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Items: 13

1.

SimpactCyan 1.0: An Open-source Simulator for Individual-Based Models in HIV Epidemiology with R and Python Interfaces.

Liesenborgs J, Hendrickx DM, Kuylen E, Niyukuri D, Hens N, Delva W.

Sci Rep. 2019 Dec 17;9(1):19289. doi: 10.1038/s41598-019-55689-4.

2.

The impact of behavioral interventions on co-infection dynamics: An exploration of the effects of home isolation.

Hendrickx DM, Abrams S, Hens N.

J Theor Biol. 2019 Sep 7;476:5-18. doi: 10.1016/j.jtbi.2019.05.017. Epub 2019 May 27.

3.

Screening for hepatitis C at the emergency department: Should babyboomers also be screened in Belgium?

Bielen R, Kremer C, Koc ÖM, Busschots D, Hendrickx DM, Vanelderen P, Hens N, Nevens F, Robaeys G.

Liver Int. 2019 Apr;39(4):667-675. doi: 10.1111/liv.14016. Epub 2018 Dec 20.

PMID:
30525269
4.

DTNI: a novel toxicogenomics data analysis tool for identifying the molecular mechanisms underlying the adverse effects of toxic compounds.

Hendrickx DM, Souza T, Jennen DGJ, Kleinjans JCS.

Arch Toxicol. 2017 Jun;91(6):2343-2352. doi: 10.1007/s00204-016-1922-5. Epub 2016 Dec 28.

5.

Bayesian Network Inference Enables Unbiased Phenotypic Anchoring of Transcriptomic Responses to Cigarette Smoke in Humans.

Jennen DG, van Leeuwen DM, Hendrickx DM, Gottschalk RW, van Delft JH, Kleinjans JC.

Chem Res Toxicol. 2015 Oct 19;28(10):1936-48. doi: 10.1021/acs.chemrestox.5b00145. Epub 2015 Sep 17.

PMID:
26360787
6.

Distinct genotype-dependent differences in transcriptome responses in humans exposed to environmental carcinogens.

Espín-Pérez A, de Kok TM, Jennen DG, Hendrickx DM, De Coster S, Schoeters G, Baeyens W, van Larebeke N, Kleinjans JC.

Carcinogenesis. 2015 Oct;36(10):1154-61. doi: 10.1093/carcin/bgv111. Epub 2015 Aug 1.

PMID:
26233959
7.

Pattern recognition methods to relate time profiles of gene expression with phenotypic data: a comparative study.

Hendrickx DM, Jennen DG, Briedé JJ, Cavill R, de Kok TM, Kleinjans JC.

Bioinformatics. 2015 Jul 1;31(13):2115-22. doi: 10.1093/bioinformatics/btv108. Epub 2015 Feb 19.

PMID:
25701576
8.

diXa: a data infrastructure for chemical safety assessment.

Hendrickx DM, Aerts HJ, Caiment F, Clark D, Ebbels TM, Evelo CT, Gmuender H, Hebels DG, Herwig R, Hescheler J, Jennen DG, Jetten MJ, Kanterakis S, Keun HC, Matser V, Overington JP, Pilicheva E, Sarkans U, Segura-Lepe MP, Sotiriadou I, Wittenberger T, Wittwehr C, Zanzi A, Kleinjans JC.

Bioinformatics. 2015 May 1;31(9):1505-7. doi: 10.1093/bioinformatics/btu827. Epub 2014 Dec 12.

9.

Workshop report: Identifying opportunities for global integration of toxicogenomics databases, 26-27 June 2013, Research Triangle Park, NC, USA.

Hendrickx DM, Boyles RR, Kleinjans JC, Dearry A.

Arch Toxicol. 2014 Dec;88(12):2323-32. doi: 10.1007/s00204-014-1387-3. Epub 2014 Oct 19.

10.

MetDFBA: incorporating time-resolved metabolomics measurements into dynamic flux balance analysis.

Willemsen AM, Hendrickx DM, Hoefsloot HC, Hendriks MM, Wahl SA, Teusink B, Smilde AK, van Kampen AH.

Mol Biosyst. 2015 Jan;11(1):137-45. doi: 10.1039/c4mb00510d. Epub 2014 Oct 15.

PMID:
25315283
11.

Inferring differences in the distribution of reaction rates across conditions.

Hendrickx DM, Hoefsloot HC, Hendriks MM, Vis DJ, Canelas AB, Teusink B, Smilde AK.

Mol Biosyst. 2012 Sep;8(9):2415-23. Epub 2012 Jul 11.

PMID:
22782002
12.

Global test for metabolic pathway differences between conditions.

Hendrickx DM, Hoefsloot HC, Hendriks MM, Canelas AB, Smilde AK.

Anal Chim Acta. 2012 Mar 16;719:8-15. doi: 10.1016/j.aca.2011.12.051. Epub 2012 Jan 4.

PMID:
22340525
13.

Reverse engineering of metabolic networks, a critical assessment.

Hendrickx DM, Hendriks MM, Eilers PH, Smilde AK, Hoefsloot HC.

Mol Biosyst. 2011 Feb;7(2):511-20. doi: 10.1039/c0mb00083c. Epub 2010 Nov 10. Review.

PMID:
21069230

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