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Mating-System Evolution: All Roads Lead to Selfing.

Sun S, Lin X, Coelho MA, Heitman J.

Curr Biol. 2019 Aug 5;29(15):R743-R746. doi: 10.1016/j.cub.2019.06.073.


Epigenetic mechanisms of drug resistance in fungi.

Chang Z, Yadav V, Lee SC, Heitman J.

Fungal Genet Biol. 2019 Jul 17;132:103253. doi: 10.1016/j.fgb.2019.103253. [Epub ahead of print] Review.


Potential of Membranes Surrounding the Fetus as Immunoprotective Cell-Carriers for Allogeneic Transplantations.

Togarrati PP, Dinglasan N, Yee E, Heitman JW, Jackman RP, Geisberg M, Norris PJ, Bárcena A, Muench MO.

Transplant Direct. 2019 May 29;5(6):e460. doi: 10.1097/TXD.0000000000000901. eCollection 2019 Jun.


Advancing Functional Genetics Through Agrobacterium-Mediated Insertional Mutagenesis and CRISPR/Cas9 in the Commensal and Pathogenic Yeast Malassezia.

Ianiri G, Dagotto G, Sun S, Heitman J.

Genetics. 2019 Aug;212(4):1163-1179. doi: 10.1534/genetics.119.302329. Epub 2019 Jun 26.


Genetic and Genomic Analyses Reveal Boundaries between Species Closely Related to Cryptococcus Pathogens.

Passer AR, Coelho MA, Billmyre RB, Nowrousian M, Mittelbach M, Yurkov AM, Averette AF, Cuomo CA, Sun S, Heitman J.

MBio. 2019 Jun 11;10(3). pii: e00764-19. doi: 10.1128/mBio.00764-19.


Gastrointestinal microbiota alteration induced by Mucor circinelloides in a murine model.

Mueller KD, Zhang H, Serrano CR, Billmyre RB, Huh EY, Wiemann P, Keller NP, Wang Y, Heitman J, Lee SC.

J Microbiol. 2019 Jun;57(6):509-520. doi: 10.1007/s12275-019-8682-x. Epub 2019 May 27.


Nutrient and Stress Sensing in Pathogenic Yeasts.

Rutherford JC, Bahn YS, van den Berg B, Heitman J, Xue C.

Front Microbiol. 2019 Mar 8;10:442. doi: 10.3389/fmicb.2019.00442. eCollection 2019. Review.


Influence of blood storage age on immune and coagulation parameters in critically ill transfused patients.

Norris PJ, Schechtman K, Inglis HC, Adelman A, Heitman JW, Vilardi R, Shah A, Roubinian NH, Danesh A, Guiltinan AM, Keating SM, Lacroix J, Cohen MJ, Spinella PC.

Transfusion. 2019 Apr;59(4):1223-1232. doi: 10.1111/trf.15250. Epub 2019 Mar 18.


Fungi in the Marine Environment: Open Questions and Unsolved Problems.

Amend A, Burgaud G, Cunliffe M, Edgcomb VP, Ettinger CL, Gutiérrez MH, Heitman J, Hom EFY, Ianiri G, Jones AC, Kagami M, Picard KT, Quandt CA, Raghukumar S, Riquelme M, Stajich J, Vargas-Muñiz J, Walker AK, Yarden O, Gladfelter AS.

MBio. 2019 Mar 5;10(2). pii: e01189-18. doi: 10.1128/mBio.01189-18. Review.


Effects of blood storage age on immune, coagulation, and nitric oxide parameters in transfused patients undergoing cardiac surgery.

Spinella PC, Sniecinski RM, Trachtenberg F, Inglis HC, Ranganathan G, Heitman JW, Szlam F, Danesh A, Stone M, Keating SM, Levy JH, Assmann SF, Steiner ME, Doctor A, Norris PJ.

Transfusion. 2019 Apr;59(4):1209-1222. doi: 10.1111/trf.15228. Epub 2019 Mar 5.


Cryptococcus deuterogattii VGIIa Infection Associated with Travel to the Pacific Northwest Outbreak Region in an Anti-Granulocyte-Macrophage Colony-Stimulating Factor Autoantibody-Positive Patient in the United States.

Applen Clancey S, Ciccone EJ, Coelho MA, Davis J, Ding L, Betancourt R, Glaubiger S, Lee Y, Holland SM, Gilligan P, Sung J, Heitman J.

MBio. 2019 Feb 12;10(1). pii: e02733-18. doi: 10.1128/mBio.02733-18.


Broad antifungal resistance mediated by RNAi-dependent epimutation in the basal human fungal pathogen Mucor circinelloides.

Chang Z, Billmyre RB, Lee SC, Heitman J.

PLoS Genet. 2019 Feb 11;15(2):e1007957. doi: 10.1371/journal.pgen.1007957. eCollection 2019 Feb.


Allogeneic major histocompatibility complex antigens are necessary and sufficient for partial tolerance induced by transfusion of pathogen reduced platelets in mice.

Tran JQ, Muench MO, Heitman JW, Jackman RP.

Vox Sang. 2019 Apr;114(3):207-215. doi: 10.1111/vox.12756. Epub 2019 Feb 7.


Mucor circinelloides Thrives inside the Phagosome through an Atf-Mediated Germination Pathway.

Pérez-Arques C, Navarro-Mendoza MI, Murcia L, Lax C, Martínez-García P, Heitman J, Nicolás FE, Garre V.

MBio. 2019 Feb 5;10(1). pii: e02765-18. doi: 10.1128/mBio.02765-18.


Cryptococcus neoformans Mating and Genetic Crosses.

Sun S, Priest SJ, Heitman J.

Curr Protoc Microbiol. 2019 Jun;53(1):e75. doi: 10.1002/cpmc.75. Epub 2019 Jan 20.


Mating type (MAT) locus and possible sexuality of the opportunistic pathogen Exophiala dermatitidis.

Metin B, Döğen A, Yıldırım E, de Hoog GS, Heitman J, Ilkit M.

Fungal Genet Biol. 2019 Mar;124:29-38. doi: 10.1016/j.fgb.2018.12.011. Epub 2019 Jan 3.


In Vitro and In Vivo Assessment of FK506 Analogs as Novel Antifungal Drug Candidates.

Lee Y, Lee KT, Lee SJ, Beom JY, Hwangbo A, Jung JA, Song MC, Yoo YJ, Kang SH, Averette AF, Heitman J, Yoon YJ, Cheong E, Bahn YS.

Antimicrob Agents Chemother. 2018 Oct 24;62(11). pii: e01627-18. doi: 10.1128/AAC.01627-18. Print 2018 Nov.


An Atlas of Genetic Variation Linking Pathogen-Induced Cellular Traits to Human Disease.

Wang L, Pittman KJ, Barker JR, Salinas RE, Stanaway IB, Williams GD, Carroll RJ, Balmat T, Ingham A, Gopalakrishnan AM, Gibbs KD, Antonia AL; eMERGE Network, Heitman J, Lee SC, Jarvik GP, Denny JC, Horner SM, DeLong MR, Valdivia RH, Crosslin DR, Ko DC.

Cell Host Microbe. 2018 Aug 8;24(2):308-323.e6. doi: 10.1016/j.chom.2018.07.007.


Granulocyte-Derived Extracellular Vesicles Activate Monocytes and Are Associated With Mortality in Intensive Care Unit Patients.

Danesh A, Inglis HC, Abdel-Mohsen M, Deng X, Adelman A, Schechtman KB, Heitman JW, Vilardi R, Shah A, Keating SM, Cohen MJ, Jacobs ES, Pillai SK, Lacroix J, Spinella PC, Norris PJ.

Front Immunol. 2018 May 8;9:956. doi: 10.3389/fimmu.2018.00956. eCollection 2018.


Evolutionarily Conserved and Divergent Roles of Unfolded Protein Response (UPR) in the Pathogenic Cryptococcus Species Complex.

Jung KW, Lee KT, Averette AF, Hoy MJ, Everitt J, Heitman J, Bahn YS.

Sci Rep. 2018 May 25;8(1):8132. doi: 10.1038/s41598-018-26405-5.


Outbreak of Invasive Wound Mucormycosis in a Burn Unit Due to Multiple Strains of Mucor circinelloides f. circinelloides Resolved by Whole-Genome Sequencing.

Garcia-Hermoso D, Criscuolo A, Lee SC, Legrand M, Chaouat M, Denis B, Lafaurie M, Rouveau M, Soler C, Schaal JV, Mimoun M, Mebazaa A, Heitman J, Dromer F, Brisse S, Bretagne S, Alanio A.

MBio. 2018 Apr 24;9(2). pii: e00573-18. doi: 10.1128/mBio.00573-18.


The Skin Commensal Yeast Malassezia globosa Thwarts Bacterial Biofilms to Benefit the Host.

Ianiri G, Heitman J, Scheynius A.

J Invest Dermatol. 2018 May;138(5):1026-1029. doi: 10.1016/j.jid.2018.01.008.


Phylogenetic and Phylogenomic Definition of Rhizopus Species.

Gryganskyi AP, Golan J, Dolatabadi S, Mondo S, Robb S, Idnurm A, Muszewska A, Steczkiewicz K, Masonjones S, Liao HL, Gajdeczka MT, Anike F, Vuek A, Anishchenko IM, Voigt K, de Hoog GS, Smith ME, Heitman J, Vilgalys R, Stajich JE.

G3 (Bethesda). 2018 May 31;8(6):2007-2018. doi: 10.1534/g3.118.200235. Erratum in: G3 (Bethesda). 2019 Aug 8;9(8):2789.


A High-Resolution Map of Meiotic Recombination in Cryptococcus deneoformans Demonstrates Decreased Recombination in Unisexual Reproduction.

Roth C, Sun S, Billmyre RB, Heitman J, Magwene PM.

Genetics. 2018 Jun;209(2):567-578. doi: 10.1534/genetics.118.300996. Epub 2018 Apr 6.


Pearls collections: What we can learn about infectious disease and cancer.

Knoll LJ, Hogan DA, Leong JM, Heitman J, Condit RC.

PLoS Pathog. 2018 Mar 29;14(3):e1006915. doi: 10.1371/journal.ppat.1006915. eCollection 2018 Mar. No abstract available.


RNAi is a critical determinant of centromere evolution in closely related fungi.

Yadav V, Sun S, Billmyre RB, Thimmappa BC, Shea T, Lintner R, Bakkeren G, Cuomo CA, Heitman J, Sanyal K.

Proc Natl Acad Sci U S A. 2018 Mar 20;115(12):3108-3113. doi: 10.1073/pnas.1713725115. Epub 2018 Mar 5.


Whole-Genome Analysis Illustrates Global Clonal Population Structure of the Ubiquitous Dermatophyte Pathogen Trichophyton rubrum.

Persinoti GF, Martinez DA, Li W, Döğen A, Billmyre RB, Averette A, Goldberg JM, Shea T, Young S, Zeng Q, Oliver BG, Barton R, Metin B, Hilmioğlu-Polat S, Ilkit M, Gräser Y, Martinez-Rossi NM, White TC, Heitman J, Cuomo CA.

Genetics. 2018 Apr;208(4):1657-1669. doi: 10.1534/genetics.117.300573. Epub 2018 Feb 21.


Incapacitated Surrogates: A New and Increasing Dilemma in Hospital Care.

Smith KL, Fedel P, Heitman J.

J Clin Ethics. 2017 Winter;28(4):279-289.


Had1 Is Required for Cell Wall Integrity and Fungal Virulence in Cryptococcus neoformans.

Jung WH, Son YE, Oh SH, Fu C, Kim HS, Kwak JH, Cardenas ME, Heitman J, Park HS.

G3 (Bethesda). 2018 Feb 2;8(2):643-652. doi: 10.1534/g3.117.300444.


Dissecting the Roles of the Calcineurin Pathway in Unisexual Reproduction, Stress Responses, and Virulence in Cryptococcus deneoformans.

Fu C, Donadio N, Cardenas ME, Heitman J.

Genetics. 2018 Feb;208(2):639-653. doi: 10.1534/genetics.117.300422. Epub 2017 Dec 12.


Erratum for Ianiri et al., "FKBP12-Dependent Inhibition of Calcineurin Mediates Immunosuppressive Antifungal Drug Action in Malassezia".

Ianiri G, Applen Clancey S, Lee SC, Heitman J.

MBio. 2017 Dec 5;8(6). pii: e02055-17. doi: 10.1128/mBio.02055-17. No abstract available.


PRM1 and KAR5 function in cell-cell fusion and karyogamy to drive distinct bisexual and unisexual cycles in the Cryptococcus pathogenic species complex.

Fu C, Heitman J.

PLoS Genet. 2017 Nov 27;13(11):e1007113. doi: 10.1371/journal.pgen.1007113. eCollection 2017 Nov.


FKBP12-Dependent Inhibition of Calcineurin Mediates Immunosuppressive Antifungal Drug Action in Malassezia.

Ianiri G, Applen Clancey S, Lee SC, Heitman J.

MBio. 2017 Oct 24;8(5). pii: e01752-17. doi: 10.1128/mBio.01752-17. Erratum in: MBio. 2017 Dec 5;8(6):.


Natural mismatch repair mutations mediate phenotypic diversity and drug resistance in Cryptococcus deuterogattii.

Billmyre RB, Clancey SA, Heitman J.

Elife. 2017 Sep 26;6. pii: e28802. doi: 10.7554/eLife.28802.


Genetic and epigenetic engines of diversity in pathogenic microbes.

Billmyre RB, Heitman J.

PLoS Pathog. 2017 Sep 14;13(9):e1006468. doi: 10.1371/journal.ppat.1006468. eCollection 2017 Sep. Review. No abstract available.


The effect of HIV infection and HCV viremia on inflammatory mediators and hepatic injury-The Women's Interagency HIV Study.

Keating SM, Dodge JL, Norris PJ, Heitman J, Gange SJ, French AL, Glesby MJ, Edlin BR, Latham PS, Villacres MC, Greenblatt RM, Peters MG; Women’s Interagency HIV Study.

PLoS One. 2017 Sep 13;12(9):e0181004. doi: 10.1371/journal.pone.0181004. eCollection 2017.


Eukaryotic Sexual Reproduction Evoked "with a Little Help from My Friends".

Umen J, Goodenough U, Heitman J.

Cell. 2017 Sep 7;170(6):1059-1061. doi: 10.1016/j.cell.2017.08.038.


A multi-year study of tillage and amendment effects on compacted soils.

Mohammadshirazi F, McLaughlin RA, Heitman JL, Brown VK.

J Environ Manage. 2017 Dec 1;203(Pt 1):533-541. doi: 10.1016/j.jenvman.2017.07.031. Epub 2017 Aug 30.


Fungal genome and mating system transitions facilitated by chromosomal translocations involving intercentromeric recombination.

Sun S, Yadav V, Billmyre RB, Cuomo CA, Nowrousian M, Wang L, Souciet JL, Boekhout T, Porcel B, Wincker P, Granek JA, Sanyal K, Heitman J.

PLoS Biol. 2017 Aug 11;15(8):e2002527. doi: 10.1371/journal.pbio.2002527. eCollection 2017 Aug.


MTL genotypes, phenotypic switching, and susceptibility profiles of Candida parapsilosis species group compared to Lodderomyces elongisporus.

Döğen A, Metin B, Ilkit M, de Hoog GS, Heitman J.

PLoS One. 2017 Aug 3;12(8):e0182653. doi: 10.1371/journal.pone.0182653. eCollection 2017.


Dynamics of parasitophorous vacuoles formed by the microsporidian pathogen Encephalitozoon cuniculi.

Lee SC, Heitman J.

Fungal Genet Biol. 2017 Oct;107:20-23. doi: 10.1016/j.fgb.2017.07.006. Epub 2017 Jul 25.


Tracing Genetic Exchange and Biogeography of Cryptococcus neoformans var. grubii at the Global Population Level.

Rhodes J, Desjardins CA, Sykes SM, Beale MA, Vanhove M, Sakthikumar S, Chen Y, Gujja S, Saif S, Chowdhary A, Lawson DJ, Ponzio V, Colombo AL, Meyer W, Engelthaler DM, Hagen F, Illnait-Zaragozi MT, Alanio A, Vreulink JM, Heitman J, Perfect JR, Litvintseva AP, Bicanic T, Harrison TS, Fisher MC, Cuomo CA.

Genetics. 2017 Sep;207(1):327-346. doi: 10.1534/genetics.117.203836. Epub 2017 Jul 5.


Population genomics and the evolution of virulence in the fungal pathogen Cryptococcus neoformans.

Desjardins CA, Giamberardino C, Sykes SM, Yu CH, Tenor JL, Chen Y, Yang T, Jones AM, Sun S, Haverkamp MR, Heitman J, Litvintseva AP, Perfect JR, Cuomo CA.

Genome Res. 2017 Jul;27(7):1207-1219. doi: 10.1101/gr.218727.116.


Serum from dengue virus-infected patients with and without plasma leakage differentially affects endothelial cells barrier function in vitro.

Tramontini Gomes de Sousa Cardozo F, Baimukanova G, Lanteri MC, Keating SM, Moraes Ferreira F, Heitman J, Pannuti CS, Pati S, Romano CM, Cerdeira Sabino E.

PLoS One. 2017 Jun 6;12(6):e0178820. doi: 10.1371/journal.pone.0178820. eCollection 2017.


Construction of a Recyclable Genetic Marker and Serial Gene Deletions in the Human Pathogenic Mucorales Mucor circinelloides.

Garcia A, Adedoyin G, Heitman J, Lee SC.

G3 (Bethesda). 2017 Jul 5;7(7):2047-2054. doi: 10.1534/g3.117.041095.


Elucidation of the calcineurin-Crz1 stress response transcriptional network in the human fungal pathogen Cryptococcus neoformans.

Chow EW, Clancey SA, Billmyre RB, Averette AF, Granek JA, Mieczkowski P, Cardenas ME, Heitman J.

PLoS Genet. 2017 Apr 4;13(4):e1006667. doi: 10.1371/journal.pgen.1006667. eCollection 2017 Apr.


A non-canonical RNA degradation pathway suppresses RNAi-dependent epimutations in the human fungal pathogen Mucor circinelloides.

Calo S, Nicolás FE, Lee SC, Vila A, Cervantes M, Torres-Martinez S, Ruiz-Vazquez RM, Cardenas ME, Heitman J.

PLoS Genet. 2017 Mar 24;13(3):e1006686. doi: 10.1371/journal.pgen.1006686. eCollection 2017 Mar.


Plants promote mating and dispersal of the human pathogenic fungus Cryptococcus.

Springer DJ, Mohan R, Heitman J.

PLoS One. 2017 Feb 17;12(2):e0171695. doi: 10.1371/journal.pone.0171695. eCollection 2017.


Proteogenomics produces comprehensive and highly accurate protein-coding gene annotation in a complete genome assembly of Malassezia sympodialis.

Zhu Y, Engström PG, Tellgren-Roth C, Baudo CD, Kennell JC, Sun S, Billmyre RB, Schröder MS, Andersson A, Holm T, Sigurgeirsson B, Wu G, Sankaranarayanan SR, Siddharthan R, Sanyal K, Lundeberg J, Nystedt B, Boekhout T, Dawson TL Jr, Heitman J, Scheynius A, Lehtiö J.

Nucleic Acids Res. 2017 Mar 17;45(5):2629-2643. doi: 10.1093/nar/gkx006.


Cytokines Elevated in HIV Elite Controllers Reduce HIV Replication In Vitro and Modulate HIV Restriction Factor Expression.

Jacobs ES, Keating SM, Abdel-Mohsen M, Gibb SL, Heitman JW, Inglis HC, Martin JN, Zhang J, Kaidarova Z, Deng X, Wu S, Anastos K, Crystal H, Villacres MC, Young M, Greenblatt RM, Landay AL, Gange SJ, Deeks SG, Golub ET, Pillai SK, Norris PJ.

J Virol. 2017 Feb 28;91(6). pii: e02051-16. doi: 10.1128/JVI.02051-16. Print 2017 Mar 15.

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