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Items: 43

1.

Position-dependent termination and widespread obligatory frameshifting in Euplotes translation.

Lobanov AV, Heaphy SM, Turanov AA, Gerashchenko MV, Pucciarelli S, Devaraj RR, Xie F, Petyuk VA, Smith RD, Klobutcher LA, Atkins JF, Miceli C, Hatfield DL, Baranov PV, Gladyshev VN.

Nat Struct Mol Biol. 2017 Jan;24(1):61-68. doi: 10.1038/nsmb.3330. Epub 2016 Nov 21.

2.

Novel Ciliate Genetic Code Variants Including the Reassignment of All Three Stop Codons to Sense Codons in Condylostoma magnum.

Heaphy SM, Mariotti M, Gladyshev VN, Atkins JF, Baranov PV.

Mol Biol Evol. 2016 Nov;33(11):2885-2889. Epub 2016 Aug 8.

3.

Phylogenetic characterization and novelty of organic sulphur metabolizing genes of Rhodococcus spp. (Eu-32).

Akhtar N, Ghauri MA, Anwar MA, Heaphy S.

Biotechnol Lett. 2015 Apr;37(4):837-47. doi: 10.1007/s10529-014-1736-6. Epub 2014 Dec 10.

PMID:
25491478
4.

GWIPS-viz: development of a ribo-seq genome browser.

Michel AM, Fox G, M Kiran A, De Bo C, O'Connor PB, Heaphy SM, Mullan JP, Donohue CA, Higgins DG, Baranov PV.

Nucleic Acids Res. 2014 Jan;42(Database issue):D859-64. doi: 10.1093/nar/gkt1035. Epub 2013 Oct 31.

5.

Bacterial and archaeal diversity in two hot spring microbial mats from the geothermal region of Tengchong, China.

Pagaling E, Grant WD, Cowan DA, Jones BE, Ma Y, Ventosa A, Heaphy S.

Extremophiles. 2012 Jul;16(4):607-18. doi: 10.1007/s00792-012-0460-1. Epub 2012 May 24.

PMID:
22622647
6.

Phages in nature.

Clokie MR, Millard AD, Letarov AV, Heaphy S.

Bacteriophage. 2011 Jan;1(1):31-45.

7.

Metagenomics and recovery of enzyme genes from alkaline saline environments.

Grant WD, Heaphy S.

Environ Technol. 2010 Sep;31(10):1135-43. doi: 10.1080/09593331003646661. Review.

PMID:
20718296
8.

Microbial biogeography of six salt lakes in Inner Mongolia, China, and a salt lake in Argentina.

Pagaling E, Wang H, Venables M, Wallace A, Grant WD, Cowan DA, Jones BE, Ma Y, Ventosa A, Heaphy S.

Appl Environ Microbiol. 2009 Sep;75(18):5750-60. doi: 10.1128/AEM.00040-09. Epub 2009 Jul 31.

9.

Halorubrum kocurii sp. nov., an archaeon isolated from a saline lake.

GutiƩrrez MC, Castillo AM, Pagaling E, Heaphy S, Kamekura M, Xue Y, Ma Y, Cowan DA, Jones BE, Grant WD, Ventosa A.

Int J Syst Evol Microbiol. 2008 Sep;58(Pt 9):2031-5. doi: 10.1099/ijs.0.65840-0.

PMID:
18768599
10.

Nanoarchaeal 16S rRNA gene sequences are widely dispersed in hyperthermophilic and mesophilic halophilic environments.

Casanueva A, Galada N, Baker GC, Grant WD, Heaphy S, Jones B, Yanhe M, Ventosa A, Blamey J, Cowan DA.

Extremophiles. 2008 Sep;12(5):651-6. doi: 10.1007/s00792-008-0170-x. Epub 2008 Jun 14.

PMID:
18553053
11.

Sequence analysis of an Archaeal virus isolated from a hypersaline lake in Inner Mongolia, China.

Pagaling E, Haigh RD, Grant WD, Cowan DA, Jones BE, Ma Y, Ventosa A, Heaphy S.

BMC Genomics. 2007 Nov 9;8:410.

12.

Caldalkalibacillus thermarum gen. nov., sp. nov., a novel alkalithermophilic bacterium from a hot spring in China.

Xue Y, Zhang X, Zhou C, Zhao Y, Cowan DA, Heaphy S, Grant WD, Jones BE, Ventosa A, Ma Y.

Int J Syst Evol Microbiol. 2006 Jun;56(Pt 6):1217-21.

PMID:
16738094
13.

Phylogenetic analysis of bacterial isolates from man-made high-pH, high-salt environments and identification of gene-cassette-associated open reading frames.

Ghauri MA, Khalid AM, Grant S, Grant WD, Heaphy S.

Curr Microbiol. 2006 Jun;52(6):487-92. Epub 2006 Apr 25.

PMID:
16732461
14.

Identification of eukaryotic open reading frames in metagenomic cDNA libraries made from environmental samples.

Grant S, Grant WD, Cowan DA, Jones BE, Ma Y, Ventosa A, Heaphy S.

Appl Environ Microbiol. 2006 Jan;72(1):135-43.

15.
16.

A phylogenetic analysis of Wadi el Natrun soda lake cellulase enrichment cultures and identification of cellulase genes from these cultures.

Grant S, Sorokin DY, Grant WD, Jones BE, Heaphy S.

Extremophiles. 2004 Oct;8(5):421-9. Epub 2004 Jul 28.

PMID:
15480866
17.

Diversity of Kenyan soda lake alkaliphiles assessed by molecular methods.

Rees HC, Grant WD, Jones BE, Heaphy S.

Extremophiles. 2004 Feb;8(1):63-71. Epub 2003 Oct 29.

PMID:
15064991
18.

Phylogenetic analysis of different isolates of Sulfobacillus spp. isolated from uranium-rich environments and recovery of genes using integron-specific primers.

Ghauri MA, Khalid AM, Grant S, Heaphy S, Grant WD.

Extremophiles. 2003 Oct;7(5):341-5. Epub 2003 Aug 30.

PMID:
12955603
19.

Detecting cellulase and esterase enzyme activities encoded by novel genes present in environmental DNA libraries.

Rees HC, Grant S, Jones B, Grant WD, Heaphy S.

Extremophiles. 2003 Oct;7(5):415-21. Epub 2003 Jul 5.

PMID:
12845554
20.
21.

Nucleotide sequence of the 4.3 kbp BamHI-N fragment of fowlpox virus FP9.

Pollitt E, Skinner MA, Heaphy S.

Virus Genes. 1998;17(1):5-9.

PMID:
9778782
22.

HIV-1 Gag binds specifically to RNA stem-loops in the 5' leader sequence.

Maddison B, Marya P, Heaphy S.

Biochim Biophys Acta. 1998 Jul 9;1398(3):305-14.

PMID:
9655923
23.

The sequence of a cDNA encoding functional murine C1-inhibitor protein.

Russell JA, Whaley K, Heaphy S.

Biochim Biophys Acta. 1997 May 30;1352(2):156-60.

PMID:
9199246
24.

Antiviruses as therapeutic agents: a mathematical analysis of their potential.

Madsen MS, Snelling DF, Heaphy S, Norris V.

J Theor Biol. 1997 Jan 21;184(2):111-6.

PMID:
9059590
25.

Production of non-infectious human immunodeficiency virus-like particles which package specifically viral RNA.

Haddrick M, Han-Liu Z, Lau A, Heaphy S, Cann AJ.

J Virol Methods. 1996 Sep;61(1-2):89-93.

PMID:
8882941
26.

Evidence that a kissing loop structure facilitates genomic RNA dimerisation in HIV-1.

Haddrick M, Lear AL, Cann AJ, Heaphy S.

J Mol Biol. 1996 May 31;259(1):58-68.

PMID:
8648648
27.

A study of the dimerization of Rous sarcoma virus RNA in vitro and in vivo.

Lear AL, Haddrick M, Heaphy S.

Virology. 1995 Sep 10;212(1):47-57.

28.

Designer antiviruses for HIV.

Norris V, Madsen MS, Heaphy S.

Trends Microbiol. 1993 Dec;1(9):355-7.

PMID:
8162427
29.
30.
32.
33.

RNA binding by the tat and rev proteins of HIV-1.

Karn J, Dingwall C, Finch JT, Heaphy S, Gait MJ.

Biochimie. 1991 Jan;73(1):9-16.

PMID:
1903308
34.

HIV-1 tat protein stimulates transcription by binding to a U-rich bulge in the stem of the TAR RNA structure.

Dingwall C, Ernberg I, Gait MJ, Green SM, Heaphy S, Karn J, Lowe AD, Singh M, Skinner MA.

EMBO J. 1990 Dec;9(12):4145-53.

35.

HIV-1 regulator of virion expression (Rev) protein binds to an RNA stem-loop structure located within the Rev response element region.

Heaphy S, Dingwall C, Ernberg I, Gait MJ, Green SM, Karn J, Lowe AD, Singh M, Skinner MA.

Cell. 1990 Feb 23;60(4):685-93.

PMID:
1689218
36.

Direct RNA binding by the rev product of HIV-1.

Walley AJ, Heaphy S, Jones IM.

AIDS. 1989 Dec;3(12):859-61. No abstract available.

PMID:
2517208
37.

Human immunodeficiency virus 1 tat protein binds trans-activation-responsive region (TAR) RNA in vitro.

Dingwall C, Ernberg I, Gait MJ, Green SM, Heaphy S, Karn J, Lowe AD, Singh M, Skinner MA, Valerio R.

Proc Natl Acad Sci U S A. 1989 Sep;86(18):6925-9.

38.
39.

Effect of single amino acid changes in the region of the adenylylation site of T4 RNA ligase.

Heaphy S, Singh M, Gait MJ.

Biochemistry. 1987 Mar 24;26(6):1688-96.

PMID:
3036206
40.

Oligonucleotide-directed misincorporation mutagenesis on single-stranded DNA templates.

Singh M, Heaphy S, Gait MJ.

Protein Eng. 1986 Oct-Nov;1(1):75-6. No abstract available.

PMID:
3507690
41.
42.

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