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Items: 33

1.

Sequence Variation in Multidrug-Resistant Plasmid pLUH01, Isolated from Human Nasopharyngeal Swabs.

Atkinson KV, Bishop LA, Rhodes G, Salez N, McEwan NR, Hegarty MJ, Robey J, Harding N, Wetherell S, Lauder RM, Pickup RW, Wilkinson M, Gatherer D.

Microbiol Resour Announc. 2018 Jul 12;7(1). pii: e00835-18. doi: 10.1128/MRA.00835-18. eCollection 2018 Jul.

2.

Polyomic tools for an emerging livestock parasite, the rumen fluke Calicophoron daubneyi; identifying shifts in rumen functionality.

Huson KM, Morphew RM, Allen NR, Hegarty MJ, Worgan HJ, Girdwood SE, Jones EL, Phillips HC, Vickers M, Swain M, Smith D, Kingston-Smith AH, Brophy PM.

Parasit Vectors. 2018 Dec 4;11(1):617. doi: 10.1186/s13071-018-3225-6.

3.

Detecting genetic regions associated with height in the native ponies of the British Isles by using high density SNP genotyping.

Skujina I, Winton CL, Hegarty MJ, McMahon R, Nash DM, Davies Morel MCG, McEwan NR.

Genome. 2018 Oct;61(10):767-770. doi: 10.1139/gen-2018-0006. Epub 2018 Sep 5.

PMID:
30184439
4.

Nasopharyngeal metagenomic deep sequencing data, Lancaster, UK, 2014-2015.

Atkinson KV, Bishop LA, Rhodes G, Salez N, McEwan NR, Hegarty MJ, Robey J, Harding N, Wetherell S, Lauder RM, Pickup RW, Wilkinson M, Gatherer D.

Sci Data. 2017 Oct 24;4:170161. doi: 10.1038/sdata.2017.161.

5.

Genome Sequence of Human Papillomavirus Type 20, Strain HPV-20/Lancaster/2015.

Atkinson KV, Bishop LA, Rhodes G, Salez N, McEwan NR, Hegarty MJ, Robey J, Harding N, Wetherell S, Lauder RM, Pickup RW, Wilkinson M, Gatherer D.

Genome Announc. 2017 Aug 3;5(31). pii: e00712-17. doi: 10.1128/genomeA.00712-17.

6.

Erratum: Influenza C in Lancaster, UK, in the winter of 2014-2015.

Atkinson KV, Bishop LA, Rhodes G, Salez N, McEwan NR, Hegarty MJ, Robey J, Harding N, Wetherell S, Lauder RM, Pickup RW, Wilkinson M, Gatherer D.

Sci Rep. 2017 May 26;7:46815. doi: 10.1038/srep46815. No abstract available.

7.

A pilot study using metagenomic sequencing of the sputum microbiome suggests potential bacterial biomarkers for lung cancer.

Cameron SJS, Lewis KE, Huws SA, Hegarty MJ, Lewis PD, Pachebat JA, Mur LAJ.

PLoS One. 2017 May 25;12(5):e0177062. doi: 10.1371/journal.pone.0177062. eCollection 2017.

8.

Genome Sequence of Human Papillomavirus 23 Strain HPV-23/Lancaster/2015.

Atkinson KV, Bishop LA, Rhodes G, Salez N, McEwan NR, Hegarty MJ, Robey J, Harding N, Wetherell S, Lauder RM, Pickup RW, Wilkinson M, Gatherer D.

Genome Announc. 2017 May 18;5(20). pii: e00257-17. doi: 10.1128/genomeA.00257-17.

9.

Influenza C in Lancaster, UK, in the winter of 2014-2015.

Atkinson KV, Bishop LA, Rhodes G, Salez N, McEwan NR, Hegarty MJ, Robey J, Harding N, Wetherell S, Lauder RM, Pickup RW, Wilkinson M, Gatherer D.

Sci Rep. 2017 Apr 13;7:46578. doi: 10.1038/srep46578. Erratum in: Sci Rep. 2017 May 26;7:46815.

10.

Genome Sequence of Human Rhinovirus A22, Strain Lancaster/2015.

Atkinson KV, Bishop LA, Rhodes G, Salez N, McEwan NR, Hegarty MJ, Robey J, Harding N, Wetherell S, Lauder RM, Pickup RW, Wilkinson M, Gatherer D.

Genome Announc. 2017 Mar 23;5(12). pii: e01713-16. doi: 10.1128/genomeA.01713-16.

11.

Using DNA metabarcoding to investigate honey bee foraging reveals limited flower use despite high floral availability.

de Vere N, Jones LE, Gilmore T, Moscrop J, Lowe A, Smith D, Hegarty MJ, Creer S, Ford CR.

Sci Rep. 2017 Feb 16;7:42838. doi: 10.1038/srep42838.

12.

Temporal Metagenomic and Metabolomic Characterization of Fresh Perennial Ryegrass Degradation by Rumen Bacteria.

Mayorga OL, Kingston-Smith AH, Kim EJ, Allison GG, Wilkinson TJ, Hegarty MJ, Theodorou MK, Newbold CJ, Huws SA.

Front Microbiol. 2016 Nov 18;7:1854. eCollection 2016.

13.

De-novo transcriptome assembly for gene identification, analysis, annotation, and molecular marker discovery in Onobrychis viciifolia.

Mora-Ortiz M, Swain MT, Vickers MJ, Hegarty MJ, Kelly R, Smith LM, Skøt L.

BMC Genomics. 2016 Sep 26;17(1):756.

14.

Metagenomic Sequencing of the Chronic Obstructive Pulmonary Disease Upper Bronchial Tract Microbiome Reveals Functional Changes Associated with Disease Severity.

Cameron SJ, Lewis KE, Huws SA, Lin W, Hegarty MJ, Lewis PD, Mur LA, Pachebat JA.

PLoS One. 2016 Feb 12;11(2):e0149095. doi: 10.1371/journal.pone.0149095. eCollection 2016.

15.

Comparative genetic diversity in a sample of pony breeds from the U.K. and North America: a case study in the conservation of global genetic resources.

Winton CL, Plante Y, Hind P, McMahon R, Hegarty MJ, McEwan NR, Davies-Morel MC, Morgan CM, Powell W, Nash DM.

Ecol Evol. 2015 Aug;5(16):3507-22. doi: 10.1002/ece3.1562. Epub 2015 Jul 31.

16.

Generation of whole genome sequences of new Cryptosporidium hominis and Cryptosporidium parvum isolates directly from stool samples.

Hadfield SJ, Pachebat JA, Swain MT, Robinson G, Cameron SJ, Alexander J, Hegarty MJ, Elwin K, Chalmers RM.

BMC Genomics. 2015 Aug 29;16:650. doi: 10.1186/s12864-015-1805-9.

17.

Using DNA Metabarcoding to Identify the Floral Composition of Honey: A New Tool for Investigating Honey Bee Foraging Preferences.

Hawkins J, de Vere N, Griffith A, Ford CR, Allainguillaume J, Hegarty MJ, Baillie L, Adams-Groom B.

PLoS One. 2015 Aug 26;10(8):e0134735. doi: 10.1371/journal.pone.0134735. eCollection 2015.

18.

The human salivary microbiome exhibits temporal stability in bacterial diversity.

Cameron SJ, Huws SA, Hegarty MJ, Smith DP, Mur LA.

FEMS Microbiol Ecol. 2015 Sep;91(9):fiv091. doi: 10.1093/femsec/fiv091. Epub 2015 Jul 22.

19.

Draft Genomes, Phylogenetic Reconstruction, and Comparative Genomics of Two Novel Cohabiting Bacterial Symbionts Isolated from Frankliniella occidentalis.

Facey PD, Méric G, Hitchings MD, Pachebat JA, Hegarty MJ, Chen X, Morgan LV, Hoeppner JE, Whitten MM, Kirk WD, Dyson PJ, Sheppard SK, Del Sol R.

Genome Biol Evol. 2015 Jul 15;7(8):2188-202. doi: 10.1093/gbe/evv136.

20.

Transcriptomic analysis of the lesser spotted catshark (Scyliorhinus canicula) pancreas, liver and brain reveals molecular level conservation of vertebrate pancreas function.

Mulley JF, Hargreaves AD, Hegarty MJ, Heller RS, Swain MT.

BMC Genomics. 2014 Dec 6;15:1074. doi: 10.1186/1471-2164-15-1074.

21.

Restriction and recruitment-gene duplication and the origin and evolution of snake venom toxins.

Hargreaves AD, Swain MT, Hegarty MJ, Logan DW, Mulley JF.

Genome Biol Evol. 2014 Aug;6(8):2088-95. doi: 10.1093/gbe/evu166.

22.

De novo assembly of red clover transcriptome based on RNA-Seq data provides insight into drought response, gene discovery and marker identification.

Yates SA, Swain MT, Hegarty MJ, Chernukin I, Lowe M, Allison GG, Ruttink T, Abberton MT, Jenkins G, Skøt L.

BMC Genomics. 2014 Jun 9;15:453. doi: 10.1186/1471-2164-15-453.

23.

Genetic diversity and phylogenetic analysis of native mountain ponies of Britain and Ireland reveals a novel rare population.

Winton CL, Hegarty MJ, McMahon R, Slavov GT, McEwan NR, Davies-Morel MC, Morgan CM, Powell W, Nash DM.

Ecol Evol. 2013 Apr;3(4):934-47. doi: 10.1002/ece3.507. Epub 2013 Mar 5.

24.

Invasion of the hybrids.

Hegarty MJ.

Mol Ecol. 2012 Oct;21(19):4669-71. doi: 10.1111/j.1365-294X.2012.05720.x.

PMID:
23009648
25.

Pollen-pistil interactions and self-incompatibility in the Asteraceae: new insights from studies of Senecio squalidus (Oxford ragwort).

Allen AM, Thorogood CJ, Hegarty MJ, Lexer C, Hiscock SJ.

Ann Bot. 2011 Sep;108(4):687-98. doi: 10.1093/aob/mcr147. Epub 2011 Jul 12. Review.

26.

Nonadditive changes to cytosine methylation as a consequence of hybridization and genome duplication in Senecio (Asteraceae).

Hegarty MJ, Batstone T, Barker GL, Edwards KJ, Abbott RJ, Hiscock SJ.

Mol Ecol. 2011 Jan;20(1):105-13. doi: 10.1111/j.1365-294X.2010.04926.x. Epub 2010 Nov 12.

PMID:
21073590
27.

The complex nature of allopolyploid plant genomes.

Hegarty MJ, Hiscock SJ.

Heredity (Edinb). 2009 Aug;103(2):100-1. doi: 10.1038/hdy.2009.61. Epub 2009 Jun 3. No abstract available.

28.

Extreme changes to gene expression associated with homoploid hybrid speciation.

Hegarty MJ, Barker GL, Brennan AC, Edwards KJ, Abbott RJ, Hiscock SJ.

Mol Ecol. 2009 Mar;18(5):877-89. doi: 10.1111/j.1365-294X.2008.04054.x. Epub 2009 Jan 16.

PMID:
19175502
29.

Changes to gene expression associated with hybrid speciation in plants: further insights from transcriptomic studies in Senecio.

Hegarty MJ, Barker GL, Brennan AC, Edwards KJ, Abbott RJ, Hiscock SJ.

Philos Trans R Soc Lond B Biol Sci. 2008 Sep 27;363(1506):3055-69. doi: 10.1098/rstb.2008.0080.

30.

Genomic clues to the evolutionary success of polyploid plants.

Hegarty MJ, Hiscock SJ.

Curr Biol. 2008 May 20;18(10):R435-R444. doi: 10.1016/j.cub.2008.03.043. Review.

31.

Transcriptome shock after interspecific hybridization in senecio is ameliorated by genome duplication.

Hegarty MJ, Barker GL, Wilson ID, Abbott RJ, Edwards KJ, Hiscock SJ.

Curr Biol. 2006 Aug 22;16(16):1652-9.

32.

Development of anonymous cDNA microarrays to study changes to the Senecio floral transcriptome during hybrid speciation.

Hegarty MJ, Jones JM, Wilson ID, Barker GL, Coghill JA, Sanchez-Baracaldo P, Liu G, Buggs RJ, Abbott RJ, Edwards KJ, Hiscock SJ.

Mol Ecol. 2005 Jul;14(8):2493-510.

PMID:
15969730
33.

Hybrid speciation in plants: new insights from molecular studies.

Hegarty MJ, Hiscock SJ.

New Phytol. 2005 Feb;165(2):411-23. Review.

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