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Items: 1 to 50 of 192

1.

Capsids and Genomes of Jumbo-Sized Bacteriophages Reveal the Evolutionary Reach of the HK97 Fold.

Hua J, Huet A, Lopez CA, Toropova K, Pope WH, Duda RL, Hendrix RW, Conway JF.

MBio. 2017 Oct 17;8(5). pii: e01579-17. doi: 10.1128/mBio.01579-17.

2.

Flexible Connectors between Capsomer Subunits that Regulate Capsid Assembly.

Hasek ML, Maurer JB, Hendrix RW, Duda RL.

J Mol Biol. 2017 Aug 4;429(16):2474-2489. doi: 10.1016/j.jmb.2017.07.002. Epub 2017 Jul 10.

3.

On the catalytic mechanism of bacteriophage HK97 capsid crosslinking.

Tso D, Peebles CL, Maurer JB, Duda RL, Hendrix RW.

Virology. 2017 Jun;506:84-91. doi: 10.1016/j.virol.2017.03.011. Epub 2017 Mar 27.

4.

Correct Assembly of the Bacteriophage T5 Procapsid Requires Both the Maturation Protease and the Portal Complex.

Huet A, Duda RL, Hendrix RW, Boulanger P, Conway JF.

J Mol Biol. 2016 Jan 16;428(1):165-181. doi: 10.1016/j.jmb.2015.11.019. Epub 2015 Nov 23.

5.

Genome Sequence of Salmonella enterica Phage Det7.

Casjens SR, Jacobs-Sera D, Hatfull GF, Hendrix RW.

Genome Announc. 2015 May 7;3(3). pii: e00279-15. doi: 10.1128/genomeA.00279-15.

6.

Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity.

Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG, Jacobs WR, Hendrix RW, Lawrence JG, Hatfull GF; Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science; Phage Hunters Integrating Research and Education; Mycobacterial Genetics Course.

Elife. 2015 Apr 28;4:e06416. doi: 10.7554/eLife.06416.

7.

Bacteriophage lambda: Early pioneer and still relevant.

Casjens SR, Hendrix RW.

Virology. 2015 May;479-480:310-30. doi: 10.1016/j.virol.2015.02.010. Epub 2015 Mar 3. Review.

8.

Comparative genomics of Cluster O mycobacteriophages.

Cresawn SG, Pope WH, Jacobs-Sera D, Bowman CA, Russell DA, Dedrick RM, Adair T, Anders KR, Ball S, Bollivar D, Breitenberger C, Burnett SH, Butela K, Byrnes D, Carzo S, Cornely KA, Cross T, Daniels RL, Dunbar D, Findley AM, Gissendanner CR, Golebiewska UP, Hartzog GA, Hatherill JR, Hughes LE, Jalloh CS, De Los Santos C, Ekanem K, Khambule SL, King RA, King-Smith C, Klyczek K, Krukonis GP, Laing C, Lapin JS, Lopez AJ, Mkhwanazi SM, Molloy SD, Moran D, Munsamy V, Pacey E, Plymale R, Poxleitner M, Reyna N, Schildbach JF, Stukey J, Taylor SE, Ware VC, Wellmann AL, Westholm D, Wodarski D, Zajko M, Zikalala TS, Hendrix RW, Hatfull GF.

PLoS One. 2015 Mar 5;10(3):e0118725. doi: 10.1371/journal.pone.0118725. eCollection 2015.

9.

Genome Sequence of Salmonella Phage χ.

Hendrix RW, Ko CC, Jacobs-Sera D, Hatfull GF, Erhardt M, Hughes KT, Casjens SR.

Genome Announc. 2015 Feb 26;3(1). pii: e01229-14. doi: 10.1128/genomeA.01229-14.

10.

Genomics and proteomics of mycobacteriophage patience, an accidental tourist in the Mycobacterium neighborhood.

Pope WH, Jacobs-Sera D, Russell DA, Rubin DH, Kajee A, Msibi ZN, Larsen MH, Jacobs WR Jr, Lawrence JG, Hendrix RW, Hatfull GF.

MBio. 2014 Dec 2;5(6):e02145. doi: 10.1128/mBio.02145-14.

11.

Metastable intermediates as stepping stones on the maturation pathways of viral capsids.

Cardone G, Duda RL, Cheng N, You L, Conway JF, Hendrix RW, Steven AC.

MBio. 2014 Nov 11;5(6):e02067. doi: 10.1128/mBio.02067-14.

12.

Genome Sequence of Salmonella Phage 9NA.

Casjens SR, Leavitt JC, Hatfull GF, Hendrix RW.

Genome Announc. 2014 Aug 21;2(4). pii: e00531-14. doi: 10.1128/genomeA.00531-14.

13.

The delta domain of the HK97 major capsid protein is essential for assembly.

Oh B, Moyer CL, Hendrix RW, Duda RL.

Virology. 2014 May;456-457:171-8. doi: 10.1016/j.virol.2014.03.022. Epub 2014 Apr 10.

14.

Transient contacts on the exterior of the HK97 procapsid that are essential for capsid assembly.

Tso DJ, Hendrix RW, Duda RL.

J Mol Biol. 2014 May 15;426(10):2112-29. doi: 10.1016/j.jmb.2014.03.009. Epub 2014 Mar 20.

15.

Cluster M mycobacteriophages Bongo, PegLeg, and Rey with unusually large repertoires of tRNA isotypes.

Pope WH, Anders KR, Baird M, Bowman CA, Boyle MM, Broussard GW, Chow T, Clase KL, Cooper S, Cornely KA, DeJong RJ, Delesalle VA, Deng L, Dunbar D, Edgington NP, Ferreira CM, Weston Hafer K, Hartzog GA, Hatherill JR, Hughes LE, Ipapo K, Krukonis GP, Meier CG, Monti DL, Olm MR, Page ST, Peebles CL, Rinehart CA, Rubin MR, Russell DA, Sanders ER, Schoer M, Shaffer CD, Wherley J, Vazquez E, Yuan H, Zhang D, Cresawn SG, Jacobs-Sera D, Hendrix RW, Hatfull GF.

J Virol. 2014 Mar;88(5):2461-80. doi: 10.1128/JVI.03363-13. Epub 2013 Dec 11.

16.

Evolutionary relationships among actinophages and a putative adaptation for growth in Streptomyces spp.

Smith MC, Hendrix RW, Dedrick R, Mitchell K, Ko CC, Russell D, Bell E, Gregory M, Bibb MJ, Pethick F, Jacobs-Sera D, Herron P, Buttner MJ, Hatfull GF.

J Bacteriol. 2013 Nov;195(21):4924-35. doi: 10.1128/JB.00618-13. Epub 2013 Aug 30.

17.

Chaperone-protein interactions that mediate assembly of the bacteriophage lambda tail to the correct length.

Xu J, Hendrix RW, Duda RL.

J Mol Biol. 2014 Mar 6;426(5):1004-18. doi: 10.1016/j.jmb.2013.06.040. Epub 2013 Jul 30.

18.

Cluster J mycobacteriophages: intron splicing in capsid and tail genes.

Pope WH, Jacobs-Sera D, Best AA, Broussard GW, Connerly PL, Dedrick RM, Kremer TA, Offner S, Ogiefo AH, Pizzorno MC, Rockenbach K, Russell DA, Stowe EL, Stukey J, Thibault SA, Conway JF, Hendrix RW, Hatfull GF.

PLoS One. 2013 Jul 9;8(7):e69273. doi: 10.1371/journal.pone.0069273. Print 2013.

19.

A balanced ratio of proteins from gene G and frameshift-extended gene GT is required for phage lambda tail assembly.

Xu J, Hendrix RW, Duda RL.

J Mol Biol. 2013 Sep 23;425(18):3476-87. doi: 10.1016/j.jmb.2013.07.002. Epub 2013 Jul 12.

20.

Structure of the archaeal head-tailed virus HSTV-1 completes the HK97 fold story.

Pietilä MK, Laurinmäki P, Russell DA, Ko CC, Jacobs-Sera D, Hendrix RW, Bamford DH, Butcher SJ.

Proc Natl Acad Sci U S A. 2013 Jun 25;110(26):10604-9. doi: 10.1073/pnas.1303047110. Epub 2013 Jun 3.

21.

Functional domains of the HK97 capsid maturation protease and the mechanisms of protein encapsidation.

Duda RL, Oh B, Hendrix RW.

J Mol Biol. 2013 Aug 9;425(15):2765-81. doi: 10.1016/j.jmb.2013.05.002. Epub 2013 May 17.

22.

Tail tip proteins related to bacteriophage λ gpL coordinate an iron-sulfur cluster.

Tam W, Pell LG, Bona D, Tsai A, Dai XX, Edwards AM, Hendrix RW, Maxwell KL, Davidson AR.

J Mol Biol. 2013 Jul 24;425(14):2450-62. doi: 10.1016/j.jmb.2013.03.032. Epub 2013 Mar 28.

23.

Snapshot of haloarchaeal tailed virus genomes.

Senčilo A, Jacobs-Sera D, Russell DA, Ko CC, Bowman CA, Atanasova NS, Österlund E, Oksanen HM, Bamford DH, Hatfull GF, Roine E, Hendrix RW.

RNA Biol. 2013 May;10(5):803-16. doi: 10.4161/rna.24045. Epub 2013 Mar 7.

24.

Insights into head-tailed viruses infecting extremely halophilic archaea.

Pietilä MK, Laurinmäki P, Russell DA, Ko CC, Jacobs-Sera D, Butcher SJ, Bamford DH, Hendrix RW.

J Virol. 2013 Mar;87(6):3248-60. doi: 10.1128/JVI.03397-12. Epub 2013 Jan 2.

25.

On the nature of mycobacteriophage diversity and host preference.

Jacobs-Sera D, Marinelli LJ, Bowman C, Broussard GW, Guerrero Bustamante C, Boyle MM, Petrova ZO, Dedrick RM, Pope WH; Science Education Alliance Phage Hunters Advancing Genomics And Evolutionary Science Sea-Phages Program, Modlin RL, Hendrix RW, Hatfull GF.

Virology. 2012 Dec 20;434(2):187-201. doi: 10.1016/j.virol.2012.09.026. Epub 2012 Oct 22. Review.

26.

Mycobacteriophage Marvin: a new singleton phage with an unusual genome organization.

Mageeney C, Pope WH, Harrison M, Moran D, Cross T, Jacobs-Sera D, Hendrix RW, Dunbar D, Hatfull GF.

J Virol. 2012 May;86(9):4762-75. doi: 10.1128/JVI.00075-12. Epub 2012 Feb 22.

27.

Bacteriophage HK97 capsid assembly and maturation.

Hendrix RW, Johnson JE.

Adv Exp Med Biol. 2012;726:351-63. doi: 10.1007/978-1-4614-0980-9_15. Review.

PMID:
22297521
28.

Genomic and functional analysis of Vibrio phage SIO-2 reveals novel insights into ecology and evolution of marine siphoviruses.

Baudoux AC, Hendrix RW, Lander GC, Bailly X, Podell S, Paillard C, Johnson JE, Potter CS, Carragher B, Azam F.

Environ Microbiol. 2012 Aug;14(8):2071-86. doi: 10.1111/j.1462-2920.2011.02685.x. Epub 2012 Jan 9.

29.

Genomics of bacterial and archaeal viruses: dynamics within the prokaryotic virosphere.

Krupovic M, Prangishvili D, Hendrix RW, Bamford DH.

Microbiol Mol Biol Rev. 2011 Dec;75(4):610-35. doi: 10.1128/MMBR.00011-11. Review.

30.

Cluster K mycobacteriophages: insights into the evolutionary origins of mycobacteriophage TM4.

Pope WH, Ferreira CM, Jacobs-Sera D, Benjamin RC, Davis AJ, DeJong RJ, Elgin SC, Guilfoile FR, Forsyth MH, Harris AD, Harvey SE, Hughes LE, Hynes PM, Jackson AS, Jalal MD, MacMurray EA, Manley CM, McDonough MJ, Mosier JL, Osterbann LJ, Rabinowitz HS, Rhyan CN, Russell DA, Saha MS, Shaffer CD, Simon SE, Sims EF, Tovar IG, Weisser EG, Wertz JT, Weston-Hafer KA, Williamson KE, Zhang B, Cresawn SG, Jain P, Piuri M, Jacobs WR Jr, Hendrix RW, Hatfull GF.

PLoS One. 2011;6(10):e26750. doi: 10.1371/journal.pone.0026750. Epub 2011 Oct 28.

31.

Bacteriophages and their genomes.

Hatfull GF, Hendrix RW.

Curr Opin Virol. 2011 Oct;1(4):298-303. doi: 10.1016/j.coviro.2011.06.009. Review.

32.

Phamerator: a bioinformatic tool for comparative bacteriophage genomics.

Cresawn SG, Bogel M, Day N, Jacobs-Sera D, Hendrix RW, Hatfull GF.

BMC Bioinformatics. 2011 Oct 12;12:395. doi: 10.1186/1471-2105-12-395.

33.

Raw sewage harbors diverse viral populations.

Cantalupo PG, Calgua B, Zhao G, Hundesa A, Wier AD, Katz JP, Grabe M, Hendrix RW, Girones R, Wang D, Pipas JM.

MBio. 2011 Oct 4;2(5). pii: e00180-11. doi: 10.1128/mBio.00180-11. Print 2011.

34.

Use of MRI images to measure tissue thickness over the ischial tuberosity at different hip flexion.

Makhsous M, Lin F, Cichowski A, Cheng I, Fasanati C, Grant T, Hendrix RW.

Clin Anat. 2011 Jul;24(5):638-45. doi: 10.1002/ca.21119. Epub 2011 Jan 7.

PMID:
21647964
35.

Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution.

Pope WH, Jacobs-Sera D, Russell DA, Peebles CL, Al-Atrache Z, Alcoser TA, Alexander LM, Alfano MB, Alford ST, Amy NE, Anderson MD, Anderson AG, Ang AA, Ares M Jr, Barber AJ, Barker LP, Barrett JM, Barshop WD, Bauerle CM, Bayles IM, Belfield KL, Best AA, Borjon A Jr, Bowman CA, Boyer CA, Bradley KW, Bradley VA, Broadway LN, Budwal K, Busby KN, Campbell IW, Campbell AM, Carey A, Caruso SM, Chew RD, Cockburn CL, Cohen LB, Corajod JM, Cresawn SG, Davis KR, Deng L, Denver DR, Dixon BR, Ekram S, Elgin SC, Engelsen AE, English BE, Erb ML, Estrada C, Filliger LZ, Findley AM, Forbes L, Forsyth MH, Fox TM, Fritz MJ, Garcia R, George ZD, Georges AE, Gissendanner CR, Goff S, Goldstein R, Gordon KC, Green RD, Guerra SL, Guiney-Olsen KR, Guiza BG, Haghighat L, Hagopian GV, Harmon CJ, Harmson JS, Hartzog GA, Harvey SE, He S, He KJ, Healy KE, Higinbotham ER, Hildebrandt EN, Ho JH, Hogan GM, Hohenstein VG, Holz NA, Huang VJ, Hufford EL, Hynes PM, Jackson AS, Jansen EC, Jarvik J, Jasinto PG, Jordan TC, Kasza T, Katelyn MA, Kelsey JS, Kerrigan LA, Khaw D, Kim J, Knutter JZ, Ko CC, Larkin GV, Laroche JR, Latif A, Leuba KD, Leuba SI, Lewis LO, Loesser-Casey KE, Long CA, Lopez AJ, Lowery N, Lu TQ, Mac V, Masters IR, McCloud JJ, McDonough MJ, Medenbach AJ, Menon A, Miller R, Morgan BK, Ng PC, Nguyen E, Nguyen KT, Nguyen ET, Nicholson KM, Parnell LA, Peirce CE, Perz AM, Peterson LJ, Pferdehirt RE, Philip SV, Pogliano K, Pogliano J, Polley T, Puopolo EJ, Rabinowitz HS, Resiss MJ, Rhyan CN, Robinson YM, Rodriguez LL, Rose AC, Rubin JD, Ruby JA, Saha MS, Sandoz JW, Savitskaya J, Schipper DJ, Schnitzler CE, Schott AR, Segal JB, Shaffer CD, Sheldon KE, Shepard EM, Shepardson JW, Shroff MK, Simmons JM, Simms EF, Simpson BM, Sinclair KM, Sjoholm RL, Slette IJ, Spaulding BC, Straub CL, Stukey J, Sughrue T, Tang TY, Tatyana LM, Taylor SB, Taylor BJ, Temple LM, Thompson JV, Tokarz MP, Trapani SE, Troum AP, Tsay J, Tubbs AT, Walton JM, Wang DH, Wang H, Warner JR, Weisser EG, Wendler SC, Weston-Hafer KA, Whelan HM, Williamson KE, Willis AN, Wirtshafter HS, Wong TW, Wu P, Yang Yj, Yee BC, Zaidins DA, Zhang B, Zúniga MY, Hendrix RW, Hatfull GF.

PLoS One. 2011 Jan 27;6(1):e16329. doi: 10.1371/journal.pone.0016329.

36.

The Prohead-I structure of bacteriophage HK97: implications for scaffold-mediated control of particle assembly and maturation.

Huang RK, Khayat R, Lee KK, Gertsman I, Duda RL, Hendrix RW, Johnson JE.

J Mol Biol. 2011 May 6;408(3):541-54. doi: 10.1016/j.jmb.2011.01.016. Epub 2011 Jan 27.

37.

Limitations of imageless computer-assisted navigation for total hip arthroplasty.

Lin F, Lim D, Wixson RL, Milos S, Hendrix RW, Makhsous M.

J Arthroplasty. 2011 Jun;26(4):596-605. doi: 10.1016/j.arth.2010.05.027. Epub 2010 Sep 3.

PMID:
20817389
38.

Comparative genomic analysis of 60 Mycobacteriophage genomes: genome clustering, gene acquisition, and gene size.

Hatfull GF, Jacobs-Sera D, Lawrence JG, Pope WH, Russell DA, Ko CC, Weber RJ, Patel MC, Germane KL, Edgar RH, Hoyte NN, Bowman CA, Tantoco AT, Paladin EC, Myers MS, Smith AL, Grace MS, Pham TT, O'Brien MB, Vogelsberger AM, Hryckowian AJ, Wynalek JL, Donis-Keller H, Bogel MW, Peebles CL, Cresawn SG, Hendrix RW.

J Mol Biol. 2010 Mar 19;397(1):119-43. doi: 10.1016/j.jmb.2010.01.011. Epub 2010 Jan 11.

39.

Mycobacteriophages BPs, Angel and Halo: comparative genomics reveals a novel class of ultra-small mobile genetic elements.

Sampson T, Broussard GW, Marinelli LJ, Jacobs-Sera D, Ray M, Ko CC, Russell D, Hendrix RW, Hatfull GF.

Microbiology. 2009 Sep;155(Pt 9):2962-77. doi: 10.1099/mic.0.030486-0. Epub 2009 Jun 25.

40.

Structure and energetics of encapsidated DNA in bacteriophage HK97 studied by scanning calorimetry and cryo-electron microscopy.

Duda RL, Ross PD, Cheng N, Firek BA, Hendrix RW, Conway JF, Steven AC.

J Mol Biol. 2009 Aug 14;391(2):471-83. doi: 10.1016/j.jmb.2009.06.035. Epub 2009 Jun 18.

41.

The genome of Bacillus subtilis bacteriophage SPO1.

Stewart CR, Casjens SR, Cresawn SG, Houtz JM, Smith AL, Ford ME, Peebles CL, Hatfull GF, Hendrix RW, Huang WM, Pedulla ML.

J Mol Biol. 2009 Apr 24;388(1):48-70. doi: 10.1016/j.jmb.2009.03.009. Epub 2009 Mar 10.

42.

In vivo noninvasive evaluation of abnormal patellar tracking during squatting in patients with patellofemoral pain.

Wilson NA, Press JM, Koh JL, Hendrix RW, Zhang LQ.

J Bone Joint Surg Am. 2009 Mar 1;91(3):558-66. doi: 10.2106/JBJS.G.00572.

43.

Jumbo bacteriophages.

Hendrix RW.

Curr Top Microbiol Immunol. 2009;328:229-40. Review.

PMID:
19216440
44.

An unexpected twist in viral capsid maturation.

Gertsman I, Gan L, Guttman M, Lee K, Speir JA, Duda RL, Hendrix RW, Komives EA, Johnson JE.

Nature. 2009 Apr 2;458(7238):646-50. doi: 10.1038/nature07686. Epub 2009 Feb 8.

45.

Biomechanical effects of sitting with adjustable ischial and lumbar support on occupational low back pain: evaluation of sitting load and back muscle activity.

Makhsous M, Lin F, Bankard J, Hendrix RW, Hepler M, Press J.

BMC Musculoskelet Disord. 2009 Feb 5;10:17. doi: 10.1186/1471-2474-10-17.

46.

Mutational analysis of a conserved glutamic acid required for self-catalyzed cross-linking of bacteriophage HK97 capsids.

Dierkes LE, Peebles CL, Firek BA, Hendrix RW, Duda RL.

J Virol. 2009 Mar;83(5):2088-98. doi: 10.1128/JVI.02000-08. Epub 2008 Dec 17.

47.

Unfolding thermodynamics of the Delta-domain in the prohead I subunit of phage HK97: determination by factor analysis of Raman spectra.

Nemecek D, Overman SA, Hendrix RW, Thomas GJ Jr.

J Mol Biol. 2009 Jan 16;385(2):628-41. doi: 10.1016/j.jmb.2008.10.046. Epub 2008 Nov 1.

48.

Virus capsid expansion driven by the capture of mobile surface loops.

Lee KK, Gan L, Tsuruta H, Moyer C, Conway JF, Duda RL, Hendrix RW, Steven AC, Johnson JE.

Structure. 2008 Oct 8;16(10):1491-502. doi: 10.1016/j.str.2008.06.014.

49.

Comparative genomics of the mycobacteriophages: insights into bacteriophage evolution.

Hatfull GF, Cresawn SG, Hendrix RW.

Res Microbiol. 2008 Jun;159(5):332-9. doi: 10.1016/j.resmic.2008.04.008. Epub 2008 May 7. Review.

50.

Validation of a computer navigation system and a CT method for determination of the orientation of implanted acetabular cup in total hip arthroplasty: a cadaver study.

Lin F, Lim D, Wixson RL, Milos S, Hendrix RW, Makhsous M.

Clin Biomech (Bristol, Avon). 2008 Oct;23(8):1004-11. doi: 10.1016/j.clinbiomech.2008.04.015. Epub 2008 Jun 9.

PMID:
18541352

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