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Items: 33

1.

California condor microbiomes: Bacterial variety and functional properties in captive-bred individuals.

Jacobs L, McMahon BH, Berendzen J, Longmire J, Gleasner C, Hengartner NW, Vuyisich M, Cohn JR, Jenkins M, Bartlow AW, Fair JM.

PLoS One. 2019 Dec 11;14(12):e0225858. doi: 10.1371/journal.pone.0225858. eCollection 2019.

2.

Principles Governing Establishment versus Collapse of HIV-1 Cellular Spread.

Hataye JM, Casazza JP, Best K, Liang CJ, Immonen TT, Ambrozak DR, Darko S, Henry AR, Laboune F, Maldarelli F, Douek DC, Hengartner NW, Yamamoto T, Keele BF, Perelson AS, Koup RA.

Cell Host Microbe. 2019 Dec 11;26(6):748-763.e20. doi: 10.1016/j.chom.2019.10.006. Epub 2019 Nov 21.

PMID:
31761718
3.

Cyclooxygenase-2 haplotypes influence the longitudinal risk of malaria and severe malarial anemia in Kenyan children from a holoendemic transmission region.

Anyona SB, Hengartner NW, Raballah E, Ong'echa JM, Lauve N, Cheng Q, Fenimore PW, Ouma C, Lambert CG, McMahon BH, Perkins DJ.

J Hum Genet. 2020 Jan;65(2):99-113. doi: 10.1038/s10038-019-0692-3. Epub 2019 Oct 29.

PMID:
31664161
4.

Computing long time scale biomolecular dynamics using quasi-stationary distribution kinetic Monte Carlo (QSD-KMC).

Agarwal A, Hengartner NW, Gnanakaran S, Voter AF.

J Chem Phys. 2019 Aug 21;151(7):074109. doi: 10.1063/1.5094457.

PMID:
31438708
5.

Integrated OMICS platforms identify LAIR1 genetic variants as novel predictors of cross-sectional and longitudinal susceptibility to severe malaria and all-cause mortality in Kenyan children.

Achieng AO, Hengartner NW, Raballah E, Cheng Q, Anyona SB, Lauve N, Guyah B, Foo-Hurwitz I, Ong'echa JM, McMahon BH, Ouma C, Lambert CG, Perkins DJ.

EBioMedicine. 2019 Jul;45:290-302. doi: 10.1016/j.ebiom.2019.06.043. Epub 2019 Jul 2.

6.

CAT: computer aided triage improving upon the Bayes risk through ε-refusal triage rules.

Hengartner N, Cuellar L, Wu XC, Tourassi G, Qiu J, Christian B, Bhattacharya T.

BMC Bioinformatics. 2018 Dec 21;19(Suppl 18):485. doi: 10.1186/s12859-018-2503-9.

7.

Variation in cell-associated unspliced HIV RNA on antiretroviral therapy is associated with the circadian regulator brain-and-muscle-ARNT-like-1.

Chang CC, Naranbhai V, Stern J, Roche M, Dantanarayana A, Ke R, Tennakoon S, Solomon A, Hoh R, Hartogensis W, Hecht FM, Sikaris K, Price DJ, Elliott JH, Deeks SG, Churchill M, Cameron PU, Hengartner N, Perelson AS, Lewin SR.

AIDS. 2018 Sep 24;32(15):2119-2128. doi: 10.1097/QAD.0000000000001937. Erratum in: AIDS. 2018 Nov 13;32(17):2643-2647.

8.

Presentation matters: Impact of association of amphiphilic LPS with serum carrier proteins on innate immune signaling.

Stromberg LR, Mendez HM, Kubicek-Sutherland JZ, Graves SW, Hengartner NW, Mukundan H.

PLoS One. 2018 Jun 14;13(6):e0198531. doi: 10.1371/journal.pone.0198531. eCollection 2018.

9.

Summary results of the 2014-2015 DARPA Chikungunya challenge.

Del Valle SY, McMahon BH, Asher J, Hatchett R, Lega JC, Brown HE, Leany ME, Pantazis Y, Roberts DJ, Moore S, Peterson AT, Escobar LE, Qiao H, Hengartner NW, Mukundan H.

BMC Infect Dis. 2018 May 30;18(1):245. doi: 10.1186/s12879-018-3124-7. Review.

10.

Donor-Recipient Identification in Para- and Poly-phyletic Trees Under Alternative HIV-1 Transmission Hypotheses Using Approximate Bayesian Computation.

Romero-Severson EO, Bulla I, Hengartner N, Bártolo I, Abecasis A, Azevedo-Pereira JM, Taveira N, Leitner T.

Genetics. 2017 Nov;207(3):1089-1101. doi: 10.1534/genetics.117.300284. Epub 2017 Sep 14.

11.

Reduced Parasite Burden in Children with Falciparum Malaria and Bacteremia Coinfections: Role of Mediators of Inflammation.

Davenport GC, Hittner JB, Otieno V, Karim Z, Mukundan H, Fenimore PW, Hengartner NW, McMahon BH, Kempaiah P, Ong'echa JM, Perkins DJ.

Mediators Inflamm. 2016;2016:4286576. doi: 10.1155/2016/4286576. Epub 2016 Jun 22.

12.

Membrane Insertion for the Detection of Lipopolysaccharides: Exploring the Dynamics of Amphiphile-in-Lipid Assays.

Stromberg LR, Hengartner NW, Swingle KL, Moxley RA, Graves SW, Montaño GA, Mukundan H.

PLoS One. 2016 May 26;11(5):e0156295. doi: 10.1371/journal.pone.0156295. eCollection 2016.

13.

Hypothyroidism risk compared among nine common bipolar disorder therapies in a large US cohort.

Lambert CG, Mazurie AJ, Lauve NR, Hurwitz NG, Young SS, Obenchain RL, Hengartner NW, Perkins DJ, Tohen M, Kerner B.

Bipolar Disord. 2016 May;18(3):247-60. doi: 10.1111/bdi.12391.

14.

Crucial role of IL1beta and C3a in the in vitro-response of multipotent mesenchymal stromal cells to inflammatory mediators of polytrauma.

Hengartner NE, Fiedler J, Schrezenmeier H, Huber-Lang M, Brenner RE.

PLoS One. 2015 Jan 6;10(1):e0116772. doi: 10.1371/journal.pone.0116772. eCollection 2015.

15.

Impact of clade, geography, and age of the epidemic on HIV-1 neutralization by antibodies.

Hraber P, Korber BT, Lapedes AS, Bailer RT, Seaman MS, Gao H, Greene KM, McCutchan F, Williamson C, Kim JH, Tovanabutra S, Hahn BH, Swanstrom R, Thomson MM, Gao F, Harris L, Giorgi E, Hengartner N, Bhattacharya T, Mascola JR, Montefiori DC.

J Virol. 2014 Nov;88(21):12623-43. doi: 10.1128/JVI.01705-14. Epub 2014 Aug 20.

16.

Metagenome sequence analysis of filamentous microbial communities obtained from geochemically distinct geothermal channels reveals specialization of three aquificales lineages.

Takacs-Vesbach C, Inskeep WP, Jay ZJ, Herrgard MJ, Rusch DB, Tringe SG, Kozubal MA, Hamamura N, Macur RE, Fouke BW, Reysenbach AL, McDermott TR, Jennings Rd, Hengartner NW, Xie G.

Front Microbiol. 2013 May 29;4:84. doi: 10.3389/fmicb.2013.00084. eCollection 2013.

17.

IL-1β inhibits human osteoblast migration.

Hengartner NE, Fiedler J, Ignatius A, Brenner RE.

Mol Med. 2013 Apr 30;19:36-42. doi: 10.2119/molmed.2012.00058.

18.

An epidemiological model of spatial coupling for trips longer than the infectious period.

Daniel WB, Hengartner NW, Rivera MK, Powell DR, McPherson TN.

Math Biosci. 2013 Mar;242(1):1-8. doi: 10.1016/j.mbs.2012.11.002. Epub 2012 Dec 14.

PMID:
23246512
19.

Rapid phylogenetic and functional classification of short genomic fragments with signature peptides.

Berendzen J, Bruno WJ, Cohn JD, Hengartner NW, Kuske CR, McMahon BH, Wolinsky MA, Xie G.

BMC Res Notes. 2012 Aug 28;5:460. doi: 10.1186/1756-0500-5-460.

20.

Common bacterial responses in six ecosystems exposed to 10 years of elevated atmospheric carbon dioxide.

Dunbar J, Eichorst SA, Gallegos-Graves LV, Silva S, Xie G, Hengartner NW, Evans RD, Hungate BA, Jackson RB, Megonigal JP, Schadt CW, Vilgalys R, Zak DR, Kuske CR.

Environ Microbiol. 2012 May;14(5):1145-58. doi: 10.1111/j.1462-2920.2011.02695.x. Epub 2012 Jan 20.

21.

Upper limit to magnetism in LaAlO3/SrTiO3 heterostructures.

Fitzsimmons MR, Hengartner NW, Singh S, Zhernenkov M, Bruno FY, Santamaria J, Brinkman A, Huijben M, Molegraaf HJ, de la Venta J, Schuller IK.

Phys Rev Lett. 2011 Nov 18;107(21):217201. Epub 2011 Nov 14.

PMID:
22181916
22.

Impact of spectral smoothing on gamma radiation portal alarm probabilities.

Burr T, Hamada M, Hengartner N.

Appl Radiat Isot. 2011 Oct;69(10):1436-46. doi: 10.1016/j.apradiso.2011.05.009. Epub 2011 May 17.

PMID:
21612936
23.

Adiabatic coarse-graining and simulations of stochastic biochemical networks.

Sinitsyn NA, Hengartner N, Nemenman I.

Proc Natl Acad Sci U S A. 2009 Jun 30;106(26):10546-51. doi: 10.1073/pnas.0809340106. Epub 2009 Jun 12.

24.

Efficiency of competitions.

Ben-Naim E, Hengartner NW.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Aug;76(2 Pt 2):026106. Epub 2007 Aug 13.

PMID:
17930103
25.

Statistical reconstruction for cosmic ray muon tomography.

Schultz LJ, Blanpied GS, Borozdin KN, Fraser AM, Hengartner NW, Klimenko AV, Morris CL, Orum C, Sossong MJ.

IEEE Trans Image Process. 2007 Aug;16(8):1985-93.

PMID:
17688203
26.

Estimating the reproduction number from the initial phase of the Spanish flu pandemic waves in Geneva, Switzerland.

Chowell G, Ammon CE, Hengartner NW, Hyman JM.

Math Biosci Eng. 2007 Jul;4(3):457-70.

27.

Accounting for seasonal patterns in syndromic surveillance data for outbreak detection.

Burr T, Graves T, Klamann R, Michalak S, Picard R, Hengartner N.

BMC Med Inform Decis Mak. 2006 Dec 4;6:40.

28.

Estimation of the reproductive number of the Spanish flu epidemic in Geneva, Switzerland.

Chowell G, Ammon CE, Hengartner NW, Hyman JM.

Vaccine. 2006 Nov 10;24(44-46):6747-50. Epub 2006 Jun 5.

PMID:
16782243
29.

Predicting scorpion sting incidence in an endemic region using climatological variables.

Chowell G, Hyman JM, Díaz-Dueñas P, Hengartner NW.

Int J Environ Health Res. 2005 Dec;15(6):425-35.

PMID:
16506436
30.

Transmission dynamics of the great influenza pandemic of 1918 in Geneva, Switzerland: Assessing the effects of hypothetical interventions.

Chowell G, Ammon CE, Hengartner NW, Hyman JM.

J Theor Biol. 2006 Jul 21;241(2):193-204. Epub 2006 Jan 4.

PMID:
16387331
31.

The role of spatial mixing in the spread of foot-and-mouth disease.

Chowell G, Rivas AL, Hengartner NW, Hyman JM, Castillo-Chavez C.

Prev Vet Med. 2006 Mar 16;73(4):297-314. Epub 2005 Nov 11.

PMID:
16290298
32.

The basic reproductive number of Ebola and the effects of public health measures: the cases of Congo and Uganda.

Chowell G, Hengartner NW, Castillo-Chavez C, Fenimore PW, Hyman JM.

J Theor Biol. 2004 Jul 7;229(1):119-26.

PMID:
15178190
33.

Assessing between-block heterogeneity within the post-strata of the 1990 Post-Enumeration Survey.

Hengartner N, Speed TP.

J Am Stat Assoc. 1993 Sep;88(423):1,119-29.

PMID:
12155417

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