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Items: 33

1.

Intestinal Ralstonia pickettii augments glucose intolerance in obesity.

Udayappan SD, Kovatcheva-Datchary P, Bakker GJ, Havik SR, Herrema H, Cani PD, Bouter KE, Belzer C, Witjes JJ, Vrieze A, de Sonnaville ESV, Chaplin A, van Raalte DH, Aalvink S, Dallinga-Thie GM, Heilig HGHJ, Bergström G, van der Meij S, van Wagensveld BA, Hoekstra JBL, Holleman F, Stroes ESG, Groen AK, Bäckhed F, de Vos WM, Nieuwdorp M.

PLoS One. 2017 Nov 22;12(11):e0181693. doi: 10.1371/journal.pone.0181693. eCollection 2017. Erratum in: PLoS One. 2018 Jan 30;13(1):e0192339.

2.

Towards standards for human fecal sample processing in metagenomic studies.

Costea PI, Zeller G, Sunagawa S, Pelletier E, Alberti A, Levenez F, Tramontano M, Driessen M, Hercog R, Jung FE, Kultima JR, Hayward MR, Coelho LP, Allen-Vercoe E, Bertrand L, Blaut M, Brown JRM, Carton T, Cools-Portier S, Daigneault M, Derrien M, Druesne A, de Vos WM, Finlay BB, Flint HJ, Guarner F, Hattori M, Heilig H, Luna RA, van Hylckama Vlieg J, Junick J, Klymiuk I, Langella P, Le Chatelier E, Mai V, Manichanh C, Martin JC, Mery C, Morita H, O'Toole PW, Orvain C, Patil KR, Penders J, Persson S, Pons N, Popova M, Salonen A, Saulnier D, Scott KP, Singh B, Slezak K, Veiga P, Versalovic J, Zhao L, Zoetendal EG, Ehrlich SD, Dore J, Bork P.

Nat Biotechnol. 2017 Nov;35(11):1069-1076. doi: 10.1038/nbt.3960. Epub 2017 Oct 2.

PMID:
28967887
3.

The impact of rearing environment on the development of gut microbiota in tilapia larvae.

Giatsis C, Sipkema D, Smidt H, Heilig H, Benvenuti G, Verreth J, Verdegem M.

Sci Rep. 2015 Dec 11;5:18206. doi: 10.1038/srep18206.

4.

Long-lasting effects of early-life antibiotic treatment and routine animal handling on gut microbiota composition and immune system in pigs.

Schokker D, Zhang J, Vastenhouw SA, Heilig HG, Smidt H, Rebel JM, Smits MA.

PLoS One. 2015 Feb 6;10(2):e0116523. doi: 10.1371/journal.pone.0116523. eCollection 2015.

5.

The mucosa-associated microbiota of PSC patients is characterized by low diversity and low abundance of uncultured Clostridiales II.

Rossen NG, Fuentes S, Boonstra K, D'Haens GR, Heilig HG, Zoetendal EG, de Vos WM, Ponsioen CY.

J Crohns Colitis. 2015 Apr;9(4):342-8. doi: 10.1093/ecco-jcc/jju023. Epub 2014 Dec 28.

PMID:
25547975
6.

The microbial eukaryote Blastocystis is a prevalent and diverse member of the healthy human gut microbiota.

Scanlan PD, Stensvold CR, Rajilić-Stojanović M, Heilig HG, De Vos WM, O'Toole PW, Cotter PD.

FEMS Microbiol Ecol. 2014 Oct;90(1):326-30. doi: 10.1111/1574-6941.12396. Epub 2014 Sep 15.

7.

Early-life environmental variation affects intestinal microbiota and immune development in new-born piglets.

Schokker D, Zhang J, Zhang LL, Vastenhouw SA, Heilig HG, Smidt H, Rebel JM, Smits MA.

PLoS One. 2014 Jun 18;9(6):e100040. doi: 10.1371/journal.pone.0100040. eCollection 2014.

8.

Duodenal microbiota composition and mucosal homeostasis in pediatric celiac disease.

Cheng J, Kalliomäki M, Heilig HG, Palva A, Lähteenoja H, de Vos WM, Salojärvi J, Satokari R.

BMC Gastroenterol. 2013 Jul 11;13:113. doi: 10.1186/1471-230X-13-113.

9.

Bacterial diversity in meconium of preterm neonates and evolution of their fecal microbiota during the first month of life.

Moles L, Gómez M, Heilig H, Bustos G, Fuentes S, de Vos W, Fernández L, Rodríguez JM, Jiménez E.

PLoS One. 2013 Jun 28;8(6):e66986. doi: 10.1371/journal.pone.0066986. Print 2013.

10.

Long-term monitoring of the human intestinal microbiota composition.

Rajilić-Stojanović M, Heilig HG, Tims S, Zoetendal EG, de Vos WM.

Environ Microbiol. 2012 Oct 15. doi: 10.1111/1462-2920.12023. [Epub ahead of print]

PMID:
23286720
11.

Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome.

Vrieze A, Van Nood E, Holleman F, Salojärvi J, Kootte RS, Bartelsman JF, Dallinga-Thie GM, Ackermans MT, Serlie MJ, Oozeer R, Derrien M, Druesne A, Van Hylckama Vlieg JE, Bloks VW, Groen AK, Heilig HG, Zoetendal EG, Stroes ES, de Vos WM, Hoekstra JB, Nieuwdorp M.

Gastroenterology. 2012 Oct;143(4):913-6.e7. doi: 10.1053/j.gastro.2012.06.031. Epub 2012 Jun 20. Erratum in: Gastroenterology. 2013 Jan;144(1):250.

PMID:
22728514
12.

Global and deep molecular analysis of microbiota signatures in fecal samples from patients with irritable bowel syndrome.

Rajilić-Stojanović M, Biagi E, Heilig HG, Kajander K, Kekkonen RA, Tims S, de Vos WM.

Gastroenterology. 2011 Nov;141(5):1792-801. doi: 10.1053/j.gastro.2011.07.043. Epub 2011 Aug 5.

PMID:
21820992
13.

Concurrent hexachlorobenzene and chloroethene transformation by endogenous dechlorinating microorganisms in the Ebro River sediment.

Taş N, Heilig HG, van Eekert MH, Schraa G, de Vos WM, Smidt H.

FEMS Microbiol Ecol. 2010 Dec;74(3):682-92. doi: 10.1111/j.1574-6941.2010.00972.x. Epub 2010 Oct 13.

14.

Semi-automated extraction of microbial DNA from feces for qPCR and phylogenetic microarray analysis.

Nylund L, Heilig HG, Salminen S, de Vos WM, Satokari R.

J Microbiol Methods. 2010 Nov;83(2):231-5. doi: 10.1016/j.mimet.2010.09.003. Epub 2010 Sep 16.

PMID:
20849891
15.

Evaluating the microbial diversity of an in vitro model of the human large intestine by phylogenetic microarray analysis.

Rajilić-Stojanović M, Maathuis A, Heilig HG, Venema K, de Vos WM, Smidt H.

Microbiology. 2010 Nov;156(Pt 11):3270-81. doi: 10.1099/mic.0.042044-0. Epub 2010 Sep 16.

PMID:
20847013
16.

High temporal and inter-individual variation detected in the human ileal microbiota.

Booijink CC, El-Aidy S, Rajilić-Stojanović M, Heilig HG, Troost FJ, Smidt H, Kleerebezem M, De Vos WM, Zoetendal EG.

Environ Microbiol. 2010 Dec;12(12):3213-27. doi: 10.1111/j.1462-2920.2010.02294.x.

PMID:
20626454
17.

Isolation and characterization of a new CO-utilizing strain, Thermoanaerobacter thermohydrosulfuricus subsp. carboxydovorans, isolated from a geothermal spring in Turkey.

Balk M, Heilig HG, van Eekert MH, Stams AJ, Rijpstra IC, Sinninghe-Damsté JS, de Vos WM, Kengen SW.

Extremophiles. 2009 Nov;13(6):885-94. doi: 10.1007/s00792-009-0276-9. Epub 2009 Aug 23.

18.

Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults.

Rajilić-Stojanović M, Heilig HG, Molenaar D, Kajander K, Surakka A, Smidt H, de Vos WM.

Environ Microbiol. 2009 Jul;11(7):1736-51. doi: 10.1111/j.1462-2920.2009.01900.x. Epub 2009 Mar 11.

19.

Isolation of bifidobacteria from breast milk and assessment of the bifidobacterial population by PCR-denaturing gradient gel electrophoresis and quantitative real-time PCR.

Martín R, Jiménez E, Heilig H, Fernández L, Marín ML, Zoetendal EG, Rodríguez JM.

Appl Environ Microbiol. 2009 Feb;75(4):965-9. doi: 10.1128/AEM.02063-08. Epub 2008 Dec 16.

20.

16S rRNA targeted DGGE fingerprinting of microbial communities.

Tzeneva VA, Heilig HG, van Vliet WA, Akkermans AD, de Vos WM, Smidt H.

Methods Mol Biol. 2008;410:335-49.

PMID:
18642607
21.

Isolation of RNA from bacterial samples of the human gastrointestinal tract.

Zoetendal EG, Booijink CC, Klaassens ES, Heilig HG, Kleerebezem M, Smidt H, de Vos WM.

Nat Protoc. 2006;1(2):954-9.

PMID:
17406329
22.

Isolation of DNA from bacterial samples of the human gastrointestinal tract.

Zoetendal EG, Heilig HG, Klaassens ES, Booijink CC, Kleerebezem M, Smidt H, de Vos WM.

Nat Protoc. 2006;1(2):870-3.

PMID:
17406319
23.

Cultivation-independent assessment of the bacterial diversity of breast milk among healthy women.

Martín R, Heilig HG, Zoetendal EG, Jiménez E, Fernández L, Smidt H, Rodríguez JM.

Res Microbiol. 2007 Jan-Feb;158(1):31-7. Epub 2006 Dec 19.

PMID:
17224259
24.

Enrichment and detection of microorganisms involved in direct and indirect methanogenesis from methanol in an anaerobic thermophilic bioreactor.

Roest K, Altinbas M, Paulo PL, Heilig HG, Akkermans AD, Smidt H, de Vos WM, Stams AJ.

Microb Ecol. 2005 Oct;50(3):440-6. Epub 2005 Nov 24.

PMID:
16328652
25.

Detection and quantification of microorganisms in anaerobic bioreactors.

Oude Elferink SJ, van Lis R, Heilig HG, Akkermans AD, Stams AJ.

Biodegradation. 1998;9(3-4):169-77.

PMID:
16237593
26.

Diversity, vitality and activities of intestinal lactic acid bacteria and bifidobacteria assessed by molecular approaches.

Vaughan EE, Heilig HG, Ben-Amor K, de Vos WM.

FEMS Microbiol Rev. 2005 Aug;29(3):477-90. Review.

27.

Genetic diversity of viable, injured, and dead fecal bacteria assessed by fluorescence-activated cell sorting and 16S rRNA gene analysis.

Ben-Amor K, Heilig H, Smidt H, Vaughan EE, Abee T, de Vos WM.

Appl Environ Microbiol. 2005 Aug;71(8):4679-89.

28.

Bacterial population in traditional sourdough evaluated by molecular methods.

Randazzo CL, Heilig H, Restuccia C, Giudici P, Caggia C.

J Appl Microbiol. 2005;99(2):251-8.

29.

Community analysis of a full-scale anaerobic bioreactor treating paper mill wastewater.

Roest K, Heilig HG, Smidt H, de Vos WM, Stams AJ, Akkermans AD.

Syst Appl Microbiol. 2005 Mar;28(2):175-85.

PMID:
15830810
30.

Sponge-cell culture? A molecular identification method for sponge cells.

Sipkema D, Heilig HG, Akkermans AD, Osinga R, Tramper J, Wijffels RH.

Mar Biotechnol (NY). 2003 Sep-Oct;5(5):443-9.

PMID:
14730427
31.

Molecular diversity of Lactobacillus spp. and other lactic acid bacteria in the human intestine as determined by specific amplification of 16S ribosomal DNA.

Heilig HG, Zoetendal EG, Vaughan EE, Marteau P, Akkermans AD, de Vos WM.

Appl Environ Microbiol. 2002 Jan;68(1):114-23.

32.

A molecular view of the intestinal ecosystem.

Vaughan EE, Schut F, Heilig HG, Zoetendal EG, de Vos WM, Akkermans AD.

Curr Issues Intest Microbiol. 2000 Mar;1(1):1-12. Review.

PMID:
11709849
33.

Critical evaluation of the compactor.

Cohn R, Heilig H, Delorimier A.

J Pharm Sci. 1966 Mar;55(3):328-31. No abstract available.

PMID:
5960180

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