Classic Spotlight: Bacterial Endospore Resistance, Structure, and Genetics.

Henkin TM.

J Bacteriol. 2016 Jun 27;198(14):1904. doi: 10.1128/JB.00312-16. Print 2016 Jul 15. No abstract available.

6.

Classic Spotlight: Bacteria versus Phage-the Battle Rages!

Henkin TM.

J Bacteriol. 2016 Mar 17;198(7):1007. doi: 10.1128/JB.00012-16. Print 2016 Apr. No abstract available.

7.

Classic Spotlight: Regulatory Function of Leader RNAs.

Henkin TM.

J Bacteriol. 2016 Feb 12;198(5):743. doi: 10.1128/JB.00947-15. Print 2016 Mar. No abstract available.

8.
9.

Codon-Anticodon Recognition in the Bacillus subtilis glyQS T Box Riboswitch: RNA-DEPENDENT CODON SELECTION OUTSIDE THE RIBOSOME.

Caserta E, Liu LC, Grundy FJ, Henkin TM.

J Biol Chem. 2015 Sep 18;290(38):23336-47. doi: 10.1074/jbc.M115.673236. Epub 2015 Jul 30.

10.

The Bacillus subtilis tyrZ gene encodes a highly selective tyrosyl-tRNA synthetase and is regulated by a MarR regulator and T box riboswitch.

Williams-Wagner RN, Grundy FJ, Raina M, Ibba M, Henkin TM.

J Bacteriol. 2015 May;197(9):1624-31. doi: 10.1128/JB.00008-15. Epub 2015 Mar 2.

11.

T box riboswitches in Actinobacteria: translational regulation via novel tRNA interactions.

Sherwood AV, Grundy FJ, Henkin TM.

Proc Natl Acad Sci U S A. 2015 Jan 27;112(4):1113-8. doi: 10.1073/pnas.1424175112. Epub 2015 Jan 12.

12.

Preface - riboswitches.

Henkin TM.

Biochim Biophys Acta. 2014 Oct;1839(10):899. doi: 10.1016/j.bbagrm.2014.08.013. Epub 2014 Aug 23. No abstract available.

PMID:
25158154
13.

The T box riboswitch: A novel regulatory RNA that utilizes tRNA as its ligand.

Henkin TM.

Biochim Biophys Acta. 2014 Oct;1839(10):959-963. doi: 10.1016/j.bbagrm.2014.04.022. Epub 2014 May 9. Review.

14.

T box RNA decodes both the information content and geometry of tRNA to affect gene expression.

Grigg JC, Chen Y, Grundy FJ, Henkin TM, Pollack L, Ke A.

Proc Natl Acad Sci U S A. 2013 Apr 30;110(18):7240-5. doi: 10.1073/pnas.1222214110. Epub 2013 Apr 15.

15.

In vivo and in vitro analyses of regulation of the pheromone-responsive prgQ promoter by the PrgX pheromone receptor protein.

Caserta E, Haemig HA, Manias DA, Tomsic J, Grundy FJ, Henkin TM, Dunny GM.

J Bacteriol. 2012 Jul;194(13):3386-94. doi: 10.1128/JB.00364-12. Epub 2012 Apr 27.

16.

Analysis of lysine recognition and specificity of the Bacillus subtilis L box riboswitch.

Wilson-Mitchell SN, Grundy FJ, Henkin TM.

Nucleic Acids Res. 2012 Jul;40(12):5706-17. doi: 10.1093/nar/gks212. Epub 2012 Mar 13.

17.

Variable sequences outside the SAM-binding core critically influence the conformational dynamics of the SAM-III/SMK box riboswitch.

Lu C, Smith AM, Ding F, Chowdhury A, Henkin TM, Ke A.

J Mol Biol. 2011 Jun 24;409(5):786-99. doi: 10.1016/j.jmb.2011.04.039. Epub 2011 Apr 27.

18.

Regulation at multiple levels: themes and variations.

Henkin TM, Casadesús J.

Curr Opin Microbiol. 2011 Apr;14(2):115-7. doi: 10.1016/j.mib.2011.02.002. Epub 2011 Mar 5. No abstract available.

PMID:
21382741
19.

The SAM-responsive S(MK) box is a reversible riboswitch.

Smith AM, Fuchs RT, Grundy FJ, Henkin TM.

Mol Microbiol. 2010 Dec;78(6):1393-402. doi: 10.1111/j.1365-2958.2010.07410.x. Epub 2010 Oct 18.

20.

Tuning riboswitch regulation through conformational selection.

Wilson RC, Smith AM, Fuchs RT, Kleckner IR, Henkin TM, Foster MP.

J Mol Biol. 2011 Jan 28;405(4):926-38. doi: 10.1016/j.jmb.2010.10.056. Epub 2010 Nov 12.

21.

SAM recognition and conformational switching mechanism in the Bacillus subtilis yitJ S box/SAM-I riboswitch.

Lu C, Ding F, Chowdhury A, Pradhan V, Tomsic J, Holmes WM, Henkin TM, Ke A.

J Mol Biol. 2010 Dec 17;404(5):803-18. doi: 10.1016/j.jmb.2010.09.059. Epub 2010 Oct 15.

22.

NMR structure and dynamics of the Specifier Loop domain from the Bacillus subtilis tyrS T box leader RNA.

Wang J, Henkin TM, Nikonowicz EP.

Nucleic Acids Res. 2010 Jun;38(10):3388-98. doi: 10.1093/nar/gkq020. Epub 2010 Jan 27.

23.

Direct evidence for control of the pheromone-inducible prgQ operon of Enterococcus faecalis plasmid pCF10 by a countertranscript-driven attenuation mechanism.

Johnson CM, Manias DA, Haemig HA, Shokeen S, Weaver KE, Henkin TM, Dunny GM.

J Bacteriol. 2010 Mar;192(6):1634-42. doi: 10.1128/JB.01525-09. Epub 2010 Jan 22.

24.

Riboswitch RNAs: regulation of gene expression by direct monitoring of a physiological signal.

Smith AM, Fuchs RT, Grundy FJ, Henkin TM.

RNA Biol. 2010 Jan-Feb;7(1):104-10. Epub 2010 Jan 25. Review.

25.

The T box mechanism: tRNA as a regulatory molecule.

Green NJ, Grundy FJ, Henkin TM.

FEBS Lett. 2010 Jan 21;584(2):318-24. doi: 10.1016/j.febslet.2009.11.056. Review.

26.

Analysis of tRNA-directed transcription antitermination in the T box system in vivo.

Henkin TM.

Methods Mol Biol. 2009;540:281-90. doi: 10.1007/978-1-59745-558-9_20.

PMID:
19381567
27.

RNA-dependent RNA switches in bacteria.

Henkin TM.

Methods Mol Biol. 2009;540:207-14. doi: 10.1007/978-1-59745-558-9_15. Review.

PMID:
19381562
28.

Biochemical features and functional implications of the RNA-based T-box regulatory mechanism.

Gutiérrez-Preciado A, Henkin TM, Grundy FJ, Yanofsky C, Merino E.

Microbiol Mol Biol Rev. 2009 Mar;73(1):36-61. doi: 10.1128/MMBR.00026-08. Review.

29.

Riboswitch RNAs: using RNA to sense cellular metabolism.

Henkin TM.

Genes Dev. 2008 Dec 15;22(24):3383-90. doi: 10.1101/gad.1747308. Review.

30.

In vitro approaches to analysis of transcription termination.

Artsimovitch I, Henkin TM.

Methods. 2009 Jan;47(1):37-43. doi: 10.1016/j.ymeth.2008.10.006. Epub 2008 Oct 21.

31.

Crystal structures of the SAM-III/S(MK) riboswitch reveal the SAM-dependent translation inhibition mechanism.

Lu C, Smith AM, Fuchs RT, Ding F, Rajashankar K, Henkin TM, Ke A.

Nat Struct Mol Biol. 2008 Oct;15(10):1076-83. doi: 10.1038/nsmb.1494. Epub 2008 Sep 21.

32.

4,5-Disubstituted oxazolidinones: High affinity molecular effectors of RNA function.

Anupam R, Nayek A, Green NJ, Grundy FJ, Henkin TM, Means JA, Bergmeier SC, Hines JV.

Bioorg Med Chem Lett. 2008 Jun 15;18(12):3541-4. doi: 10.1016/j.bmcl.2008.05.015. Epub 2008 May 6.

33.

Molecular basis of gene regulation by the THI-box riboswitch.

Ontiveros-Palacios N, Smith AM, Grundy FJ, Soberon M, Henkin TM, Miranda-Ríos J.

Mol Microbiol. 2008 Feb;67(4):793-803. doi: 10.1111/j.1365-2958.2007.06088.x. Epub 2007 Dec 19.

34.

Mechanisms of resistance to an amino acid antibiotic that targets translation.

Ataide SF, Wilson SN, Dang S, Rogers TE, Roy B, Banerjee R, Henkin TM, Ibba M.

ACS Chem Biol. 2007 Dec 21;2(12):819-27. Erratum in: ACS Chem Biol. 2008 Feb 15;3(2):130.

35.
36.

Sensing metabolic signals with nascent RNA transcripts: the T box and S box riboswitches as paradigms.

Henkin TM, Grundy FJ.

Cold Spring Harb Symp Quant Biol. 2006;71:231-7. Review.

PMID:
17381302
37.

S-adenosylmethionine directly inhibits binding of 30S ribosomal subunits to the SMK box translational riboswitch RNA.

Fuchs RT, Grundy FJ, Henkin TM.

Proc Natl Acad Sci U S A. 2007 Mar 20;104(12):4876-80. Epub 2007 Mar 9.

38.

From ribosome to riboswitch: control of gene expression in bacteria by RNA structural rearrangements.

Grundy FJ, Henkin TM.

Crit Rev Biochem Mol Biol. 2006 Nov-Dec;41(6):329-38. Review.

PMID:
17092822
39.

Control of acetyl-coenzyme A synthetase (AcsA) activity by acetylation/deacetylation without NAD(+) involvement in Bacillus subtilis.

Gardner JG, Grundy FJ, Henkin TM, Escalante-Semerena JC.

J Bacteriol. 2006 Aug;188(15):5460-8. Erratum in: J Bacteriol. 2006 Sep;188(18):6715.

40.

The phage meeting: Classical venue, new momentum.

Young R, Henkin TM, Turnbough CL Jr.

J Bacteriol. 2006 Jul;188(13):4597-600. Review. No abstract available.

41.

tRNA regulation of gene expression: interactions of an mRNA 5'-UTR with a regulatory tRNA.

Nelson AR, Henkin TM, Agris PF.

RNA. 2006 Jul;12(7):1254-61. Epub 2006 Jun 1. Erratum in: RNA. 2006 Aug;12(8):1601.

42.
43.
44.

The S(MK) box is a new SAM-binding RNA for translational regulation of SAM synthetase.

Fuchs RT, Grundy FJ, Henkin TM.

Nat Struct Mol Biol. 2006 Mar;13(3):226-33. Epub 2006 Feb 19.

PMID:
16491091
45.
46.

Structural transitions induced by the interaction between tRNA(Gly) and the Bacillus subtilis glyQS T box leader RNA.

Yousef MR, Grundy FJ, Henkin TM.

J Mol Biol. 2005 Jun 3;349(2):273-87. Epub 2005 Apr 8.

PMID:
15890195
47.

Monitoring uncharged tRNA during transcription of the Bacillus subtilis glyQS gene.

Grundy FJ, Yousef MR, Henkin TM.

J Mol Biol. 2005 Feb 11;346(1):73-81. Epub 2004 Dec 15.

PMID:
15663928
48.

MotPS is the stator-force generator for motility of alkaliphilic Bacillus, and its homologue is a second functional Mot in Bacillus subtilis.

Ito M, Hicks DB, Henkin TM, Guffanti AA, Powers BD, Zvi L, Uematsu K, Krulwich TA.

Mol Microbiol. 2004 Aug;53(4):1035-49.

49.
50.

Regulation of gene expression by effectors that bind to RNA.

Grundy FJ, Henkin TM.

Curr Opin Microbiol. 2004 Apr;7(2):126-31. Review.

PMID:
15063848

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