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Items: 15

1.

A deep recurrent neural network discovers complex biological rules to decipher RNA protein-coding potential.

Hill ST, Kuintzle R, Teegarden A, Merrill E 3rd, Danaee P, Hendrix DA.

Nucleic Acids Res. 2018 Sep 19;46(16):8105-8113. doi: 10.1093/nar/gky567.

2.

Transcription Factor CTIP1/ BCL11A Regulates Epidermal Differentiation and Lipid Metabolism During Skin Development.

Li S, Teegarden A, Bauer EM, Choi J, Messaddeq N, Hendrix DA, Ganguli-Indra G, Leid M, Indra AK.

Sci Rep. 2017 Oct 18;7(1):13427. doi: 10.1038/s41598-017-13347-7.

3.

In Vivo Characterization of an AHR-Dependent Long Noncoding RNA Required for Proper Sox9b Expression.

Garcia GR, Goodale BC, Wiley MW, La Du JK, Hendrix DA, Tanguay RL.

Mol Pharmacol. 2017 Jun;91(6):609-619. doi: 10.1124/mol.117.108233. Epub 2017 Apr 6.

4.

Circadian deep sequencing reveals stress-response genes that adopt robust rhythmic expression during aging.

Kuintzle RC, Chow ES, Westby TN, Gvakharia BO, Giebultowicz JM, Hendrix DA.

Nat Commun. 2017 Feb 21;8:14529. doi: 10.1038/ncomms14529.

5.

Long noncoding RNAs and sulforaphane: a target for chemoprevention and suppression of prostate cancer.

Beaver LM, Kuintzle R, Buchanan A, Wiley MW, Glasser ST, Wong CP, Johnson GS, Chang JH, Löhr CV, Williams DE, Dashwood RH, Hendrix DA, Ho E.

J Nutr Biochem. 2017 Apr;42:72-83. doi: 10.1016/j.jnutbio.2017.01.001. Epub 2017 Jan 12.

6.

A DEEP LEARNING APPROACH FOR CANCER DETECTION AND RELEVANT GENE IDENTIFICATION.

Danaee P, Ghaeini R, Hendrix DA.

Pac Symp Biocomput. 2017;22:219-229. doi: 10.1142/9789813207813_0022.

7.

MicroRNA and gene expression changes in unruptured human cerebral aneurysms.

Bekelis K, Kerley-Hamilton JS, Teegarden A, Tomlinson CR, Kuintzle R, Simmons N, Singer RJ, Roberts DW, Kellis M, Hendrix DA.

J Neurosurg. 2016 Dec;125(6):1390-1399. Epub 2016 Feb 26.

8.

Childhood fever: a qualitative study on parents' expectations and experiences during general practice out-of-hours care consultations.

de Bont EG, Loonen N, Hendrix DA, Lepot JM, Dinant GJ, Cals JW.

BMC Fam Pract. 2015 Oct 7;16:131. doi: 10.1186/s12875-015-0348-0.

9.

PRC2 Is Required to Maintain Expression of the Maternal Gtl2-Rian-Mirg Locus by Preventing De Novo DNA Methylation in Mouse Embryonic Stem Cells.

Das PP, Hendrix DA, Apostolou E, Buchner AH, Canver MC, Beyaz S, Ljuboja D, Kuintzle R, Kim W, Karnik R, Shao Z, Xie H, Xu J, De Los Angeles A, Zhang Y, Choe J, Jun DL, Shen X, Gregory RI, Daley GQ, Meissner A, Kellis M, Hochedlinger K, Kim J, Orkin SH.

Cell Rep. 2015 Sep 1;12(9):1456-70. doi: 10.1016/j.celrep.2015.07.053. Epub 2015 Aug 20.

10.

Workload and management of childhood fever at general practice out-of-hours care: an observational cohort study.

de Bont EG, Lepot JM, Hendrix DA, Loonen N, Guldemond-Hecker Y, Dinant GJ, Cals JW.

BMJ Open. 2015 May 19;5(5):e007365. doi: 10.1136/bmjopen-2014-007365.

11.

Computational analysis of noncoding RNAs.

Washietl S, Will S, Hendrix DA, Goff LA, Rinn JL, Berger B, Kellis M.

Wiley Interdiscip Rev RNA. 2012 Nov-Dec;3(6):759-78. doi: 10.1002/wrna.1134. Epub 2012 Sep 18. Review.

12.

The polycomb group mutant esc leads to augmented levels of paused Pol II in the Drosophila embryo.

Chopra VS, Hendrix DA, Core LJ, Tsui C, Lis JT, Levine M.

Mol Cell. 2011 Jun 24;42(6):837-44. doi: 10.1016/j.molcel.2011.05.009.

13.

How the Dorsal gradient works: insights from postgenome technologies.

Hong JW, Hendrix DA, Papatsenko D, Levine MS.

Proc Natl Acad Sci U S A. 2008 Dec 23;105(51):20072-6. doi: 10.1073/pnas.0806476105. Epub 2008 Dec 22. Review.

14.

Shadow enhancers as a source of evolutionary novelty.

Hong JW, Hendrix DA, Levine MS.

Science. 2008 Sep 5;321(5894):1314. doi: 10.1126/science.1160631. No abstract available.

15.

Promoter elements associated with RNA Pol II stalling in the Drosophila embryo.

Hendrix DA, Hong JW, Zeitlinger J, Rokhsar DS, Levine MS.

Proc Natl Acad Sci U S A. 2008 Jun 3;105(22):7762-7. doi: 10.1073/pnas.0802406105. Epub 2008 May 27.

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