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Items: 24

1.

Draft Genome of the Rice Coral Montipora capitata Obtained from Linked-Read Sequencing.

Helmkampf M, Bellinger MR, Geib SM, Sim SB, Takabayashi M.

Genome Biol Evol. 2019 Jul 1;11(7):2045-2054. doi: 10.1093/gbe/evz135.

2.

Symbiont type and environmental factors affect transcriptome-wide gene expression in the coral Montipora capitata.

Helmkampf M, Bellinger MR, Frazier M, Takabayashi M.

Ecol Evol. 2018 Dec 27;9(1):378-392. doi: 10.1002/ece3.4756. eCollection 2019 Jan.

3.

A High-Quality, Long-Read De Novo Genome Assembly to Aid Conservation of Hawaii's Last Remaining Crow Species.

Sutton JT, Helmkampf M, Steiner CC, Bellinger MR, Korlach J, Hall R, Baybayan P, Muehling J, Gu J, Kingan S, Masuda BM, Ryder OA.

Genes (Basel). 2018 Aug 1;9(8). pii: E393. doi: 10.3390/genes9080393.

4.

Phylogenetic Relationships, Breeding Implications, and Cultivation History of Hawaiian Taro (Colocasia Esculenta) Through Genome-Wide SNP Genotyping.

Helmkampf M, Wolfgruber TK, Bellinger MR, Paudel R, Kantar MB, Miyasaka SC, Kimball HL, Brown A, Veillet A, Read A, Shintaku M.

J Hered. 2018 Mar 16;109(3):272-282. doi: 10.1093/jhered/esx070.

5.

De novo metatranscriptome assembly and coral gene expression profile of Montipora capitata with growth anomaly.

Frazier M, Helmkampf M, Bellinger MR, Geib SM, Takabayashi M.

BMC Genomics. 2017 Sep 11;18(1):710. doi: 10.1186/s12864-017-4090-y.

6.

Draft Genome Sequence of Marine Sponge Symbiont Pseudoalteromonas luteoviolacea IPB1, Isolated from Hilo, Hawaii.

Sakai-Kawada FE, Yakym CJ, Helmkampf M, Hagiwara K, Ip CG, Antonio BJ, Armstrong E, Ulloa WJ, Awaya JD.

Genome Announc. 2016 Sep 22;4(5). pii: e01002-16. doi: 10.1128/genomeA.01002-16.

7.

Gene expression and variation in social aggression by queens of the harvester ant Pogonomyrmex californicus.

Helmkampf M, Mikheyev AS, Kang Y, Fewell J, Gadau J.

Mol Ecol. 2016 Aug;25(15):3716-30. doi: 10.1111/mec.13700. Epub 2016 Jun 30.

PMID:
27178446
8.

How Do Genomes Create Novel Phenotypes? Insights from the Loss of the Worker Caste in Ant Social Parasites.

Smith CR, Helms Cahan S, Kemena C, Brady SG, Yang W, Bornberg-Bauer E, Eriksson T, Gadau J, Helmkampf M, Gotzek D, Okamoto Miyakawa M, Suarez AV, Mikheyev A.

Mol Biol Evol. 2015 Nov;32(11):2919-31. doi: 10.1093/molbev/msv165. Epub 2015 Jul 29.

9.

Evolution of the insect desaturase gene family with an emphasis on social Hymenoptera.

Helmkampf M, Cash E, Gadau J.

Mol Biol Evol. 2015 Feb;32(2):456-71. doi: 10.1093/molbev/msu315. Epub 2014 Nov 24.

10.
11.

New phylogenomic data support the monophyly of Lophophorata and an Ectoproct-Phoronid clade and indicate that Polyzoa and Kryptrochozoa are caused by systematic bias.

Nesnidal MP, Helmkampf M, Meyer A, Witek A, Bruchhaus I, Ebersberger I, Hankeln T, Lieb B, Struck TH, Hausdorf B.

BMC Evol Biol. 2013 Nov 17;13:253. doi: 10.1186/1471-2148-13-253.

12.

Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality.

Simola DF, Wissler L, Donahue G, Waterhouse RM, Helmkampf M, Roux J, Nygaard S, Glastad KM, Hagen DE, Viljakainen L, Reese JT, Hunt BG, Graur D, Elhaik E, Kriventseva EV, Wen J, Parker BJ, Cash E, Privman E, Childers CP, Muñoz-Torres MC, Boomsma JJ, Bornberg-Bauer E, Currie CR, Elsik CG, Suen G, Goodisman MA, Keller L, Liebig J, Rawls A, Reinberg D, Smith CD, Smith CR, Tsutsui N, Wurm Y, Zdobnov EM, Berger SL, Gadau J.

Genome Res. 2013 Aug;23(8):1235-47. doi: 10.1101/gr.155408.113. Epub 2013 May 1.

13.

Agent of whirling disease meets orphan worm: phylogenomic analyses firmly place Myxozoa in Cnidaria.

Nesnidal MP, Helmkampf M, Bruchhaus I, El-Matbouli M, Hausdorf B.

PLoS One. 2013;8(1):e54576. doi: 10.1371/journal.pone.0054576. Epub 2013 Jan 30.

14.

Mechanisms and dynamics of orphan gene emergence in insect genomes.

Wissler L, Gadau J, Simola DF, Helmkampf M, Bornberg-Bauer E.

Genome Biol Evol. 2013;5(2):439-55. doi: 10.1093/gbe/evt009.

15.
16.

The genomic impact of 100 million years of social evolution in seven ant species.

Gadau J, Helmkampf M, Nygaard S, Roux J, Simola DF, Smith CR, Suen G, Wurm Y, Smith CD.

Trends Genet. 2012 Jan;28(1):14-21. doi: 10.1016/j.tig.2011.08.005. Epub 2011 Oct 5. Review.

17.

The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle.

Suen G, Teiling C, Li L, Holt C, Abouheif E, Bornberg-Bauer E, Bouffard P, Caldera EJ, Cash E, Cavanaugh A, Denas O, Elhaik E, Favé MJ, Gadau J, Gibson JD, Graur D, Grubbs KJ, Hagen DE, Harkins TT, Helmkampf M, Hu H, Johnson BR, Kim J, Marsh SE, Moeller JA, Muñoz-Torres MC, Murphy MC, Naughton MC, Nigam S, Overson R, Rajakumar R, Reese JT, Scott JJ, Smith CR, Tao S, Tsutsui ND, Viljakainen L, Wissler L, Yandell MD, Zimmer F, Taylor J, Slater SC, Clifton SW, Warren WC, Elsik CG, Smith CD, Weinstock GM, Gerardo NM, Currie CR.

PLoS Genet. 2011 Feb 10;7(2):e1002007. doi: 10.1371/journal.pgen.1002007.

18.

Draft genome of the red harvester ant Pogonomyrmex barbatus.

Smith CR, Smith CD, Robertson HM, Helmkampf M, Zimin A, Yandell M, Holt C, Hu H, Abouheif E, Benton R, Cash E, Croset V, Currie CR, Elhaik E, Elsik CG, Favé MJ, Fernandes V, Gibson JD, Graur D, Gronenberg W, Grubbs KJ, Hagen DE, Viniegra AS, Johnson BR, Johnson RM, Khila A, Kim JW, Mathis KA, Munoz-Torres MC, Murphy MC, Mustard JA, Nakamura R, Niehuis O, Nigam S, Overson RP, Placek JE, Rajakumar R, Reese JT, Suen G, Tao S, Torres CW, Tsutsui ND, Viljakainen L, Wolschin F, Gadau J.

Proc Natl Acad Sci U S A. 2011 Apr 5;108(14):5667-72. doi: 10.1073/pnas.1007901108. Epub 2011 Jan 31.

19.

Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile).

Smith CD, Zimin A, Holt C, Abouheif E, Benton R, Cash E, Croset V, Currie CR, Elhaik E, Elsik CG, Fave MJ, Fernandes V, Gadau J, Gibson JD, Graur D, Grubbs KJ, Hagen DE, Helmkampf M, Holley JA, Hu H, Viniegra AS, Johnson BR, Johnson RM, Khila A, Kim JW, Laird J, Mathis KA, Moeller JA, Muñoz-Torres MC, Murphy MC, Nakamura R, Nigam S, Overson RP, Placek JE, Rajakumar R, Reese JT, Robertson HM, Smith CR, Suarez AV, Suen G, Suhr EL, Tao S, Torres CW, van Wilgenburg E, Viljakainen L, Walden KK, Wild AL, Yandell M, Yorke JA, Tsutsui ND.

Proc Natl Acad Sci U S A. 2011 Apr 5;108(14):5673-8. doi: 10.1073/pnas.1008617108. Epub 2011 Jan 31.

20.

Compositional heterogeneity and phylogenomic inference of metazoan relationships.

Nesnidal MP, Helmkampf M, Bruchhaus I, Hausdorf B.

Mol Biol Evol. 2010 Sep;27(9):2095-104. doi: 10.1093/molbev/msq097. Epub 2010 Apr 9.

PMID:
20382658
21.

Phylogenetic relationships within the lophophorate lineages (Ectoprocta, Brachiopoda and Phoronida).

Hausdorf B, Helmkampf M, Nesnidal MP, Bruchhaus I.

Mol Phylogenet Evol. 2010 Jun;55(3):1121-7. doi: 10.1016/j.ympev.2009.12.022. Epub 2010 Jan 4.

PMID:
20045074
22.

Phylogenomic analyses of lophophorates (brachiopods, phoronids and bryozoans) confirm the Lophotrochozoa concept.

Helmkampf M, Bruchhaus I, Hausdorf B.

Proc Biol Sci. 2008 Aug 22;275(1645):1927-33. doi: 10.1098/rspb.2008.0372.

23.

Multigene analysis of lophophorate and chaetognath phylogenetic relationships.

Helmkampf M, Bruchhaus I, Hausdorf B.

Mol Phylogenet Evol. 2008 Jan;46(1):206-14. Epub 2007 Sep 12.

PMID:
17937996
24.

Spiralian phylogenomics supports the resurrection of Bryozoa comprising Ectoprocta and Entoprocta.

Hausdorf B, Helmkampf M, Meyer A, Witek A, Herlyn H, Bruchhaus I, Hankeln T, Struck TH, Lieb B.

Mol Biol Evol. 2007 Dec;24(12):2723-9. Epub 2007 Oct 5.

PMID:
17921486

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