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Items: 1 to 50 of 258

1.

Conservation and global distribution of non-canonical antigens in Enterotoxigenic Escherichia coli.

Kuhlmann FM, Martin J, Hazen TH, Vickers TJ, Pashos M, Okhuysen PC, Gómez-Duarte OG, Cebelinski E, Boxrud D, Del Canto F, Vidal R, Qadri F, Mitreva M, Rasko DA, Fleckenstein JM.

PLoS Negl Trop Dis. 2019 Nov 22;13(11):e0007825. doi: 10.1371/journal.pntd.0007825. eCollection 2019 Nov.

2.

Comparative genomic analysis and molecular examination of the diversity of enterotoxigenic Escherichia coli isolates from Chile.

Rasko DA, Del Canto F, Luo Q, Fleckenstein JM, Vidal R, Hazen TH.

PLoS Negl Trop Dis. 2019 Nov 20;13(11):e0007828. doi: 10.1371/journal.pntd.0007828. [Epub ahead of print]

3.

Examination of 388 Staphylococcus aureus Isolates from Intensive Care Unit Patients.

Adedrian T, Hitchcock S, O'Hara LM, Michalski JM, Johnson JK, Calfee DP, Miller LG, Hazen TH, Rasko DA, Harris AD.

Microbiol Resour Announc. 2019 Nov 14;8(46). pii: e01246-19. doi: 10.1128/MRA.01246-19.

4.

Unconventional Oil and Gas Energy Systems: An Unidentified Hotspot of Antimicrobial Resistance?

Campa MF, Wolfe AK, Techtmann SM, Harik AM, Hazen TC.

Front Microbiol. 2019 Oct 18;10:2392. doi: 10.3389/fmicb.2019.02392. eCollection 2019.

5.

Surface Water Microbial Community Response to the Biocide 2,2-Dibromo-3-Nitrilopropionamide, Used in Unconventional Oil and Gas Extraction.

Campa MF, Techtmann SM, Ladd MP, Yan J, Patterson M, Garcia de Matos Amaral A, Carter KE, Ulrich N, Grant CJ, Hettich RL, Lamendella R, Hazen TC.

Appl Environ Microbiol. 2019 Oct 16;85(21). pii: e01336-19. doi: 10.1128/AEM.01336-19. Print 2019 Nov 1.

6.

ICU Patient Family Stress Recovery During Breaks in a Hospital Garden and Indoor Environments.

Ulrich RS, Cordoza M, Gardiner SK, Manulik BJ, Fitzpatrick PS, Hazen TM, Perkins RS.

HERD. 2019 Aug 7:1937586719867157. doi: 10.1177/1937586719867157. [Epub ahead of print]

PMID:
31390887
7.

High spatiotemporal variability of bacterial diversity over short time scales with unique hydrochemical associations within a shallow aquifer.

Zelaya AJ, Parker AE, Bailey KL, Zhang P, Van Nostrand J, Ning D, Elias DA, Zhou J, Hazen TC, Arkin AP, Fields MW.

Water Res. 2019 Nov 1;164:114917. doi: 10.1016/j.watres.2019.114917. Epub 2019 Jul 26.

PMID:
31387058
8.
9.

Probing the active fraction of soil microbiomes using BONCAT-FACS.

Couradeau E, Sasse J, Goudeau D, Nath N, Hazen TC, Bowen BP, Chakraborty R, Malmstrom RR, Northen TR.

Nat Commun. 2019 Jun 24;10(1):2770. doi: 10.1038/s41467-019-10542-0.

10.

Genetic changes associated with the temporal shift in invasive non-typhoidal Salmonella serovars in Bamako Mali.

Bornstein K, Tennant SM, Hazen TH, Sorkin JD, Tapia MD, Sow SO, Onwuchekwa U, Levine MM, Rasko DA.

PLoS Negl Trop Dis. 2019 Jun 6;13(6):e0007297. doi: 10.1371/journal.pntd.0007297. eCollection 2019 Jun.

11.

Oil Hydrocarbon Degradation by Caspian Sea Microbial Communities.

Miller JI, Techtmann S, Fortney J, Mahmoudi N, Joyner D, Liu J, Olesen S, Alm E, Fernandez A, Gardinali P, GaraJayeva N, Askerov FS, Hazen TC.

Front Microbiol. 2019 May 9;10:995. doi: 10.3389/fmicb.2019.00995. eCollection 2019.

12.

Genome and Functional Characterization of Colonization Factor Antigen I- and CS6-Encoding Heat-Stable Enterotoxin-Only Enterotoxigenic Escherichia coli Reveals Lineage and Geographic Variation.

Hazen TH, Nagaraj S, Sen S, Permala-Booth J, Del Canto F, Vidal R, Barry EM, Bitoun JP, Chen WH, Tennant SM, Rasko DA.

mSystems. 2019 Jan 15;4(1). pii: e00329-18. doi: 10.1128/mSystems.00329-18. eCollection 2019 Jan-Feb.

13.

Large Circular Plasmids from Groundwater Plasmidomes Span Multiple Incompatibility Groups and Are Enriched in Multimetal Resistance Genes.

Kothari A, Wu YW, Chandonia JM, Charrier M, Rajeev L, Rocha AM, Joyner DC, Hazen TC, Singer SW, Mukhopadhyay A.

MBio. 2019 Feb 26;10(1). pii: e02899-18. doi: 10.1128/mBio.02899-18.

14.

Colonization factors among enterotoxigenic Escherichia coli isolates from children with moderate-to-severe diarrhea and from matched controls in the Global Enteric Multicenter Study (GEMS).

Vidal RM, Muhsen K, Tennant SM, Svennerholm AM, Sow SO, Sur D, Zaidi AKM, Faruque ASG, Saha D, Adegbola R, Hossain MJ, Alonso PL, Breiman RF, Bassat Q, Tamboura B, Sanogo D, Onwuchekwa U, Manna B, Ramamurthy T, Kanungo S, Ahmed S, Qureshi S, Quadri F, Hossain A, Das SK, Antonio M, Mandomando I, Nhampossa T, Acácio S, Omore R, Ochieng JB, Oundo JO, Mintz ED, O'Reilly CE, Berkeley LY, Livio S, Panchalingam S, Nasrin D, Farag TH, Wu Y, Sommerfelt H, Robins-Browne RM, Del Canto F, Hazen TH, Rasko DA, Kotloff KL, Nataro JP, Levine MM.

PLoS Negl Trop Dis. 2019 Jan 4;13(1):e0007037. doi: 10.1371/journal.pntd.0007037. eCollection 2019 Jan.

15.

Improving Our Understanding of Salmonella enterica Serovar Paratyphi B through the Engineering and Testing of a Live Attenuated Vaccine Strain.

Higginson EE, Ramachandran G, Hazen TH, Kania DA, Rasko DA, Pasetti MF, Levine MM, Tennant SM.

mSphere. 2018 Nov 28;3(6). pii: e00474-18. doi: 10.1128/mSphere.00474-18.

16.

Temporal Variability of Escherichia coli Diversity in the Gastrointestinal Tracts of Tanzanian Children with and without Exposure to Antibiotics.

Richter TKS, Hazen TH, Lam D, Coles CL, Seidman JC, You Y, Silbergeld EK, Fraser CM, Rasko DA.

mSphere. 2018 Nov 7;3(6). pii: e00558-18. doi: 10.1128/mSphere.00558-18.

17.

Impact of Nurses Taking Daily Work Breaks in a Hospital Garden on Burnout.

Cordoza M, Ulrich RS, Manulik BJ, Gardiner SK, Fitzpatrick PS, Hazen TM, Mirka A, Perkins RS.

Am J Crit Care. 2018 Nov;27(6):508-512. doi: 10.4037/ajcc2018131.

PMID:
30385543
18.

Iron- and aluminium-induced depletion of molybdenum in acidic environments impedes the nitrogen cycle.

Ge X, Vaccaro BJ, Thorgersen MP, Poole FL 2nd, Majumder EL, Zane GM, De León KB, Lancaster WA, Moon JW, Paradis CJ, von Netzer F, Stahl DA, Adams PD, Arkin AP, Wall JD, Hazen TC, Adams MWW.

Environ Microbiol. 2019 Jan;21(1):152-163. doi: 10.1111/1462-2920.14435. Epub 2018 Nov 21.

19.

Impact of hydrologic boundaries on microbial planktonic and biofilm communities in shallow terrestrial subsurface environments.

Smith HJ, Zelaya AJ, De León KB, Chakraborty R, Elias DA, Hazen TC, Arkin AP, Cunningham AB, Fields MW.

FEMS Microbiol Ecol. 2018 Dec 1;94(12). doi: 10.1093/femsec/fiy191. Review.

20.

In situ decay of polyfluorinated benzoic acids under anaerobic conditions.

Paradis CJ, Moon JW, Elias DA, McKay LD, Hazen TC.

J Contam Hydrol. 2018 Oct;217:8-16. doi: 10.1016/j.jconhyd.2018.08.009. Epub 2018 Sep 5.

21.

Bacterial Biomarkers of Marcellus Shale Activity in Pennsylvania.

Chen See JR, Ulrich N, Nwanosike H, McLimans CJ, Tokarev V, Wright JR, Campa MF, Grant CJ, Hazen TC, Niles JM, Ressler D, Lamendella R.

Front Microbiol. 2018 Aug 2;9:1697. doi: 10.3389/fmicb.2018.01697. eCollection 2018.

22.

A Novel Shigella Proteome Microarray Discriminates Targets of Human Antibody Reactivity following Oral Vaccination and Experimental Challenge.

Ndungo E, Randall A, Hazen TH, Kania DA, Trappl-Kimmons K, Liang X, Barry EM, Kotloff KL, Chakraborty S, Mani S, Rasko DA, Pasetti MF.

mSphere. 2018 Aug 1;3(4). pii: e00260-18. doi: 10.1128/mSphere.00260-18.

23.

Microbial Community Structure and Functional Potential Along a Hypersaline Gradient.

Kimbrel JA, Ballor N, Wu YW, David MM, Hazen TC, Simmons BA, Singer SW, Jansson JK.

Front Microbiol. 2018 Jul 10;9:1492. doi: 10.3389/fmicb.2018.01492. eCollection 2018.

24.

Diversity among blaKPC-containing plasmids in Escherichia coli and other bacterial species isolated from the same patients.

Hazen TH, Mettus R, McElheny CL, Bowler SL, Nagaraj S, Doi Y, Rasko DA.

Sci Rep. 2018 Jul 6;8(1):10291. doi: 10.1038/s41598-018-28085-7.

25.

Microbial Interactions With Dissolved Organic Matter Drive Carbon Dynamics and Community Succession.

Wu X, Wu L, Liu Y, Zhang P, Li Q, Zhou J, Hess NJ, Hazen TC, Yang W, Chakraborty R.

Front Microbiol. 2018 Jun 8;9:1234. doi: 10.3389/fmicb.2018.01234. eCollection 2018.

26.

Enrichment of Bacteria From Eastern Mediterranean Sea Involved in Lignin Degradation via the Phenylacetyl-CoA Pathway.

Woo HL, Hazen TC.

Front Microbiol. 2018 May 9;9:922. doi: 10.3389/fmicb.2018.00922. eCollection 2018.

27.

Corrigendum: The Effect of Hydrostatic Pressure on Enrichments of Hydrocarbon Degrading Microbes From the Gulf of Mexico Following the Deepwater Horizon Oil Spill.

Marietou A, Chastain R, Beulig F, Scoma A, Hazen TC, Bartlett DH.

Front Microbiol. 2018 May 23;9:1050. doi: 10.3389/fmicb.2018.01050. eCollection 2018.

28.

The Effect of Hydrostatic Pressure on Enrichments of Hydrocarbon Degrading Microbes From the Gulf of Mexico Following the Deepwater Horizon Oil Spill.

Marietou A, Chastain R, Beulig F, Scoma A, Hazen TC, Bartlett DH.

Front Microbiol. 2018 Apr 26;9:808. doi: 10.3389/fmicb.2018.00808. eCollection 2018. Erratum in: Front Microbiol. 2018 May 23;9:1050.

29.

Impacts of Glutaraldehyde on Microbial Community Structure and Degradation Potential in Streams Impacted by Hydraulic Fracturing.

Campa MF, Techtmann SM, Gibson CM, Zhu X, Patterson M, Garcia de Matos Amaral A, Ulrich N, Campagna SR, Grant CJ, Lamendella R, Hazen TC.

Environ Sci Technol. 2018 May 15;52(10):5989-5999. doi: 10.1021/acs.est.8b00239. Epub 2018 Apr 30.

30.

Microbial community and metagenome dynamics during biodegradation of dispersed oil reveals potential key-players in cold Norwegian seawater.

Ribicic D, Netzer R, Hazen TC, Techtmann SM, Drabløs F, Brakstad OG.

Mar Pollut Bull. 2018 Apr;129(1):370-378. doi: 10.1016/j.marpolbul.2018.02.034. Epub 2018 Mar 23.

PMID:
29680562
31.

Improved Method for Estimating Reaction Rates During Push-Pull Tests.

Paradis CJ, Dixon ER, Lui LM, Arkin AP, Parker JC, Istok JD, Perfect E, McKay LD, Hazen TC.

Ground Water. 2019 Mar;57(2):292-302. doi: 10.1111/gwat.12770. Epub 2018 Apr 30.

PMID:
29656383
32.

Response of Aquatic Bacterial Communities to Hydraulic Fracturing in Northwestern Pennsylvania: A Five-Year Study.

Ulrich N, Kirchner V, Drucker R, Wright JR, McLimans CJ, Hazen TC, Campa MF, Grant CJ, Lamendella R.

Sci Rep. 2018 Apr 9;8(1):5683. doi: 10.1038/s41598-018-23679-7.

33.

Use of in-field bioreactors demonstrate groundwater filtration influences planktonic bacterial community assembly, but not biofilm composition.

Christensen GA, Moon J, Veach AM, Mosher JJ, Wymore AM, van Nostrand JD, Zhou J, Hazen TC, Arkin AP, Elias DA.

PLoS One. 2018 Mar 20;13(3):e0194663. doi: 10.1371/journal.pone.0194663. eCollection 2018.

34.

Phosphotyrosine-Mediated Regulation of Enterohemorrhagic Escherichia coli Virulence.

Robertson CD, Hazen TH, Kaper JB, Rasko DA, Hansen AM.

MBio. 2018 Feb 27;9(1). pii: e00097-18. doi: 10.1128/mBio.00097-18.

35.

Draft Genome Sequences of blaKPC-Containing Enterobacter aerogenes, Citrobacter freundii, and Citrobacter koseri Strains.

Hazen TH, Mettus RT, McElheny CL, Bowler SL, Doi Y, Rasko DA.

Genome Announc. 2018 Feb 22;6(8). pii: e00035-18. doi: 10.1128/genomeA.00035-18.

36.

Microbial Functional Gene Diversity Predicts Groundwater Contamination and Ecosystem Functioning.

He Z, Zhang P, Wu L, Rocha AM, Tu Q, Shi Z, Wu B, Qin Y, Wang J, Yan Q, Curtis D, Ning D, Van Nostrand JD, Wu L, Yang Y, Elias DA, Watson DB, Adams MWW, Fields MW, Alm EJ, Hazen TC, Adams PD, Arkin AP, Zhou J.

MBio. 2018 Feb 20;9(1). pii: e02435-17. doi: 10.1128/mBio.02435-17.

37.

New Insights into the Function and Global Distribution of Polyethylene Terephthalate (PET)-Degrading Bacteria and Enzymes in Marine and Terrestrial Metagenomes.

Danso D, Schmeisser C, Chow J, Zimmermann W, Wei R, Leggewie C, Li X, Hazen T, Streit WR.

Appl Environ Microbiol. 2018 Apr 2;84(8). pii: e02773-17. doi: 10.1128/AEM.02773-17. Print 2018 Apr 15.

38.

Community proteogenomics reveals the systemic impact of phosphorus availability on microbial functions in tropical soil.

Yao Q, Li Z, Song Y, Wright SJ, Guo X, Tringe SG, Tfaily MM, Paša-Tolić L, Hazen TC, Turner BL, Mayes MA, Pan C.

Nat Ecol Evol. 2018 Mar;2(3):499-509. doi: 10.1038/s41559-017-0463-5. Epub 2018 Jan 22.

PMID:
29358607
39.

Comparative transcriptomics of Aspergillus fumigatus strains upon exposure to human airway epithelial cells.

Watkins TN, Liu H, Chung M, Hazen TH, Dunning Hotopp JC, Filler SG, Bruno VM.

Microb Genom. 2018 Feb;4(2). doi: 10.1099/mgen.0.000154. Epub 2018 Jan 18.

40.

Construction of Viable Soil Defined Media Using Quantitative Metabolomics Analysis of Soil Metabolites.

Jenkins S, Swenson TL, Lau R, Rocha AM, Aaring A, Hazen TC, Chakraborty R, Northen TR.

Front Microbiol. 2017 Dec 22;8:2618. doi: 10.3389/fmicb.2017.02618. eCollection 2017.

41.

Bacterial Community Dynamics in Dichloromethane-Contaminated Groundwater Undergoing Natural Attenuation.

Wright J, Kirchner V, Bernard W, Ulrich N, McLimans C, Campa MF, Hazen T, Macbeth T, Marabello D, McDermott J, Mackelprang R, Roth K, Lamendella R.

Front Microbiol. 2017 Nov 22;8:2300. doi: 10.3389/fmicb.2017.02300. eCollection 2017.

42.

Comparison of Thaumarchaeotal populations from four deep sea basins.

Techtman SM, Mahmoudi N, Whitt KT, Campa MF, Fortney JL, Joyner DC, Hazen TC.

FEMS Microbiol Ecol. 2017 Nov 1;93(11). doi: 10.1093/femsec/fix128.

43.

The AraC Negative Regulator family modulates the activity of histone-like proteins in pathogenic bacteria.

Santiago AE, Yan MB, Hazen TH, Sauder B, Meza-Segura M, Rasko DA, Kendall MM, Ruiz-Perez F, Nataro JP.

PLoS Pathog. 2017 Aug 14;13(8):e1006545. doi: 10.1371/journal.ppat.1006545. eCollection 2017 Aug.

44.

Environmental Selection, Dispersal, and Organism Interactions Shape Community Assembly in High-Throughput Enrichment Culturing.

Justice NB, Sczesnak A, Hazen TC, Arkin AP.

Appl Environ Microbiol. 2017 Sep 29;83(20). pii: e01253-17. doi: 10.1128/AEM.01253-17. Print 2017 Oct 15.

45.

Transcriptional Variation of Diverse Enteropathogenic Escherichia coli Isolates under Virulence-Inducing Conditions.

Hazen TH, Daugherty SC, Shetty AC, Nataro JP, Rasko DA.

mSystems. 2017 Jul 25;2(4). pii: e00024-17. doi: 10.1128/mSystems.00024-17. eCollection 2017 Jul-Aug.

46.

Rapid Response of Eastern Mediterranean Deep Sea Microbial Communities to Oil.

Liu J, Techtmann SM, Woo HL, Ning D, Fortney JL, Hazen TC.

Sci Rep. 2017 Jul 18;7(1):5762. doi: 10.1038/s41598-017-05958-x.

47.

Unravelling biocomplexity of electroactive biofilms for producing hydrogen from biomass.

Lewis AJ, Campa MF, Hazen TC, Borole AP.

Microb Biotechnol. 2018 Jan;11(1):84-97. doi: 10.1111/1751-7915.12756. Epub 2017 Jul 11.

48.

Characterization of a Large Antibiotic Resistance Plasmid Found in Enteropathogenic Escherichia coli Strain B171 and Its Relatedness to Plasmids of Diverse E. coli and Shigella Strains.

Hazen TH, Michalski J, Nagaraj S, Okeke IN, Rasko DA.

Antimicrob Agents Chemother. 2017 Aug 24;61(9). pii: e00995-17. doi: 10.1128/AAC.00995-17. Print 2017 Sep.

49.

Comparative genomics and transcriptomics of Escherichia coli isolates carrying virulence factors of both enteropathogenic and enterotoxigenic E. coli.

Hazen TH, Michalski J, Luo Q, Shetty AC, Daugherty SC, Fleckenstein JM, Rasko DA.

Sci Rep. 2017 Jun 14;7(1):3513. doi: 10.1038/s41598-017-03489-z.

50.

High-Quality Draft Genome Sequences of Four Lignocellulose-Degrading Bacteria Isolated from Puerto Rican Forest Soil: Gordonia sp., Paenibacillus sp., Variovorax sp., and Vogesella sp.

Woo HL, DeAngelis KM, Teshima H, Davenport K, Daligault H, Erkkila T, Goodwin L, Gu W, Lo CC, Munk C, Scholz M, Xu Y, Chain P, Bruce D, Detter C, Tapia R, Han C, Simmons BA, Hazen TC.

Genome Announc. 2017 May 4;5(18). pii: e00300-17. doi: 10.1128/genomeA.00300-17.

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