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Items: 16


Benchmarking variant identification tools for plant diversity discovery.

Wu X, Heffelfinger C, Zhao H, Dellaporta SL.

BMC Genomics. 2019 Sep 9;20(1):701. doi: 10.1186/s12864-019-6057-7.


Translocation of a parthenogenesis gene candidate to an alternate carrier chromosome in apomictic Brachiaria humidicola.

Worthington M, Ebina M, Yamanaka N, Heffelfinger C, Quintero C, Zapata YP, Perez JG, Selvaraj M, Ishitani M, Duitama J, de la Hoz JF, Rao I, Dellaporta S, Tohme J, Arango J.

BMC Genomics. 2019 Jan 14;20(1):41. doi: 10.1186/s12864-018-5392-4.


Genetic Architecture of a Rice Nested Association Mapping Population.

Fragoso CA, Moreno M, Wang Z, Heffelfinger C, Arbelaez LJ, Aguirre JA, Franco N, Romero LE, Labadie K, Zhao H, Dellaporta SL, Lorieux M.

G3 (Bethesda). 2017 Jun 7;7(6):1913-1926. doi: 10.1534/g3.117.041608.


Constructing linkage maps in the genomics era with MapDisto 2.0.

Heffelfinger C, Fragoso CA, Lorieux M.

Bioinformatics. 2017 Jul 15;33(14):2224-2225. doi: 10.1093/bioinformatics/btx177.


Control of sexuality by the sk1-encoded UDP-glycosyltransferase of maize.

Hayward AP, Moreno MA, Howard TP 3rd, Hague J, Nelson K, Heffelfinger C, Romero S, Kausch AP, Glauser G, Acosta IF, Mottinger JP, Dellaporta SL.

Sci Adv. 2016 Oct 28;2(10):e1600991. eCollection 2016 Oct.


A Parthenogenesis Gene Candidate and Evidence for Segmental Allopolyploidy in Apomictic Brachiaria decumbens.

Worthington M, Heffelfinger C, Bernal D, Quintero C, Zapata YP, Perez JG, De Vega J, Miles J, Dellaporta S, Tohme J.

Genetics. 2016 Jul;203(3):1117-32. doi: 10.1534/genetics.116.190314. Epub 2016 May 20.


Genomic and Secondary Metabolite Analyses of Streptomyces sp. 2AW Provide Insight into the Evolution of the Cycloheximide Pathway.

Stulberg ER, Lozano GL, Morin JB, Park H, Baraban EG, Mlot C, Heffelfinger C, Phillips GM, Rush JS, Phillips AJ, Broderick NA, Thomas MG, Stabb EV, Handelsman J.

Front Microbiol. 2016 May 3;7:573. doi: 10.3389/fmicb.2016.00573. eCollection 2016.


A resistance locus in the American heirloom rice variety Carolina Gold Select is triggered by TAL effectors with diverse predicted targets and is effective against African strains of Xanthomonas oryzae pv. oryzicola.

Triplett LR, Cohen SP, Heffelfinger C, Schmidt CL, Huerta AI, Tekete C, Verdier V, Bogdanove AJ, Leach JE.

Plant J. 2016 Sep;87(5):472-83. doi: 10.1111/tpj.13212. Epub 2016 Aug 2.


In situ embryo rescue for generation of wide intra- and interspecific hybrids of Panicum virgatum L.

Kausch AP, Tilelli M, Hague J, Heffelfinger C, Cunha D, Moreno M, Dellaporta SL, Nelson K.

Plant Biotechnol J. 2016 Nov;14(11):2168-2175. doi: 10.1111/pbi.12573. Epub 2016 Jun 1.


Imputing Genotypes in Biallelic Populations from Low-Coverage Sequence Data.

Fragoso CA, Heffelfinger C, Zhao H, Dellaporta SL.

Genetics. 2016 Feb;202(2):487-95. doi: 10.1534/genetics.115.182071. Epub 2015 Dec 29.


Flexible and scalable genotyping-by-sequencing strategies for population studies.

Heffelfinger C, Fragoso CA, Moreno MA, Overton JD, Mottinger JP, Zhao H, Tohme J, Dellaporta SL.

BMC Genomics. 2014 Nov 18;15:979. doi: 10.1186/1471-2164-15-979.


Haplotype structure and positive selection at TLR1.

Heffelfinger C, Pakstis AJ, Speed WC, Clark AP, Haigh E, Fang R, Furtado MR, Kidd KK, Snyder MP.

Eur J Hum Genet. 2014 Apr;22(4):551-7. doi: 10.1038/ejhg.2013.194. Epub 2013 Sep 4.


Worldwide population variation and haplotype analysis at the serotonin transporter gene SLC6A4 and implications for association studies.

Murdoch JD, Speed WC, Pakstis AJ, Heffelfinger CE, Kidd KK.

Biol Psychiatry. 2013 Dec 15;74(12):879-89. doi: 10.1016/j.biopsych.2013.02.006. Epub 2013 Mar 16.


Correlation of Global MicroRNA Expression With Basal Cell Carcinoma Subtype.

Heffelfinger C, Ouyang Z, Engberg A, Leffell DJ, Hanlon AM, Gordon PB, Zheng W, Zhao H, Snyder MP, Bale AE.

G3 (Bethesda). 2012 Feb;2(2):279-86. doi: 10.1534/g3.111.001115. Epub 2012 Feb 1.


Variation in transcription factor binding among humans.

Kasowski M, Grubert F, Heffelfinger C, Hariharan M, Asabere A, Waszak SM, Habegger L, Rozowsky J, Shi M, Urban AE, Hong MY, Karczewski KJ, Huber W, Weissman SM, Gerstein MB, Korbel JO, Snyder M.

Science. 2010 Apr 9;328(5975):232-5. doi: 10.1126/science.1183621. Epub 2010 Mar 18.


A high throughput embryonic stem cell screen identifies Oct-2 as a bifunctional regulator of neuronal differentiation.

Theodorou E, Dalembert G, Heffelfinger C, White E, Weissman S, Corcoran L, Snyder M.

Genes Dev. 2009 Mar 1;23(5):575-88. doi: 10.1101/gad.1772509.

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