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Items: 1 to 50 of 88

1.

Analysis of differential expression of glycosyltransferases in healing corneas by glycogene microarrays.

Saravanan C, Cao Z, Head SR, Panjwani N.

Glycobiology. 2019 Feb 1;29(2):188-189. doi: 10.1093/glycob/cwy076. No abstract available.

PMID:
30508096
2.

Loss of GCNT2/I-branched glycans enhances melanoma growth and survival.

Sweeney JG, Liang J, Antonopoulos A, Giovannone N, Kang S, Mondala TS, Head SR, King SL, Tani Y, Brackett D, Dell A, Murphy GF, Haslam SM, Widlund HR, Dimitroff CJ.

Nat Commun. 2018 Aug 22;9(1):3368. doi: 10.1038/s41467-018-05795-0.

3.

A genome-wide survey of mutations in the Jurkat cell line.

Gioia L, Siddique A, Head SR, Salomon DR, Su AI.

BMC Genomics. 2018 May 8;19(1):334. doi: 10.1186/s12864-018-4718-6.

4.

Microdroplet PCR for Highly Multiplexed Targeted Bisulfite Sequencing.

Komori HK, LaMere SA, Hart T, Head SR, Torkamani A, Salomon DR.

Methods Mol Biol. 2018;1708:333-348. doi: 10.1007/978-1-4939-7481-8_17.

PMID:
29224152
5.

Primer Extension, Capture, and On-Bead cDNA Ligation: An Efficient RNAseq Library Prep Method for Determining Reverse Transcription Termination Sites.

Ordoukhanian P, Nichols J, Head SR.

Methods Mol Biol. 2018;1712:253-261. doi: 10.1007/978-1-4939-7514-3_16.

PMID:
29224079
6.

Allele-specific wild-type TP53 expression in the unaffected carrier parent of children with Li-Fraumeni syndrome.

Buzby JS, Williams SA, Schaffer L, Head SR, Nugent DJ.

Cancer Genet. 2017 Feb;211:9-17. doi: 10.1016/j.cancergen.2017.01.001. Epub 2017 Jan 9.

7.

Differential Sensitivity of Target Genes to Translational Repression by miR-17~92.

Jin HY, Oda H, Chen P, Yang C, Zhou X, Kang SG, Valentine E, Kefauver JM, Liao L, Zhang Y, Gonzalez-Martin A, Shepherd J, Morgan GJ, Mondala TS, Head SR, Kim PH, Xiao N, Fu G, Liu WH, Han J, Williamson JR, Xiao C.

PLoS Genet. 2017 Feb 27;13(2):e1006623. doi: 10.1371/journal.pgen.1006623. eCollection 2017 Feb.

8.

Structure and variation of CRISPR and CRISPR-flanking regions in deleted-direct repeat region Mycobacterium tuberculosis complex strains.

Freidlin PJ, Nissan I, Luria A, Goldblatt D, Schaffer L, Kaidar-Shwartz H, Chemtob D, Dveyrin Z, Head SR, Rorman E.

BMC Genomics. 2017 Feb 15;18(1):168. doi: 10.1186/s12864-017-3560-6.

9.

p53-Dependent DNA damage response sensitive to editing-defective tRNA synthetase in zebrafish.

Song Y, Shi Y, Carland TM, Lian S, Sasaki T, Schork NJ, Head SR, Kishi S, Schimmel P.

Proc Natl Acad Sci U S A. 2016 Jul 26;113(30):8460-5. doi: 10.1073/pnas.1608139113. Epub 2016 Jul 8.

10.

Regulatory T-cell-intrinsic amphiregulin is dispensable for suppressive function.

Carney K, Chang YR, Wilson S, Calnan C, Reddy PS, Chan WY, Gilmartin T, Hernandez G, Schaffer L, Head SR, Morley J, de Mestre A, Affleck K, Garden OA.

J Allergy Clin Immunol. 2016 Jun;137(6):1907-1909. doi: 10.1016/j.jaci.2016.01.030. Epub 2016 Mar 31. No abstract available.

11.

Gene Expression in Biopsies of Acute Rejection and Interstitial Fibrosis/Tubular Atrophy Reveals Highly Shared Mechanisms That Correlate With Worse Long-Term Outcomes.

Modena BD, Kurian SM, Gaber LW, Waalen J, Su AI, Gelbart T, Mondala TS, Head SR, Papp S, Heilman R, Friedewald JJ, Flechner SM, Marsh CL, Sung RS, Shidban H, Chan L, Abecassis MM, Salomon DR.

Am J Transplant. 2016 Jul;16(7):1982-98. doi: 10.1111/ajt.13728. Epub 2016 Mar 15.

12.

Transfection of microRNA Mimics Should Be Used with Caution.

Jin HY, Gonzalez-Martin A, Miletic AV, Lai M, Knight S, Sabouri-Ghomi M, Head SR, Macauley MS, Rickert RC, Xiao C.

Front Genet. 2015 Dec 2;6:340. doi: 10.3389/fgene.2015.00340. eCollection 2015.

13.

The Activation-Induced Assembly of an RNA/Protein Interactome Centered on the Splicing Factor U2AF2 Regulates Gene Expression in Human CD4 T Cells.

Whisenant TC, Peralta ER, Aarreberg LD, Gao NJ, Head SR, Ordoukhanian P, Williamson JR, Salomon DR.

PLoS One. 2015 Dec 7;10(12):e0144409. doi: 10.1371/journal.pone.0144409. eCollection 2015.

14.

Phenotypic and Functional Properties of Human Steady State CD14+ and CD1a+ Antigen Presenting Cells and Epidermal Langerhans Cells.

Fehres CM, Bruijns SC, Sotthewes BN, Kalay H, Schaffer L, Head SR, de Gruijl TD, Garcia-Vallejo JJ, van Kooyk Y.

PLoS One. 2015 Nov 25;10(11):e0143519. doi: 10.1371/journal.pone.0143519. eCollection 2015.

15.

Low-Cost Peptide Microarrays for Mapping Continuous Antibody Epitopes.

McBride R, Head SR, Ordoukhanian P, Law M.

Methods Mol Biol. 2016;1352:67-83. doi: 10.1007/978-1-4939-3037-1_6.

PMID:
26490468
16.

Viral Small-RNA Analysis of Bombyx mori Larval Midgut during Persistent and Pathogenic Cytoplasmic Polyhedrosis Virus Infection.

Zografidis A, Van Nieuwerburgh F, Kolliopoulou A, Apostolou-Karampelis K, Head SR, Deforce D, Smagghe G, Swevers L.

J Virol. 2015 Nov;89(22):11473-86. doi: 10.1128/JVI.01695-15. Epub 2015 Sep 2.

17.

ClickSeq: Fragmentation-Free Next-Generation Sequencing via Click Ligation of Adaptors to Stochastically Terminated 3'-Azido cDNAs.

Routh A, Head SR, Ordoukhanian P, Johnson JE.

J Mol Biol. 2015 Aug 14;427(16):2610-6. doi: 10.1016/j.jmb.2015.06.011. Epub 2015 Jun 24.

18.

Erratum to: Detoxifying Escherichia coli for endotoxin-free production of recombinant proteins.

Mamat U, Wilke K, Bramhill D, Schromm AB, Lindner B, Kohl TA, Corchero JL, Villaverde A, Schaffer L, Head SR, Souvignier C, Meredith TC, Woodard RW.

Microb Cell Fact. 2015 Jun 11;14:81. doi: 10.1186/s12934-015-0265-x. No abstract available.

19.

Detoxifying Escherichia coli for endotoxin-free production of recombinant proteins.

Mamat U, Wilke K, Bramhill D, Schromm AB, Lindner B, Kohl TA, Corchero JL, Villaverde A, Schaffer L, Head SR, Souvignier C, Meredith TC, Woodard RW.

Microb Cell Fact. 2015 Apr 16;14:57. doi: 10.1186/s12934-015-0241-5. Erratum in: Microb Cell Fact. 2015;14:81.

20.

IP3 3-kinase B controls hematopoietic stem cell homeostasis and prevents lethal hematopoietic failure in mice.

Siegemund S, Rigaud S, Conche C, Broaten B, Schaffer L, Westernberg L, Head SR, Sauer K.

Blood. 2015 Apr 30;125(18):2786-97. doi: 10.1182/blood-2014-06-583187. Epub 2015 Mar 18.

21.

A novel histone deacetylase complex in the control of transcription and genome stability.

Zilio N, Codlin S, Vashisht AA, Bitton DA, Head SR, Wohlschlegel JA, Bähler J, Boddy MN.

Mol Cell Biol. 2014 Sep 15;34(18):3500-14. doi: 10.1128/MCB.00519-14. Epub 2014 Jul 7.

22.

Molecular classifiers for acute kidney transplant rejection in peripheral blood by whole genome gene expression profiling.

Kurian SM, Williams AN, Gelbart T, Campbell D, Mondala TS, Head SR, Horvath S, Gaber L, Thompson R, Whisenant T, Lin W, Langfelder P, Robison EH, Schaffer RL, Fisher JS, Friedewald J, Flechner SM, Chan LK, Wiseman AC, Shidban H, Mendez R, Heilman R, Abecassis MM, Marsh CL, Salomon DR.

Am J Transplant. 2014 May;14(5):1164-72. doi: 10.1111/ajt.12671. Epub 2014 Apr 11.

23.

An evolutionarily conserved long noncoding RNA TUNA controls pluripotency and neural lineage commitment.

Lin N, Chang KY, Li Z, Gates K, Rana ZA, Dang J, Zhang D, Han T, Yang CS, Cunningham TJ, Head SR, Duester G, Dong PD, Rana TM.

Mol Cell. 2014 Mar 20;53(6):1005-19. doi: 10.1016/j.molcel.2014.01.021. Epub 2014 Feb 13. Erratum in: Mol Cell. 2014 Mar 20;53(6):1067.

24.

Library construction for next-generation sequencing: overviews and challenges.

Head SR, Komori HK, LaMere SA, Whisenant T, Van Nieuwerburgh F, Salomon DR, Ordoukhanian P.

Biotechniques. 2014 Feb 1;56(2):61-4, 66, 68, passim. doi: 10.2144/000114133. eCollection 2014. Review.

25.

Technical variations in low-input RNA-seq methodologies.

Bhargava V, Head SR, Ordoukhanian P, Mercola M, Subramaniam S.

Sci Rep. 2014 Jan 14;4:3678. doi: 10.1038/srep03678.

26.

The long noncoding RNA THRIL regulates TNFα expression through its interaction with hnRNPL.

Li Z, Chao TC, Chang KY, Lin N, Patil VS, Shimizu C, Head SR, Burns JC, Rana TM.

Proc Natl Acad Sci U S A. 2014 Jan 21;111(3):1002-7. doi: 10.1073/pnas.1313768111. Epub 2013 Dec 26.

27.

Differential transcriptome analysis of glandular and filamentous trichomes in Artemisia annua.

Soetaert SS, Van Neste CM, Vandewoestyne ML, Head SR, Goossens A, Van Nieuwerburgh FC, Deforce DL.

BMC Plant Biol. 2013 Dec 20;13:220. doi: 10.1186/1471-2229-13-220.

28.

Optimization of peptide arrays for studying antibodies to hepatitis C virus continuous epitopes.

Ruwona TB, Mcbride R, Chappel R, Head SR, Ordoukhanian P, Burton DR, Law M.

J Immunol Methods. 2014 Jan 15;402(1-2):35-42. doi: 10.1016/j.jim.2013.11.005. Epub 2013 Nov 19.

29.

VHL-dependent regulation of a β-dystroglycan glycoform and glycogene expression in renal cancer.

Aggelis V, Craven RA, Peng J, Harnden P, Schaffer L, Hernandez GE, Head SR, Maher ER, Tonge R, Selby PJ, Banks RE.

Int J Oncol. 2013 Nov;43(5):1368-76. doi: 10.3892/ijo.2013.2066. Epub 2013 Aug 21.

30.

RNA purification and expression analysis using microarrays and RNA deep sequencing.

Head SR, Mondala T, Gelbart T, Ordoukhanian P, Chappel R, Hernandez G, Salomon DR.

Methods Mol Biol. 2013;1034:385-403. doi: 10.1007/978-1-62703-493-7_25.

PMID:
23775753
31.

Genomic meta-analysis of growth factor and integrin pathways in chronic kidney transplant injury.

Dosanjh A, Robison E, Mondala T, Head SR, Salomon DR, Kurian SM.

BMC Genomics. 2013 Apr 23;14:275. doi: 10.1186/1471-2164-14-275.

32.

Noncoding transcription within the Igh distal V(H) region at PAIR elements affects the 3D structure of the Igh locus in pro-B cells.

Verma-Gaur J, Torkamani A, Schaffer L, Head SR, Schork NJ, Feeney AJ.

Proc Natl Acad Sci U S A. 2012 Oct 16;109(42):17004-9. doi: 10.1073/pnas.1208398109. Epub 2012 Oct 1.

33.

Expression of glycogenes in differentiating human NT2N neurons. Downregulation of fucosyltransferase 9 leads to decreased Lewis(x) levels and impaired neurite outgrowth.

Gouveia R, Schaffer L, Papp S, Grammel N, Kandzia S, Head SR, Kleene R, Schachner M, Conradt HS, Costa J.

Biochim Biophys Acta. 2012 Dec;1820(12):2007-19. doi: 10.1016/j.bbagen.2012.09.004. Epub 2012 Sep 19.

PMID:
23000574
34.

Glycophenotypic alterations induced by Pteridium aquilinum in mice gastric mucosa: synergistic effect with Helicobacter pylori infection.

Gomes J, Magalhães A, Carvalho AS, Hernandez GE, Papp SL, Head SR, Michel V, David L, Gärtner F, Touati E, Reis CA.

PLoS One. 2012;7(6):e38353. doi: 10.1371/journal.pone.0038353. Epub 2012 Jun 13.

35.

Illumina mate-paired DNA sequencing-library preparation using Cre-Lox recombination.

Van Nieuwerburgh F, Thompson RC, Ledesma J, Deforce D, Gaasterland T, Ordoukhanian P, Head SR.

Nucleic Acids Res. 2012 Feb;40(3):e24. doi: 10.1093/nar/gkr1000. Epub 2011 Nov 29.

36.

Quantitative bias in Illumina TruSeq and a novel post amplification barcoding strategy for multiplexed DNA and small RNA deep sequencing.

Van Nieuwerburgh F, Soetaert S, Podshivalova K, Ay-Lin Wang E, Schaffer L, Deforce D, Salomon DR, Head SR, Ordoukhanian P.

PLoS One. 2011;6(10):e26969. doi: 10.1371/journal.pone.0026969. Epub 2011 Oct 28.

37.

Genome-wide identification of Bcl11b gene targets reveals role in brain-derived neurotrophic factor signaling.

Tang B, Di Lena P, Schaffer L, Head SR, Baldi P, Thomas EA.

PLoS One. 2011;6(9):e23691. doi: 10.1371/journal.pone.0023691. Epub 2011 Sep 1.

38.

MicroRNA regulation of molecular networks mapped by global microRNA, mRNA, and protein expression in activated T lymphocytes.

Grigoryev YA, Kurian SM, Hart T, Nakorchevsky AA, Chen C, Campbell D, Head SR, Yates JR 3rd, Salomon DR.

J Immunol. 2011 Sep 1;187(5):2233-43. doi: 10.4049/jimmunol.1101233. Epub 2011 Jul 25.

39.

Application of microdroplet PCR for large-scale targeted bisulfite sequencing.

Komori HK, LaMere SA, Torkamani A, Hart GT, Kotsopoulos S, Warner J, Samuels ML, Olson J, Head SR, Ordoukhanian P, Lee PL, Link DR, Salomon DR.

Genome Res. 2011 Oct;21(10):1738-45. doi: 10.1101/gr.116863.110. Epub 2011 Jul 14.

40.

Directional RNA deep sequencing sheds new light on the transcriptional response of Anabaena sp. strain PCC 7120 to combined-nitrogen deprivation.

Flaherty BL, Van Nieuwerburgh F, Head SR, Golden JW.

BMC Genomics. 2011 Jun 28;12:332. doi: 10.1186/1471-2164-12-332.

41.

Method for improved Illumina sequencing library preparation using NuGEN Ovation RNA-Seq System.

Head SR, Komori HK, Hart GT, Shimashita J, Schaffer L, Salomon DR, Ordoukhanian PT.

Biotechniques. 2011 Mar;50(3):177-80. doi: 10.2144/000113613.

42.

Identification and molecular analysis of glycosaminoglycans in cutaneous lupus erythematosus and dermatomyositis.

Chang LM, Maheshwari P, Werth S, Schaffer L, Head SR, Kovarik C, Werth VP.

J Histochem Cytochem. 2011 Mar;59(3):336-45. doi: 10.1369/0022155410398000. Epub 2011 Jan 12.

43.

Rad3 decorates critical chromosomal domains with gammaH2A to protect genome integrity during S-Phase in fission yeast.

Rozenzhak S, Mejía-Ramírez E, Williams JS, Schaffer L, Hammond JA, Head SR, Russell P.

PLoS Genet. 2010 Jul 22;6(7):e1001032. doi: 10.1371/journal.pgen.1001032.

44.

Production and application of glycan microarrays.

Busch J, McBride R, Head SR.

Methods Mol Biol. 2010;632:269-82. doi: 10.1007/978-1-60761-663-4_17.

PMID:
20217584
45.

Multicenter clinical sample collection for microarray analysis.

Mondala TS, Salomon DR, Head SR.

Methods Mol Biol. 2010;632:1-26. doi: 10.1007/978-1-60761-663-4_1.

PMID:
20217568
46.

Uncovering the interplay between CD8, CD4 and antibody responses to complex pathogens.

Moutaftsi M, Tscharke DC, Vaughan K, Koelle DM, Stern L, Calvo-Calle M, Ennis F, Terajima M, Sutter G, Crotty S, Drexler I, Franchini G, Yewdell JW, Head SR, Blum J, Peters B, Sette A.

Future Microbiol. 2010 Feb;5(2):221-39. doi: 10.2217/fmb.09.110. Review.

47.

Molecular mechanisms of chronic kidney transplant rejection via large-scale proteogenomic analysis of tissue biopsies.

Nakorchevsky A, Hewel JA, Kurian SM, Mondala TS, Campbell D, Head SR, Marsh CL, Yates JR 3rd, Salomon DR.

J Am Soc Nephrol. 2010 Feb;21(2):362-73. doi: 10.1681/ASN.2009060628. Epub 2010 Jan 21.

48.

Whole genome transcript profiling from fingerstick blood samples: a comparison and feasibility study.

Robison EH, Mondala TS, Williams AR, Head SR, Salomon DR, Kurian SM.

BMC Genomics. 2009 Dec 17;10:617. doi: 10.1186/1471-2164-10-617.

49.

Genome-wide analysis of immune activation in human T and B cells reveals distinct classes of alternatively spliced genes.

Grigoryev YA, Kurian SM, Nakorchevskiy AA, Burke JP, Campbell D, Head SR, Deng J, Kantor AB, Yates JR 3rd, Salomon DR.

PLoS One. 2009 Nov 19;4(11):e7906. doi: 10.1371/journal.pone.0007906.

50.

Genetics of platelet reactivity in normal, healthy individuals.

Kunicki TJ, Williams SA, Salomon DR, Harrison P, Crisler P, Nakagawa P, Mondala TS, Head SR, Nugent DJ.

J Thromb Haemost. 2009 Dec;7(12):2116-22. doi: 10.1111/j.1538-7836.2009.03610.x. Epub 2009 Sep 9.

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