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Items: 1 to 50 of 60

1.

Single-Shot Capillary Zone Electrophoresis-Tandem Mass Spectrometry Produces over 4400 Phosphopeptide Identifications from a 220 ng Sample.

Zhang Z, Hebert AS, Westphall MS, Coon JJ, Dovichi NJ.

J Proteome Res. 2019 Aug 2;18(8):3166-3173. doi: 10.1021/acs.jproteome.9b00244. Epub 2019 Jun 26.

PMID:
31180221
2.

Capturing site-specific heterogeneity with large-scale N-glycoproteome analysis.

Riley NM, Hebert AS, Westphall MS, Coon JJ.

Nat Commun. 2019 Mar 21;10(1):1311. doi: 10.1038/s41467-019-09222-w.

3.

Systems-Level Analysis of Oxygen Exposure in Zymomonas mobilis: Implications for Isoprenoid Production.

Martien JI, Hebert AS, Stevenson DM, Regner MR, Khana DB, Coon JJ, Amador-Noguez D.

mSystems. 2019 Feb 12;4(1). pii: e00284-18. doi: 10.1128/mSystems.00284-18. eCollection 2019 Jan-Feb.

4.

Proteomic Atlas of the Human Brain in Alzheimer's Disease.

McKetney J, Runde RM, Hebert AS, Salamat S, Roy S, Coon JJ.

J Proteome Res. 2019 Mar 1;18(3):1380-1391. doi: 10.1021/acs.jproteome.9b00004. Epub 2019 Feb 20.

PMID:
30735395
5.

OptSSeq explores enzyme expression and function landscapes to maximize isobutanol production rate.

Ghosh IN, Martien J, Hebert AS, Zhang Y, Coon JJ, Amador-Noguez D, Landick R.

Metab Eng. 2019 Mar;52:324-340. doi: 10.1016/j.ymben.2018.12.008. Epub 2018 Dec 27.

6.

Author Correction: Phosphorylation Dynamics Dominate the Regulated Proteome during Early Xenopus Development.

Peuchen EH, Cox OF, Sun L, Hebert AS, Coon JJ, Champion MM, Dovichi NJ, Huber PW.

Sci Rep. 2018 Nov 21;8(1):17393. doi: 10.1038/s41598-018-35442-z.

8.

Ultra-High Pressure (>30,000 psi) Packing of Capillary Columns Enhancing Depth of Shotgun Proteomic Analyses.

Shishkova E, Hebert AS, Westphall MS, Coon JJ.

Anal Chem. 2018 Oct 2;90(19):11503-11508. doi: 10.1021/acs.analchem.8b02766. Epub 2018 Sep 14.

PMID:
30179449
9.

Comprehensive Single-Shot Proteomics with FAIMS on a Hybrid Orbitrap Mass Spectrometer.

Hebert AS, Prasad S, Belford MW, Bailey DJ, McAlister GC, Abbatiello SE, Huguet R, Wouters ER, Dunyach JJ, Brademan DR, Westphall MS, Coon JJ.

Anal Chem. 2018 Aug 7;90(15):9529-9537. doi: 10.1021/acs.analchem.8b02233. Epub 2018 Jul 18.

10.

Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and 2032.

Yang S, Vera JM, Grass J, Savvakis G, Moskvin OV, Yang Y, McIlwain SJ, Lyu Y, Zinonos I, Hebert AS, Coon JJ, Bates DM, Sato TK, Brown SD, Himmel ME, Zhang M, Landick R, Pappas KM, Zhang Y.

Biotechnol Biofuels. 2018 May 2;11:125. doi: 10.1186/s13068-018-1116-x. eCollection 2018.

11.

Proteomic and Phosphoproteomic Changes Induced by Prolonged Activation of Human Eosinophils with IL-3.

Esnault S, Hebert AS, Jarjour NN, Coon JJ, Mosher DF.

J Proteome Res. 2018 Jun 1;17(6):2102-2111. doi: 10.1021/acs.jproteome.8b00057. Epub 2018 May 4.

12.

Expression of novel "LOCGEF" isoforms of ARHGEF18 in eosinophils.

Turton KB, Wilkerson EM, Hebert AS, Fogerty FJ, Schira HM, Botros FE, Coon JJ, Mosher DF.

J Leukoc Biol. 2018 Jul;104(1):135-145. doi: 10.1002/JLB.2MA1017-418RR. Epub 2018 Mar 30.

13.

Islet proteomics reveals genetic variation in dopamine production resulting in altered insulin secretion.

Mitok KA, Freiberger EC, Schueler KL, Rabaglia ME, Stapleton DS, Kwiecien NW, Malec PA, Hebert AS, Broman AT, Kennedy RT, Keller MP, Coon JJ, Attie AD.

J Biol Chem. 2018 Apr 20;293(16):5860-5877. doi: 10.1074/jbc.RA117.001102. Epub 2018 Mar 1.

14.

Multiplexed proteome analysis with neutron-encoded stable isotope labeling in cells and mice.

Overmyer KA, Tyanova S, Hebert AS, Westphall MS, Cox J, Coon JJ.

Nat Protoc. 2018 Jan;13(1):293-306. doi: 10.1038/nprot.2017.121. Epub 2018 Jan 11.

15.

Improved Precursor Characterization for Data-Dependent Mass Spectrometry.

Hebert AS, Thöing C, Riley NM, Kwiecien NW, Shiskova E, Huguet R, Cardasis HL, Kuehn A, Eliuk S, Zabrouskov V, Westphall MS, McAlister GC, Coon JJ.

Anal Chem. 2018 Feb 6;90(3):2333-2340. doi: 10.1021/acs.analchem.7b04808. Epub 2018 Jan 11.

16.

A Molecular Portrait of De Novo Genes in Yeasts.

Vakirlis N, Hebert AS, Opulente DA, Achaz G, Hittinger CT, Fischer G, Coon JJ, Lafontaine I.

Mol Biol Evol. 2018 Mar 1;35(3):631-645. doi: 10.1093/molbev/msx315.

17.

Conserved Lipid and Small-Molecule Modulation of COQ8 Reveals Regulation of the Ancient Kinase-like UbiB Family.

Reidenbach AG, Kemmerer ZA, Aydin D, Jochem A, McDevitt MT, Hutchins PD, Stark JL, Stefely JA, Reddy T, Hebert AS, Wilkerson EM, Johnson IE, Bingman CA, Markley JL, Coon JJ, Dal Peraro M, Pagliarini DJ.

Cell Chem Biol. 2018 Feb 15;25(2):154-165.e11. doi: 10.1016/j.chembiol.2017.11.001. Epub 2017 Nov 30.

18.

Phosphorylation Dynamics Dominate the Regulated Proteome during Early Xenopus Development.

Peuchen EH, Cox OF, Sun L, Hebert AS, Coon JJ, Champion MM, Dovichi NJ, Huber PW.

Sci Rep. 2017 Nov 15;7(1):15647. doi: 10.1038/s41598-017-15936-y. Erratum in: Sci Rep. 2018 Nov 21;8(1):17393.

19.

Proteomics of Eosinophil Activation.

Mosher DF, Wilkerson EM, Turton KB, Hebert AS, Coon JJ.

Front Med (Lausanne). 2017 Sep 29;4:159. doi: 10.3389/fmed.2017.00159. eCollection 2017. Review.

20.

Gender Diversity in a STEM Subfield - Analysis of a Large Scientific Society and Its Annual Conferences.

Shishkova E, Kwiecien NW, Hebert AS, Westphall MS, Prenni JE, Coon JJ.

J Am Soc Mass Spectrom. 2017 Dec;28(12):2523-2531. doi: 10.1007/s13361-017-1803-z. Epub 2017 Sep 26.

21.

A Split-Abl Kinase for Direct Activation in Cells.

Diaz JE, Morgan CW, Minogue CE, Hebert AS, Coon JJ, Wells JA.

Cell Chem Biol. 2017 Oct 19;24(10):1250-1258.e4. doi: 10.1016/j.chembiol.2017.08.007. Epub 2017 Sep 14.

22.

GATA Factor-Regulated Samd14 Enhancer Confers Red Blood Cell Regeneration and Survival in Severe Anemia.

Hewitt KJ, Katsumura KR, Matson DR, Devadas P, Tanimura N, Hebert AS, Coon JJ, Kim JS, Dewey CN, Keles S, Hao S, Paulson RF, Bresnick EH.

Dev Cell. 2017 Aug 7;42(3):213-225.e4. doi: 10.1016/j.devcel.2017.07.009.

23.

Erythropoietin signaling regulates heme biosynthesis.

Chung J, Wittig JG, Ghamari A, Maeda M, Dailey TA, Bergonia H, Kafina MD, Coughlin EE, Minogue CE, Hebert AS, Li L, Kaplan J, Lodish HF, Bauer DE, Orkin SH, Cantor AB, Maeda T, Phillips JD, Coon JJ, Pagliarini DJ, Dailey HA, Paw BH.

Elife. 2017 May 29;6. pii: e24767. doi: 10.7554/eLife.24767.

24.

A map of the phosphoproteomic alterations that occur after a bout of maximal-intensity contractions.

Potts GK, McNally RM, Blanco R, You JS, Hebert AS, Westphall MS, Coon JJ, Hornberger TA.

J Physiol. 2017 Aug 1;595(15):5209-5226. doi: 10.1113/JP273904. Epub 2017 Jul 4. Erratum in: J Physiol. 2019 Feb;597(3):967-968.

25.

Global mapping of CARM1 substrates defines enzyme specificity and substrate recognition.

Shishkova E, Zeng H, Liu F, Kwiecien NW, Hebert AS, Coon JJ, Xu W.

Nat Commun. 2017 May 24;8:15571. doi: 10.1038/ncomms15571.

26.

Phosphoproteomics with Activated Ion Electron Transfer Dissociation.

Riley NM, Hebert AS, Dürnberger G, Stanek F, Mechtler K, Westphall MS, Coon JJ.

Anal Chem. 2017 Jun 20;89(12):6367-6376. doi: 10.1021/acs.analchem.7b00212. Epub 2017 Apr 17.

27.

Implementation of Activated Ion Electron Transfer Dissociation on a Quadrupole-Orbitrap-Linear Ion Trap Hybrid Mass Spectrometer.

Riley NM, Westphall MS, Hebert AS, Coon JJ.

Anal Chem. 2017 Jun 20;89(12):6358-6366. doi: 10.1021/acs.analchem.7b00213. Epub 2017 Apr 17.

28.

Correction: Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae.

Sato TK, Tremaine M, Parreiras LS, Hebert AS, Myers KS, Higbee AJ, Sardi M, McIlwain SJ, Ong IM, Breuer RJ, Narasimhan RA, McGee MA, Dickinson Q, La Reau A, Xie D, Tian M, Piotrowski JS, Reed JL, Zhang Y, Coon JJ, Hittinger CT, Gasch AP, Landick R.

PLoS Genet. 2016 Nov 9;12(11):e1006447. doi: 10.1371/journal.pgen.1006447. eCollection 2016 Nov.

29.

Mitochondrial protein functions elucidated by multi-omic mass spectrometry profiling.

Stefely JA, Kwiecien NW, Freiberger EC, Richards AL, Jochem A, Rush MJP, Ulbrich A, Robinson KP, Hutchins PD, Veling MT, Guo X, Kemmerer ZA, Connors KJ, Trujillo EA, Sokol J, Marx H, Westphall MS, Hebert AS, Pagliarini DJ, Coon JJ.

Nat Biotechnol. 2016 Nov;34(11):1191-1197. doi: 10.1038/nbt.3683. Epub 2016 Sep 26.

30.

Now, More Than Ever, Proteomics Needs Better Chromatography.

Shishkova E, Hebert AS, Coon JJ.

Cell Syst. 2016 Oct 26;3(4):321-324. doi: 10.1016/j.cels.2016.10.007.

31.

Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae.

Sato TK, Tremaine M, Parreiras LS, Hebert AS, Myers KS, Higbee AJ, Sardi M, McIlwain SJ, Ong IM, Breuer RJ, Avanasi Narasimhan R, McGee MA, Dickinson Q, La Reau A, Xie D, Tian M, Reed JL, Zhang Y, Coon JJ, Hittinger CT, Gasch AP, Landick R.

PLoS Genet. 2016 Oct 14;12(10):e1006372. doi: 10.1371/journal.pgen.1006372. eCollection 2016 Oct. Erratum in: PLoS Genet. 2016 Nov 9;12 (11):e1006447.

32.

Cerebellar Ataxia and Coenzyme Q Deficiency through Loss of Unorthodox Kinase Activity.

Stefely JA, Licitra F, Laredj L, Reidenbach AG, Kemmerer ZA, Grangeray A, Jaeg-Ehret T, Minogue CE, Ulbrich A, Hutchins PD, Wilkerson EM, Ruan Z, Aydin D, Hebert AS, Guo X, Freiberger EC, Reutenauer L, Jochem A, Chergova M, Johnson IE, Lohman DC, Rush MJP, Kwiecien NW, Singh PK, Schlagowski AI, Floyd BJ, Forsman U, Sindelar PJ, Westphall MS, Pierrel F, Zoll J, Dal Peraro M, Kannan N, Bingman CA, Coon JJ, Isope P, Puccio H, Pagliarini DJ.

Mol Cell. 2016 Aug 18;63(4):608-620. doi: 10.1016/j.molcel.2016.06.030. Epub 2016 Aug 4.

33.

Valosin-containing protein (VCP)-Adaptor Interactions are Exceptionally Dynamic and Subject to Differential Modulation by a VCP Inhibitor.

Xue L, Blythe EE, Freiberger EC, Mamrosh JL, Hebert AS, Reitsma JM, Hess S, Coon JJ, Deshaies RJ.

Mol Cell Proteomics. 2016 Sep;15(9):2970-86. doi: 10.1074/mcp.M116.061036. Epub 2016 Jul 12.

34.

NeuCode Proteomics Reveals Bap1 Regulation of Metabolism.

Baughman JM, Rose CM, Kolumam G, Webster JD, Wilkerson EM, Merrill AE, Rhoads TW, Noubade R, Katavolos P, Lesch J, Stapleton DS, Rabaglia ME, Schueler KL, Asuncion R, Domeyer M, Zavala-Solorio J, Reich M, DeVoss J, Keller MP, Attie AD, Hebert AS, Westphall MS, Coon JJ, Kirkpatrick DS, Dey A.

Cell Rep. 2016 Jul 12;16(2):583-595. doi: 10.1016/j.celrep.2016.05.096. Epub 2016 Jun 30.

35.

Proteomics Moves into the Fast Lane.

Riley NM, Hebert AS, Coon JJ.

Cell Syst. 2016 Mar 23;2(3):142-3. doi: 10.1016/j.cels.2016.03.002. Epub 2016 Mar 23.

36.

The Peripheral Blood Eosinophil Proteome.

Wilkerson EM, Johansson MW, Hebert AS, Westphall MS, Mathur SK, Jarjour NN, Schwantes EA, Mosher DF, Coon JJ.

J Proteome Res. 2016 May 6;15(5):1524-33. doi: 10.1021/acs.jproteome.6b00006. Epub 2016 Apr 1.

37.

Neucode Labels for Multiplexed, Absolute Protein Quantification.

Potts GK, Voigt EA, Bailey DJ, Rose CM, Westphall MS, Hebert AS, Yin J, Coon JJ.

Anal Chem. 2016 Mar 15;88(6):3295-303. doi: 10.1021/acs.analchem.5b04773. Epub 2016 Feb 25.

38.

Protein Composition of Infectious Spores Reveals Novel Sexual Development and Germination Factors in Cryptococcus.

Huang M, Hebert AS, Coon JJ, Hull CM.

PLoS Genet. 2015 Aug 27;11(8):e1005490. doi: 10.1371/journal.pgen.1005490. eCollection 2015 Aug.

39.

The Negative Mode Proteome with Activated Ion Negative Electron Transfer Dissociation (AI-NETD).

Riley NM, Rush MJ, Rose CM, Richards AL, Kwiecien NW, Bailey DJ, Hebert AS, Westphall MS, Coon JJ.

Mol Cell Proteomics. 2015 Oct;14(10):2644-60. doi: 10.1074/mcp.M115.049726. Epub 2015 Jul 20.

40.

High-resolution filtering for improved small molecule identification via GC/MS.

Kwiecien NW, Bailey DJ, Rush MJ, Cole JS, Ulbrich A, Hebert AS, Westphall MS, Coon JJ.

Anal Chem. 2015 Aug 18;87(16):8328-35. doi: 10.1021/acs.analchem.5b01503. Epub 2015 Aug 7.

41.

Coupling capillary zone electrophoresis with electron transfer dissociation and activated ion electron transfer dissociation for top-down proteomics.

Zhao Y, Riley NM, Sun L, Hebert AS, Yan X, Westphall MS, Rush MJ, Zhu G, Champion MM, Mba Medie F, Champion PA, Coon JJ, Dovichi NJ.

Anal Chem. 2015;87(10):5422-9. doi: 10.1021/acs.analchem.5b00883. Epub 2015 May 6.

42.

One-hour proteome analysis in yeast.

Richards AL, Hebert AS, Ulbrich A, Bailey DJ, Coughlin EE, Westphall MS, Coon JJ.

Nat Protoc. 2015 May;10(5):701-14. doi: 10.1038/nprot.2015.040. Epub 2015 Apr 9.

43.

Multiplexed quantification for data-independent acquisition.

Minogue CE, Hebert AS, Rensvold JW, Westphall MS, Pagliarini DJ, Coon JJ.

Anal Chem. 2015 Mar 3;87(5):2570-5. doi: 10.1021/ac503593d. Epub 2015 Feb 11.

44.

Over 10,000 peptide identifications from the HeLa proteome by using single-shot capillary zone electrophoresis combined with tandem mass spectrometry.

Sun L, Hebert AS, Yan X, Zhao Y, Westphall MS, Rush MJ, Zhu G, Champion MM, Coon JJ, Dovichi NJ.

Angew Chem Int Ed Engl. 2014 Dec 8;53(50):13931-3. doi: 10.1002/anie.201409075. Epub 2014 Oct 24.

45.

Phosphorylation and degradation of tomosyn-2 de-represses insulin secretion.

Bhatnagar S, Soni MS, Wrighton LS, Hebert AS, Zhou AS, Paul PK, Gregg T, Rabaglia ME, Keller MP, Coon JJ, Attie AD.

J Biol Chem. 2014 Sep 5;289(36):25276-86. doi: 10.1074/jbc.M114.575985. Epub 2014 Jul 7.

46.

NeuCode labels for relative protein quantification.

Merrill AE, Hebert AS, MacGilvray ME, Rose CM, Bailey DJ, Bradley JC, Wood WW, El Masri M, Westphall MS, Gasch AP, Coon JJ.

Mol Cell Proteomics. 2014 Sep;13(9):2503-12. doi: 10.1074/mcp.M114.040287. Epub 2014 Jun 17.

47.

Mitochondrial DNA variant in COX1 subunit significantly alters energy metabolism of geographically divergent wild isolates in Caenorhabditis elegans.

Dingley SD, Polyak E, Ostrovsky J, Srinivasan S, Lee I, Rosenfeld AB, Tsukikawa M, Xiao R, Selak MA, Coon JJ, Hebert AS, Grimsrud PA, Kwon YJ, Pagliarini DJ, Gai X, Schurr TG, Hüttemann M, Nakamaru-Ogiso E, Falk MJ.

J Mol Biol. 2014 May 29;426(11):2199-216. doi: 10.1016/j.jmb.2014.02.009. Epub 2014 Feb 14.

48.

Neutron-encoded mass signatures for quantitative top-down proteomics.

Rhoads TW, Rose CM, Bailey DJ, Riley NM, Molden RC, Nestler AJ, Merrill AE, Smith LM, Hebert AS, Westphall MS, Pagliarini DJ, Garcia BA, Coon JJ.

Anal Chem. 2014 Mar 4;86(5):2314-9. doi: 10.1021/ac403579s. Epub 2014 Feb 19.

49.

Neutron-encoded protein quantification by peptide carbamylation.

Ulbrich A, Merrill AE, Hebert AS, Westphall MS, Keller MP, Attie AD, Coon JJ.

J Am Soc Mass Spectrom. 2014 Jan;25(1):6-9. doi: 10.1007/s13361-013-0765-z. Epub 2013 Oct 29.

50.

The one hour yeast proteome.

Hebert AS, Richards AL, Bailey DJ, Ulbrich A, Coughlin EE, Westphall MS, Coon JJ.

Mol Cell Proteomics. 2014 Jan;13(1):339-47. doi: 10.1074/mcp.M113.034769. Epub 2013 Oct 19.

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