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Items: 1 to 50 of 134

1.

Farewell Stan Stanley Falkow: 1934-2018.

Cabello FC, Cohen SN, Curtiss R 3rd, Dougan G, van Embden J, Finlay BB, Heffron F, Helinski D, Hull R, Hull S, Isberg R, Kopecko DJ, Levy S, Mekalanos J, Ortiz JM, Rappuoli R, Roberts MC, So M, Timmis KN.

Environ Microbiol. 2018 Jul;20(7):2322-2333. doi: 10.1111/1462-2920.14308. Epub 2018 Aug 26. No abstract available.

PMID:
30146753
2.

ChIP-Seq Analysis of the σE Regulon of Salmonella enterica Serovar Typhimurium Reveals New Genes Implicated in Heat Shock and Oxidative Stress Response.

Li J, Overall CC, Johnson RC, Jones MB, McDermott JE, Heffron F, Adkins JN, Cambronne ED.

PLoS One. 2015 Sep 21;10(9):e0138466. doi: 10.1371/journal.pone.0138466. eCollection 2015.

3.

Analysis of the Salmonella regulatory network suggests involvement of SsrB and H-NS in σ(E)-regulated SPI-2 gene expression.

Li J, Overall CC, Nakayasu ES, Kidwai AS, Jones MB, Johnson RC, Nguyen NT, McDermott JE, Ansong C, Heffron F, Cambronne ED, Adkins JN.

Front Microbiol. 2015 Feb 10;6:27. doi: 10.3389/fmicb.2015.00027. eCollection 2015.

4.

Global analysis of Salmonella alternative sigma factor E on protein translation.

Li J, Nakayasu ES, Overall CC, Johnson RC, Kidwai AS, McDermott JE, Ansong C, Heffron F, Cambronne ED, Adkins JN.

J Proteome Res. 2015 Apr 3;14(4):1716-26. doi: 10.1021/pr5010423. Epub 2015 Feb 27.

5.

Comparative phosphoproteomics reveals components of host cell invasion and post-transcriptional regulation during Francisella infection.

Nakayasu ES, Tempel R, Cambronne XA, Petyuk VA, Jones MB, Gritsenko MA, Monroe ME, Yang F, Smith RD, Adkins JN, Heffron F.

Mol Cell Proteomics. 2013 Nov;12(11):3297-309. doi: 10.1074/mcp.M113.029850. Epub 2013 Aug 22.

6.

Diverse secreted effectors are required for Salmonella persistence in a mouse infection model.

Kidwai AS, Mushamiri I, Niemann GS, Brown RN, Adkins JN, Heffron F.

PLoS One. 2013 Aug 12;8(8):e70753. doi: 10.1371/journal.pone.0070753. eCollection 2013.

7.

A Multi-Omic View of Host-Pathogen-Commensal Interplay in Salmonella-Mediated Intestinal Infection.

Deatherage Kaiser BL, Li J, Sanford JA, Kim YM, Kronewitter SR, Jones MB, Peterson CT, Peterson SN, Frank BC, Purvine SO, Brown JN, Metz TO, Smith RD, Heffron F, Adkins JN.

PLoS One. 2013 Jun 26;8(6):e67155. doi: 10.1371/journal.pone.0067155. Print 2013.

8.

Top-down proteomics reveals a unique protein S-thiolation switch in Salmonella Typhimurium in response to infection-like conditions.

Ansong C, Wu S, Meng D, Liu X, Brewer HM, Deatherage Kaiser BL, Nakayasu ES, Cort JR, Pevzner P, Smith RD, Heffron F, Adkins JN, Pasa-Tolic L.

Proc Natl Acad Sci U S A. 2013 Jun 18;110(25):10153-8. doi: 10.1073/pnas.1221210110. Epub 2013 May 29.

9.

New sub-family of lysozyme-like proteins shows no catalytic activity: crystallographic and biochemical study of STM3605 protein from Salmonella Typhimurium.

Michalska K, Brown RN, Li H, Jedrzejczak R, Niemann GS, Heffron F, Cort JR, Adkins JN, Babnigg G, Joachimiak A.

J Struct Funct Genomics. 2013 Mar;14(1):1-10. doi: 10.1007/s10969-013-9151-0. Epub 2013 Apr 10.

10.

Salmonella modulates metabolism during growth under conditions that induce expression of virulence genes.

Kim YM, Schmidt BJ, Kidwai AS, Jones MB, Deatherage Kaiser BL, Brewer HM, Mitchell HD, Palsson BO, McDermott JE, Heffron F, Smith RD, Peterson SN, Ansong C, Hyduke DR, Metz TO, Adkins JN.

Mol Biosyst. 2013 Jun;9(6):1522-34. doi: 10.1039/c3mb25598k. Epub 2013 Apr 5.

11.

RNA type III secretion signals that require Hfq.

Niemann GS, Brown RN, Mushamiri IT, Nguyen NT, Taiwo R, Stufkens A, Smith RD, Adkins JN, McDermott JE, Heffron F.

J Bacteriol. 2013 May;195(10):2119-25. doi: 10.1128/JB.00024-13. Epub 2013 Feb 8.

12.

A Comprehensive Subcellular Proteomic Survey of Salmonella Grown under Phagosome-Mimicking versus Standard Laboratory Conditions.

Brown RN, Sanford JA, Park JH, Deatherage BL, Champion BL, Smith RD, Heffron F, Adkins JN.

Int J Proteomics. 2012;2012:123076. doi: 10.1155/2012/123076. Epub 2012 Jul 25.

13.

Studying Salmonellae and Yersiniae host-pathogen interactions using integrated 'omics and modeling.

Ansong C, Deatherage BL, Hyduke D, Schmidt B, McDermott JE, Jones MB, Chauhan S, Charusanti P, Kim YM, Nakayasu ES, Li J, Kidwai A, Niemann G, Brown RN, Metz TO, McAteer K, Heffron F, Peterson SN, Motin V, Palsson BO, Smith RD, Adkins JN.

Curr Top Microbiol Immunol. 2013;363:21-41. doi: 10.1007/82_2012_247. Review.

14.

Experimental annotation of post-translational features and translated coding regions in the pathogen Salmonella Typhimurium.

Ansong C, Tolić N, Purvine SO, Porwollik S, Jones M, Yoon H, Payne SH, Martin JL, Burnet MC, Monroe ME, Venepally P, Smith RD, Peterson SN, Heffron F, McClelland M, Adkins JN.

BMC Genomics. 2011 Aug 25;12:433. doi: 10.1186/1471-2164-12-433.

15.

Systems analysis of multiple regulator perturbations allows discovery of virulence factors in Salmonella.

Yoon H, Ansong C, McDermott JE, Gritsenko M, Smith RD, Heffron F, Adkins JN.

BMC Syst Biol. 2011 Jun 28;5:100. doi: 10.1186/1752-0509-5-100.

16.

Technologies and approaches to elucidate and model the virulence program of salmonella.

McDermott JE, Yoon H, Nakayasu ES, Metz TO, Hyduke DR, Kidwai AS, Palsson BO, Adkins JN, Heffron F.

Front Microbiol. 2011 Jun 2;2:121. doi: 10.3389/fmicb.2011.00121. eCollection 2011.

17.

Discovery of Salmonella virulence factors translocated via outer membrane vesicles to murine macrophages.

Yoon H, Ansong C, Adkins JN, Heffron F.

Infect Immun. 2011 Jun;79(6):2182-92. doi: 10.1128/IAI.01277-10. Epub 2011 Apr 4.

18.

Quantitative PCR-based competitive index for high-throughput screening of Salmonella virulence factors.

Yoon H, Gros P, Heffron F.

Infect Immun. 2011 Jan;79(1):360-8. doi: 10.1128/IAI.00873-10. Epub 2010 Nov 1.

19.

Discovery of novel secreted virulence factors from Salmonella enterica serovar Typhimurium by proteomic analysis of culture supernatants.

Niemann GS, Brown RN, Gustin JK, Stufkens A, Shaikh-Kidwai AS, Li J, McDermott JE, Brewer HM, Schepmoes A, Smith RD, Adkins JN, Heffron F.

Infect Immun. 2011 Jan;79(1):33-43. doi: 10.1128/IAI.00771-10. Epub 2010 Oct 25.

20.

Computational prediction of type III and IV secreted effectors in gram-negative bacteria.

McDermott JE, Corrigan A, Peterson E, Oehmen C, Niemann G, Cambronne ED, Sharp D, Adkins JN, Samudrala R, Heffron F.

Infect Immun. 2011 Jan;79(1):23-32. doi: 10.1128/IAI.00537-10. Epub 2010 Oct 25. Review.

21.

A multi-pronged search for a common structural motif in the secretion signal of Salmonella enterica serovar Typhimurium type III effector proteins.

Buchko GW, Niemann G, Baker ES, Belov ME, Smith RD, Heffron F, Adkins JN, McDermott JE.

Mol Biosyst. 2010 Dec;6(12):2448-58. doi: 10.1039/c0mb00097c. Epub 2010 Sep 29.

22.

Mutations of Francisella novicida that alter the mechanism of its phagocytosis by murine macrophages.

Lai XH, Shirley RL, Crosa L, Kanistanon D, Tempel R, Ernst RK, Gallagher LA, Manoil C, Heffron F.

PLoS One. 2010 Jul 29;5(7):e11857. doi: 10.1371/journal.pone.0011857.

23.

Performing comparative peptidomics analyses of Salmonella from different growth conditions.

Adkins JN, Mottaz H, Metz TO, Ansong C, Manes NP, Smith RD, Heffron F.

Methods Mol Biol. 2010;615:13-27. doi: 10.1007/978-1-60761-535-4_2.

PMID:
20013197
24.

Proteome of Salmonella Enterica Serotype Typhimurium Grown in a Low Mg/pH Medium.

Shi L, Ansong C, Smallwood H, Rommereim L, McDermott JE, Brewer HM, Norbeck AD, Taylor RC, Gustin JK, Heffron F, Smith RD, Adkins JN.

J Proteomics Bioinform. 2009;2:388-397.

25.

A statistical framework for protein quantitation in bottom-up MS-based proteomics.

Karpievitch Y, Stanley J, Taverner T, Huang J, Adkins JN, Ansong C, Heffron F, Metz TO, Qian WJ, Yoon H, Smith RD, Dabney AR.

Bioinformatics. 2009 Aug 15;25(16):2028-34. doi: 10.1093/bioinformatics/btp362. Epub 2009 Jun 17.

26.

Proteomic investigation of the time course responses of RAW 264.7 macrophages to infection with Salmonella enterica.

Shi L, Chowdhury SM, Smallwood HS, Yoon H, Mottaz-Brewer HM, Norbeck AD, McDermott JE, Clauss TR, Heffron F, Smith RD, Adkins JN.

Infect Immun. 2009 Aug;77(8):3227-33. doi: 10.1128/IAI.00063-09. Epub 2009 Jun 15.

27.

Accurate prediction of secreted substrates and identification of a conserved putative secretion signal for type III secretion systems.

Samudrala R, Heffron F, McDermott JE.

PLoS Pathog. 2009 Apr;5(4):e1000375. doi: 10.1371/journal.ppat.1000375. Epub 2009 Apr 24.

28.

Global systems-level analysis of Hfq and SmpB deletion mutants in Salmonella: implications for virulence and global protein translation.

Ansong C, Yoon H, Porwollik S, Mottaz-Brewer H, Petritis BO, Jaitly N, Adkins JN, McClelland M, Heffron F, Smith RD.

PLoS One. 2009;4(3):e4809. doi: 10.1371/journal.pone.0004809. Epub 2009 Mar 11.

29.

Coordinated regulation of virulence during systemic infection of Salmonella enterica serovar Typhimurium.

Yoon H, McDermott JE, Porwollik S, McClelland M, Heffron F.

PLoS Pathog. 2009 Feb;5(2):e1000306. doi: 10.1371/journal.ppat.1000306. Epub 2009 Feb 20.

30.

A method for investigating protein-protein interactions related to salmonella typhimurium pathogenesis.

Chowdhury SM, Shi L, Yoon H, Ansong C, Rommereim LM, Norbeck AD, Auberry KJ, Moore RJ, Adkins JN, Heffron F, Smith RD.

J Proteome Res. 2009 Mar;8(3):1504-14. doi: 10.1021/pr800865d.

31.

Optimization of proteomic sample preparation procedures for comprehensive protein characterization of pathogenic systems.

Mottaz-Brewer HM, Norbeck AD, Adkins JN, Manes NP, Ansong C, Shi L, Rikihisa Y, Kikuchi T, Wong SW, Estep RD, Heffron F, Pasa-Tolic L, Smith RD.

J Biomol Tech. 2008 Dec;19(5):285-95.

32.

Bottlenecks and hubs in inferred networks are important for virulence in Salmonella typhimurium.

McDermott JE, Taylor RC, Yoon H, Heffron F.

J Comput Biol. 2009 Feb;16(2):169-80. doi: 10.1089/cmb.2008.04TT.

PMID:
19178137
33.

Use of high-throughput mass spectrometry to elucidate host-pathogen interactions in Salmonella.

Rodland KD, Adkins JN, Ansong C, Chowdhury S, Manes NP, Shi L, Yoon H, Smith RD, Heffron F.

Future Microbiol. 2008 Dec;3(6):625-34. doi: 10.2217/17460913.3.6.625. Review.

34.

Gene set analyses for interpreting microarray experiments on prokaryotic organisms.

Tintle NL, Best AA, DeJongh M, Van Bruggen D, Heffron F, Porwollik S, Taylor RC.

BMC Bioinformatics. 2008 Nov 5;9:469. doi: 10.1186/1471-2105-9-469.

35.

Iron transport in Francisella in the absence of a recognizable TonB protein still requires energy generated by the proton motive force.

Crosa LM, Crosa JH, Heffron F.

Biometals. 2009 Apr;22(2):337-44. doi: 10.1007/s10534-008-9170-7. Epub 2008 Oct 23.

PMID:
18946633
36.

Proteomics analysis of the causative agent of typhoid fever.

Ansong C, Yoon H, Norbeck AD, Gustin JK, McDermott JE, Mottaz HM, Rue J, Adkins JN, Heffron F, Smith RD.

J Proteome Res. 2008 Feb;7(2):546-57. doi: 10.1021/pr070434u. Epub 2008 Jan 1.

PMID:
18166006
37.

Analysis of cells targeted by Salmonella type III secretion in vivo.

Geddes K, Cruz F, Heffron F.

PLoS Pathog. 2007 Dec;3(12):e196.

38.

Targeted protein degradation by Salmonella under phagosome-mimicking culture conditions investigated using comparative peptidomics.

Manes NP, Gustin JK, Rue J, Mottaz HM, Purvine SO, Norbeck AD, Monroe ME, Zimmer JS, Metz TO, Adkins JN, Smith RD, Heffron F.

Mol Cell Proteomics. 2007 Apr;6(4):717-27. Epub 2007 Jan 16.

39.

Salmonella typhimurium disseminates within its host by manipulating the motility of infected cells.

Worley MJ, Nieman GS, Geddes K, Heffron F.

Proc Natl Acad Sci U S A. 2006 Nov 21;103(47):17915-20. Epub 2006 Nov 9.

40.

Attenuated Francisella novicida transposon mutants protect mice against wild-type challenge.

Tempel R, Lai XH, Crosa L, Kozlowicz B, Heffron F.

Infect Immun. 2006 Sep;74(9):5095-105.

41.

Proteomic analysis of Salmonella enterica serovar typhimurium isolated from RAW 264.7 macrophages: identification of a novel protein that contributes to the replication of serovar typhimurium inside macrophages.

Shi L, Adkins JN, Coleman JR, Schepmoes AA, Dohnkova A, Mottaz HM, Norbeck AD, Purvine SO, Manes NP, Smallwood HS, Wang H, Forbes J, Gros P, Uzzau S, Rodland KD, Heffron F, Smith RD, Squier TC.

J Biol Chem. 2006 Sep 29;281(39):29131-40. Epub 2006 Aug 7.

42.

Analysis of the Salmonella typhimurium proteome through environmental response toward infectious conditions.

Adkins JN, Mottaz HM, Norbeck AD, Gustin JK, Rue J, Clauss TR, Purvine SO, Rodland KD, Heffron F, Smith RD.

Mol Cell Proteomics. 2006 Aug;5(8):1450-61. Epub 2006 May 8.

43.

Identification of new secreted effectors in Salmonella enterica serovar Typhimurium.

Geddes K, Worley M, Niemann G, Heffron F.

Infect Immun. 2005 Oct;73(10):6260-71.

45.

SdiA of Salmonella enterica is a LuxR homolog that detects mixed microbial communities.

Michael B, Smith JN, Swift S, Heffron F, Ahmer BM.

J Bacteriol. 2001 Oct;183(19):5733-42.

46.

Identification of bacterial class I accessible proteins by disseminated insertion of class I epitopes.

Ellefson D, van der Velden AW, Parker D, Heffron F.

Methods Enzymol. 2000;326:516-27. No abstract available.

PMID:
11036661
47.

Identification of exported bacterial proteins via gene fusions to Yersinia pseudotuberculosis invasin.

Worley MJ, Heffron F.

Methods Enzymol. 2000;326:97-104. No abstract available.

PMID:
11036636
48.
49.

Salmonella SsrB activates a global regulon of horizontally acquired genes.

Worley MJ, Ching KH, Heffron F.

Mol Microbiol. 2000 May;36(3):749-61.

50.

Salmonella typhimurium recognition of intestinal environments: response

Ahmer BM, Heffron F.

Trends Microbiol. 1999 Jun;7(6):222-3. No abstract available.

PMID:
10366857

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