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Items: 24

1.

Expansion of Thaumarchaeota habitat range is correlated with horizontal transfer of ATPase operons.

Wang B, Qin W, Ren Y, Zhou X, Jung MY, Han P, Eloe-Fadrosh EA, Li M, Zheng Y, Lu L, Yan X, Ji J, Liu Y, Liu L, Heiner C, Hall R, Martens-Habbena W, Herbold CW, Rhee SK, Bartlett DH, Huang L, Ingalls AE, Wagner M, Stahl DA, Jia Z.

ISME J. 2019 Aug 28. doi: 10.1038/s41396-019-0493-x. [Epub ahead of print]

PMID:
31462715
2.

Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation.

Bickhart DM, Watson M, Koren S, Panke-Buisse K, Cersosimo LM, Press MO, Van Tassell CP, Van Kessel JAS, Haley BJ, Kim SW, Heiner C, Suen G, Bakshy K, Liachko I, Sullivan ST, Myer PR, Ghurye J, Pop M, Weimer PJ, Phillippy AM, Smith TPL.

Genome Biol. 2019 Aug 2;20(1):153. doi: 10.1186/s13059-019-1760-x.

3.

High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution.

Callahan BJ, Wong J, Heiner C, Oh S, Theriot CM, Gulati AS, McGill SK, Dougherty MK.

Nucleic Acids Res. 2019 Jul 3. pii: gkz569. doi: 10.1093/nar/gkz569. [Epub ahead of print]

PMID:
31269198
4.

Adeno-associated Virus Genome Population Sequencing Achieves Full Vector Genome Resolution and Reveals Human-Vector Chimeras.

Tai PWL, Xie J, Fong K, Seetin M, Heiner C, Su Q, Weiand M, Wilmot D, Zapp ML, Gao G.

Mol Ther Methods Clin Dev. 2018 Feb 13;9:130-141. doi: 10.1016/j.omtm.2018.02.002. eCollection 2018 Jun 15.

5.

Pacific Biosciences Sequencing and IMGT/HighV-QUEST Analysis of Full-Length Single Chain Fragment Variable from an In Vivo Selected Phage-Display Combinatorial Library.

Hemadou A, Giudicelli V, Smith ML, Lefranc MP, Duroux P, Kossida S, Heiner C, Hepler NL, Kuijpers J, Groppi A, Korlach J, Mondon P, Ottones F, Jacobin-Valat MJ, Laroche-Traineau J, Clofent-Sanchez G.

Front Immunol. 2017 Dec 20;8:1796. doi: 10.3389/fimmu.2017.01796. eCollection 2017.

6.

The Diversity, Structure, and Function of Heritable Adaptive Immunity Sequences in the Aedes aegypti Genome.

Whitfield ZJ, Dolan PT, Kunitomi M, Tassetto M, Seetin MG, Oh S, Heiner C, Paxinos E, Andino R.

Curr Biol. 2017 Nov 20;27(22):3511-3519.e7. doi: 10.1016/j.cub.2017.09.067. Epub 2017 Nov 9.

7.

Analysis of gut microbiota - An ever changing landscape.

Sadowsky MJ, Staley C, Heiner C, Hall R, Kelly CR, Brandt L, Khoruts A.

Gut Microbes. 2017 May 4;8(3):268-275. doi: 10.1080/19490976.2016.1277313. Epub 2017 Jan 4.

8.

A method for near full-length amplification and sequencing for six hepatitis C virus genotypes.

Bull RA, Eltahla AA, Rodrigo C, Koekkoek SM, Walker M, Pirozyan MR, Betz-Stablein B, Toepfer A, Laird M, Oh S, Heiner C, Maher L, Schinkel J, Lloyd AR, Luciani F.

BMC Genomics. 2016 Mar 17;17:247. doi: 10.1186/s12864-016-2575-8.

9.

'Candidatus Tenderia electrophaga', an uncultivated electroautotroph from a biocathode enrichment.

Eddie BJ, Wang Z, Malanoski AP, Hall RJ, Oh SD, Heiner C, Lin B, Strycharz-Glaven SM.

Int J Syst Evol Microbiol. 2016 Jun;66(6):2178-85. doi: 10.1099/ijsem.0.001006. Epub 2016 Mar 7.

PMID:
26957484
10.

Draft Genome Sequences of Burkholderia cenocepacia ET12 Lineage Strains K56-2 and BC7.

Varga JJ, Losada L, Zelazny AM, Kim M, McCorrison J, Brinkac L, Sampaio EP, Greenberg DE, Singh I, Heiner C, Ashby M, Nierman WC, Holland SM, Goldberg JB.

Genome Announc. 2013 Oct 17;1(5). pii: e00841-13. doi: 10.1128/genomeA.00841-13.

11.

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.

Chin CS, Alexander DH, Marks P, Klammer AA, Drake J, Heiner C, Clum A, Copeland A, Huddleston J, Eichler EE, Turner SW, Korlach J.

Nat Methods. 2013 Jun;10(6):563-9. doi: 10.1038/nmeth.2474. Epub 2013 May 5.

PMID:
23644548
12.

Multiple packets of neutral molecules revolving for over a mile.

Zieger PC, van de Meerakker SY, Heiner CE, Bethlem HL, van Roij AJ, Meijer G.

Phys Rev Lett. 2010 Oct 22;105(17):173001. Epub 2010 Oct 18.

PMID:
21231039
13.

Real-time DNA sequencing from single polymerase molecules.

Eid J, Fehr A, Gray J, Luong K, Lyle J, Otto G, Peluso P, Rank D, Baybayan P, Bettman B, Bibillo A, Bjornson K, Chaudhuri B, Christians F, Cicero R, Clark S, Dalal R, Dewinter A, Dixon J, Foquet M, Gaertner A, Hardenbol P, Heiner C, Hester K, Holden D, Kearns G, Kong X, Kuse R, Lacroix Y, Lin S, Lundquist P, Ma C, Marks P, Maxham M, Murphy D, Park I, Pham T, Phillips M, Roy J, Sebra R, Shen G, Sorenson J, Tomaney A, Travers K, Trulson M, Vieceli J, Wegener J, Wu D, Yang A, Zaccarin D, Zhao P, Zhong F, Korlach J, Turner S.

Science. 2009 Jan 2;323(5910):133-8. doi: 10.1126/science.1162986. Epub 2008 Nov 20.

14.

Molecular beams with a tunable velocity.

Heiner CE, Bethlem HL, Meijer G.

Phys Chem Chem Phys. 2006 Jun 21;8(23):2666-76. Epub 2006 Apr 24.

PMID:
16763697
15.

The sequence of the human genome.

Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, Zhang Q, Kodira CD, Zheng XH, Chen L, Skupski M, Subramanian G, Thomas PD, Zhang J, Gabor Miklos GL, Nelson C, Broder S, Clark AG, Nadeau J, McKusick VA, Zinder N, Levine AJ, Roberts RJ, Simon M, Slayman C, Hunkapiller M, Bolanos R, Delcher A, Dew I, Fasulo D, Flanigan M, Florea L, Halpern A, Hannenhalli S, Kravitz S, Levy S, Mobarry C, Reinert K, Remington K, Abu-Threideh J, Beasley E, Biddick K, Bonazzi V, Brandon R, Cargill M, Chandramouliswaran I, Charlab R, Chaturvedi K, Deng Z, Di Francesco V, Dunn P, Eilbeck K, Evangelista C, Gabrielian AE, Gan W, Ge W, Gong F, Gu Z, Guan P, Heiman TJ, Higgins ME, Ji RR, Ke Z, Ketchum KA, Lai Z, Lei Y, Li Z, Li J, Liang Y, Lin X, Lu F, Merkulov GV, Milshina N, Moore HM, Naik AK, Narayan VA, Neelam B, Nusskern D, Rusch DB, Salzberg S, Shao W, Shue B, Sun J, Wang Z, Wang A, Wang X, Wang J, Wei M, Wides R, Xiao C, Yan C, Yao A, Ye J, Zhan M, Zhang W, Zhang H, Zhao Q, Zheng L, Zhong F, Zhong W, Zhu S, Zhao S, Gilbert D, Baumhueter S, Spier G, Carter C, Cravchik A, Woodage T, Ali F, An H, Awe A, Baldwin D, Baden H, Barnstead M, Barrow I, Beeson K, Busam D, Carver A, Center A, Cheng ML, Curry L, Danaher S, Davenport L, Desilets R, Dietz S, Dodson K, Doup L, Ferriera S, Garg N, Gluecksmann A, Hart B, Haynes J, Haynes C, Heiner C, Hladun S, Hostin D, Houck J, Howland T, Ibegwam C, Johnson J, Kalush F, Kline L, Koduru S, Love A, Mann F, May D, McCawley S, McIntosh T, McMullen I, Moy M, Moy L, Murphy B, Nelson K, Pfannkoch C, Pratts E, Puri V, Qureshi H, Reardon M, Rodriguez R, Rogers YH, Romblad D, Ruhfel B, Scott R, Sitter C, Smallwood M, Stewart E, Strong R, Suh E, Thomas R, Tint NN, Tse S, Vech C, Wang G, Wetter J, Williams S, Williams M, Windsor S, Winn-Deen E, Wolfe K, Zaveri J, Zaveri K, Abril JF, Guigó R, Campbell MJ, Sjolander KV, Karlak B, Kejariwal A, Mi H, Lazareva B, Hatton T, Narechania A, Diemer K, Muruganujan A, Guo N, Sato S, Bafna V, Istrail S, Lippert R, Schwartz R, Walenz B, Yooseph S, Allen D, Basu A, Baxendale J, Blick L, Caminha M, Carnes-Stine J, Caulk P, Chiang YH, Coyne M, Dahlke C, Mays A, Dombroski M, Donnelly M, Ely D, Esparham S, Fosler C, Gire H, Glanowski S, Glasser K, Glodek A, Gorokhov M, Graham K, Gropman B, Harris M, Heil J, Henderson S, Hoover J, Jennings D, Jordan C, Jordan J, Kasha J, Kagan L, Kraft C, Levitsky A, Lewis M, Liu X, Lopez J, Ma D, Majoros W, McDaniel J, Murphy S, Newman M, Nguyen T, Nguyen N, Nodell M, Pan S, Peck J, Peterson M, Rowe W, Sanders R, Scott J, Simpson M, Smith T, Sprague A, Stockwell T, Turner R, Venter E, Wang M, Wen M, Wu D, Wu M, Xia A, Zandieh A, Zhu X.

Science. 2001 Feb 16;291(5507):1304-51. Erratum in: Science 2001 Jun 5;292(5523):1838.

PMID:
11181995
16.

The complete sequence of the mucosal pathogen Ureaplasma urealyticum.

Glass JI, Lefkowitz EJ, Glass JS, Heiner CR, Chen EY, Cassell GH.

Nature. 2000 Oct 12;407(6805):757-62.

PMID:
11048724
17.

Sequencing multimegabase-template DNA with BigDye terminator chemistry.

Heiner CR, Hunkapiller KL, Chen SM, Glass JI, Chen EY.

Genome Res. 1998 May;8(5):557-61.

18.

New dye-labeled terminators for improved DNA sequencing patterns.

Rosenblum BB, Lee LG, Spurgeon SL, Khan SH, Menchen SM, Heiner CR, Chen SM.

Nucleic Acids Res. 1997 Nov 15;25(22):4500-4.

19.

New energy transfer dyes for DNA sequencing.

Lee LG, Spurgeon SL, Heiner CR, Benson SC, Rosenblum BB, Menchen SM, Graham RJ, Constantinescu A, Upadhya KG, Cassel JM.

Nucleic Acids Res. 1997 Jul 15;25(14):2816-22.

20.

Communicating about therapeutic interchange.

Heiner CR.

Am J Health Syst Pharm. 1996 Nov 1;53(21):2568-70. No abstract available.

PMID:
8913383
21.

Long-range sequence analysis in Xq28: thirteen known and six candidate genes in 219.4 kb of high GC DNA between the RCP/GCP and G6PD loci.

Chen EY, Zollo M, Mazzarella R, Ciccodicola A, Chen CN, Zuo L, Heiner C, Burough F, Repetto M, Schlessinger D, D'Urso M.

Hum Mol Genet. 1996 May;5(5):659-68.

PMID:
8733135
22.

Specific primer-directed DNA sequence analysis using automated fluorescence detection and labeled primers.

Kaiser R, Hunkapiller T, Heiner C, Hood L.

Methods Enzymol. 1993;218:122-53. No abstract available.

PMID:
8510529
23.

Rapid and reliable fluorescent cycle sequencing of double-stranded templates.

McCombie WR, Heiner C, Kelley JM, Fitzgerald MG, Gocayne JD.

DNA Seq. 1992;2(5):289-96.

PMID:
1633326
24.

Fluorescence detection in automated DNA sequence analysis.

Smith LM, Sanders JZ, Kaiser RJ, Hughes P, Dodd C, Connell CR, Heiner C, Kent SB, Hood LE.

Nature. 1986 Jun 12-18;321(6071):674-9.

PMID:
3713851

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