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Items: 28

1.

Combining Molecular Observations and Microbial Ecosystem Modeling: A Practical Guide.

Hellweger FL.

Ann Rev Mar Sci. 2019 Jun 21. doi: 10.1146/annurev-marine-010419-010829. [Epub ahead of print]

PMID:
31226029
2.

Editorial: The Individual Microbe: Single-Cell Analysis and Agent-Based Modelling.

Leveau JHJ, Hellweger FL, Kreft JU, Prats C, Zhang W.

Front Microbiol. 2018 Nov 21;9:2825. doi: 10.3389/fmicb.2018.02825. eCollection 2018. No abstract available.

3.

Heterotrophic substrate specificity in the aquatic environment: The role of microscale patchiness investigated using modelling.

Hellweger FL.

Environ Microbiol. 2018 Oct;20(10):3825-3835. doi: 10.1111/1462-2920.14397. Epub 2018 Oct 5.

PMID:
30175444
4.

Carbon limitation drives GC content evolution of a marine bacterium in an individual-based genome-scale model.

Hellweger FL, Huang Y, Luo H.

ISME J. 2018 May;12(5):1180-1187. doi: 10.1038/s41396-017-0023-7. Epub 2018 Jan 12.

5.

From Genes to Ecosystems in Microbiology: Modeling Approaches and the Importance of Individuality.

Kreft JU, Plugge CM, Prats C, Leveau JHJ, Zhang W, Hellweger FL.

Front Microbiol. 2017 Nov 27;8:2299. doi: 10.3389/fmicb.2017.02299. eCollection 2017. Review.

6.

Community Biological Ammonium Demand: A Conceptual Model for Cyanobacteria Blooms in Eutrophic Lakes.

Gardner WS, Newell SE, McCarthy MJ, Hoffman DK, Lu K, Lavrentyev PJ, Hellweger FL, Wilhelm SW, Liu Z, Bruesewitz DA, Paerl HW.

Environ Sci Technol. 2017 Jul 18;51(14):7785-7793. doi: 10.1021/acs.est.6b06296. Epub 2017 Jul 7.

PMID:
28648051
7.

Neutral Evolution and Dispersal Limitation Produce Biogeographic Patterns in Microcystis aeruginosa Populations of Lake Systems.

Shirani S, Hellweger FL.

Microb Ecol. 2017 Aug;74(2):416-426. doi: 10.1007/s00248-017-0963-5. Epub 2017 Mar 16.

PMID:
28303312
8.

The Role of Ocean Currents in the Temperature Selection of Plankton: Insights from an Individual-Based Model.

Hellweger FL, van Sebille E, Calfee BC, Chandler JW, Zinser ER, Swan BK, Fredrick ND.

PLoS One. 2016 Dec 1;11(12):e0167010. doi: 10.1371/journal.pone.0167010. eCollection 2016.

9.

Advancing microbial sciences by individual-based modelling.

Hellweger FL, Clegg RJ, Clark JR, Plugge CM, Kreft JU.

Nat Rev Microbiol. 2016 Jul;14(7):461-71. doi: 10.1038/nrmicro.2016.62. Epub 2016 Jun 6. Review.

PMID:
27265769
10.

Dynamic, mechanistic, molecular-level modelling of cyanobacteria: Anabaena and nitrogen interaction.

Hellweger FL, Fredrick ND, McCarthy MJ, Gardner WS, Wilhelm SW, Paerl HW.

Environ Microbiol. 2016 Sep;18(8):2721-31. doi: 10.1111/1462-2920.13299. Epub 2016 Apr 28.

PMID:
27059435
11.

100 Years since Streeter and Phelps: It Is Time To Update the Biology in Our Water Quality Models.

Hellweger FL.

Environ Sci Technol. 2015 Jun 2;49(11):6372-3. doi: 10.1021/acs.est.5b02130. Epub 2015 May 20. No abstract available.

PMID:
25993408
12.

Biogeographic patterns in ocean microbes emerge in a neutral agent-based model.

Hellweger FL, van Sebille E, Fredrick ND.

Science. 2014 Sep 12;345(6202):1346-9. doi: 10.1126/science.1254421.

13.

Accounting for nitrogen fixation in simple models of lake nitrogen loading/export.

Ruan X, Schellenger F, Hellweger FL.

Environ Sci Technol. 2014 May 20;48(10):5667-73. doi: 10.1021/es405707n. Epub 2014 May 2.

PMID:
24754787
14.

Age-correlated stress resistance improves fitness of yeast: support from agent-based simulations.

Hellweger FL, Fredrick ND, Berges JA.

BMC Syst Biol. 2014 Feb 15;8:18. doi: 10.1186/1752-0509-8-18.

15.

Mighty small: Observing and modeling individual microbes becomes big science.

Kreft JU, Plugge CM, Grimm V, Prats C, Leveau JH, Banitz T, Baines S, Clark J, Ros A, Klapper I, Topping CJ, Field AJ, Schuler A, Litchman E, Hellweger FL.

Proc Natl Acad Sci U S A. 2013 Nov 5;110(45):18027-8. doi: 10.1073/pnas.1317472110. No abstract available.

16.

Use of agent-based modeling to explore the mechanisms of intracellular phosphorus heterogeneity in cultured phytoplankton.

Fredrick ND, Berges JA, Twining BS, Nuñez-Milland D, Hellweger FL.

Appl Environ Microbiol. 2013 Jul;79(14):4359-68. doi: 10.1128/AEM.00487-13. Epub 2013 May 10.

17.

Escherichia coli adapts to tetracycline resistance plasmid (pBR322) by mutating endogenous potassium transport: in silico hypothesis testing.

Hellweger FL.

FEMS Microbiol Ecol. 2013 Mar;83(3):622-31. doi: 10.1111/1574-6941.12019. Epub 2012 Nov 6.

18.

Heterogeneity of intracellular polymer storage states in enhanced biological phosphorus removal (EBPR)--observation and modeling.

Bucci V, Majed N, Hellweger FL, Gu AZ.

Environ Sci Technol. 2012 Mar 20;46(6):3244-52. doi: 10.1021/es204052p. Epub 2012 Mar 6.

PMID:
22360302
19.

Is the whole the sum of its parts? Agent-based modelling of wastewater treatment systems.

Schuler AJ, Majed N, Bucci V, Hellweger FL, Tu Y, Gu AZ.

Water Sci Technol. 2011;63(8):1590-8.

PMID:
21866756
20.

A simple model of tetracycline antibiotic resistance in the aquatic environment (with application to the Poudre River).

Hellweger FL, Ruan X, Sanchez S.

Int J Environ Res Public Health. 2011 Feb;8(2):480-97. doi: 10.3390/ijerph8020480. Epub 2011 Feb 15.

21.

Anatomy of an urban waterbody: a case study of Boston's Muddy River.

Mathew M, Yao Y, Cao Y, Shodhan K, Ghosh I, Bucci V, Leitao C, Njoka D, Wei I, Hellweger FL.

Environ Pollut. 2011 Aug-Sep;159(8-9):1996-2002. doi: 10.1016/j.envpol.2011.02.018. Epub 2011 Mar 10.

PMID:
21396758
22.

Carrying photosynthesis genes increases ecological fitness of cyanophage in silico.

Hellweger FL.

Environ Microbiol. 2009 Jun;11(6):1386-94. doi: 10.1111/j.1462-2920.2009.01866.x. Epub 2009 Jan 23.

PMID:
19175665
23.

Individual-based modeling of phytoplankton: evaluating approaches for applying the cell quota model.

Hellweger FL, Kianirad E.

J Theor Biol. 2007 Dec 7;249(3):554-65. Epub 2007 Aug 25.

PMID:
17900626
24.

Ensemble modeling of E. coli in the Charles River, Boston, Massachusetts, USA.

Hellweger FL.

Water Sci Technol. 2007;56(6):39-46.

PMID:
17898442
25.

Accounting for intrapopulation variability in biogeochemical models using agent-based methods.

Hellweger FL, Kianirad E.

Environ Sci Technol. 2007 Apr 15;41(8):2855-60.

PMID:
17533849
26.

Mapping turbidity in the Charles River, Boston using a high-resolution satellite.

Hellweger FL, Miller W, Oshodi KS.

Environ Monit Assess. 2007 Sep;132(1-3):311-20. Epub 2006 Dec 14.

PMID:
17171243
27.

Validation of the narcosis target lipid model for petroleum products: gasoline as a case study.

McGrath JA, Parkerton TF, Hellweger FL, Di Toro DM.

Environ Toxicol Chem. 2005 Sep;24(9):2382-94.

PMID:
16193769
28.

Modeling the effect of algal dynamics on arsenic speciation in Lake Biwa.

Hellweger FL, Lall U.

Environ Sci Technol. 2004 Dec 15;38(24):6716-23.

PMID:
15669332

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