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Items: 10

1.

Reproducible big data science: A case study in continuous FAIRness.

Madduri R, Chard K, D'Arcy M, Jung SC, Rodriguez A, Sulakhe D, Deutsch E, Funk C, Heavner B, Richards M, Shannon P, Glusman G, Price N, Kesselman C, Foster I.

PLoS One. 2019 Apr 11;14(4):e0213013. doi: 10.1371/journal.pone.0213013. eCollection 2019.

2.

Combining inferred regulatory and reconstructed metabolic networks enhances phenotype prediction in yeast.

Wang Z, Danziger SA, Heavner BD, Ma S, Smith JJ, Li S, Herricks T, Simeonidis E, Baliga NS, Aitchison JD, Price ND.

PLoS Comput Biol. 2017 May 17;13(5):e1005489. doi: 10.1371/journal.pcbi.1005489. eCollection 2017 May.

3.

Human whole genome genotype and transcriptome data for Alzheimer's and other neurodegenerative diseases.

Allen M, Carrasquillo MM, Funk C, Heavner BD, Zou F, Younkin CS, Burgess JD, Chai HS, Crook J, Eddy JA, Li H, Logsdon B, Peters MA, Dang KK, Wang X, Serie D, Wang C, Nguyen T, Lincoln S, Malphrus K, Bisceglio G, Li M, Golde TE, Mangravite LM, Asmann Y, Price ND, Petersen RC, Graff-Radford NR, Dickson DW, Younkin SG, Ertekin-Taner N.

Sci Data. 2016 Oct 11;3:160089. doi: 10.1038/sdata.2016.89.

4.

Predictive Big Data Analytics: A Study of Parkinson's Disease Using Large, Complex, Heterogeneous, Incongruent, Multi-Source and Incomplete Observations.

Dinov ID, Heavner B, Tang M, Glusman G, Chard K, Darcy M, Madduri R, Pa J, Spino C, Kesselman C, Foster I, Deutsch EW, Price ND, Van Horn JD, Ames J, Clark K, Hood L, Hampstead BM, Dauer W, Toga AW.

PLoS One. 2016 Aug 5;11(8):e0157077. doi: 10.1371/journal.pone.0157077. eCollection 2016.

5.

Comparative Analysis of Yeast Metabolic Network Models Highlights Progress, Opportunities for Metabolic Reconstruction.

Heavner BD, Price ND.

PLoS Comput Biol. 2015 Nov 13;11(11):e1004530. doi: 10.1371/journal.pcbi.1004530. eCollection 2015 Nov.

6.

Big biomedical data as the key resource for discovery science.

Toga AW, Foster I, Kesselman C, Madduri R, Chard K, Deutsch EW, Price ND, Glusman G, Heavner BD, Dinov ID, Ames J, Van Horn J, Kramer R, Hood L.

J Am Med Inform Assoc. 2015 Nov;22(6):1126-31. doi: 10.1093/jamia/ocv077. Epub 2015 Jul 21.

7.

Transparency in metabolic network reconstruction enables scalable biological discovery.

Heavner BD, Price ND.

Curr Opin Biotechnol. 2015 Aug;34:105-9. doi: 10.1016/j.copbio.2014.12.010. Epub 2015 Jan 3. Review.

8.

MediaDB: a database of microbial growth conditions in defined media.

Richards MA, Cassen V, Heavner BD, Ajami NE, Herrmann A, Simeonidis E, Price ND.

PLoS One. 2014 Aug 6;9(8):e103548. doi: 10.1371/journal.pone.0103548. eCollection 2014.

9.

Version 6 of the consensus yeast metabolic network refines biochemical coverage and improves model performance.

Heavner BD, Smallbone K, Price ND, Walker LP.

Database (Oxford). 2013 Aug 9;2013:bat059. doi: 10.1093/database/bat059. Print 2013.

10.

Yeast 5 - an expanded reconstruction of the Saccharomyces cerevisiae metabolic network.

Heavner BD, Smallbone K, Barker B, Mendes P, Walker LP.

BMC Syst Biol. 2012 Jun 4;6:55. doi: 10.1186/1752-0509-6-55.

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