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Items: 47

1.

Human and Extracellular DNA Depletion for Metagenomic Analysis of Complex Clinical Infection Samples Yields Optimized Viable Microbiome Profiles.

Nelson MT, Pope CE, Marsh RL, Wolter DJ, Weiss EJ, Hager KR, Vo AT, Brittnacher MJ, Radey MC, Hayden HS, Eng A, Miller SI, Borenstein E, Hoffman LR.

Cell Rep. 2019 Feb 19;26(8):2227-2240.e5. doi: 10.1016/j.celrep.2019.01.091.

2.

Adaptation of commensal proliferating Escherichia coli to the intestinal tract of young children with cystic fibrosis.

Matamouros S, Hayden HS, Hager KR, Brittnacher MJ, Lachance K, Weiss EJ, Pope CE, Imhaus AF, McNally CP, Borenstein E, Hoffman LR, Miller SI.

Proc Natl Acad Sci U S A. 2018 Feb 13;115(7):1605-1610. doi: 10.1073/pnas.1714373115. Epub 2018 Jan 29.

3.

Multi-drug resistant non-typhoidal Salmonella associated with invasive disease in western Kenya.

Akullian A, Montgomery JM, John-Stewart G, Miller SI, Hayden HS, Radey MC, Hager KR, Verani JR, Ochieng JB, Juma J, Katieno J, Fields B, Bigogo G, Audi A, Walson J.

PLoS Negl Trop Dis. 2018 Jan 12;12(1):e0006156. doi: 10.1371/journal.pntd.0006156. eCollection 2018 Jan.

4.

Clinical and Fecal Microbial Changes With Diet Therapy in Active Inflammatory Bowel Disease.

Suskind DL, Cohen SA, Brittnacher MJ, Wahbeh G, Lee D, Shaffer ML, Braly K, Hayden HS, Klein J, Gold B, Giefer M, Stallworth A, Miller SI.

J Clin Gastroenterol. 2018 Feb;52(2):155-163. doi: 10.1097/MCG.0000000000000772.

5.

GUTSS: An Alignment-Free Sequence Comparison Method for Use in Human Intestinal Microbiome and Fecal Microbiota Transplantation Analysis.

Brittnacher MJ, Heltshe SL, Hayden HS, Radey MC, Weiss EJ, Damman CJ, Zisman TL, Suskind DL, Miller SI.

PLoS One. 2016 Jul 8;11(7):e0158897. doi: 10.1371/journal.pone.0158897. eCollection 2016.

6.

Staphylococcus aureus Protein A Mediates Interspecies Interactions at the Cell Surface of Pseudomonas aeruginosa.

Armbruster CR, Wolter DJ, Mishra M, Hayden HS, Radey MC, Merrihew G, MacCoss MJ, Burns J, Wozniak DJ, Parsek MR, Hoffman LR.

MBio. 2016 May 24;7(3). pii: e00538-16. doi: 10.1128/mBio.00538-16.

7.

Genomic Analysis of Salmonella enterica Serovar Typhimurium Characterizes Strain Diversity for Recent U.S. Salmonellosis Cases and Identifies Mutations Linked to Loss of Fitness under Nitrosative and Oxidative Stress.

Hayden HS, Matamouros S, Hager KR, Brittnacher MJ, Rohmer L, Radey MC, Weiss EJ, Kim KB, Jacobs MA, Sims-Day EH, Yue M, Zaidi MB, Schifferli DM, Manning SD, Walson JL, Miller SI.

MBio. 2016 Mar 8;7(2):e00154. doi: 10.1128/mBio.00154-16.

8.

Metagenomic evidence for taxonomic dysbiosis and functional imbalance in the gastrointestinal tracts of children with cystic fibrosis.

Manor O, Levy R, Pope CE, Hayden HS, Brittnacher MJ, Carr R, Radey MC, Hager KR, Heltshe SL, Ramsey BW, Miller SI, Hoffman LR, Borenstein E.

Sci Rep. 2016 Mar 4;6:22493. doi: 10.1038/srep22493.

9.

Low Level Engraftment and Improvement following a Single Colonoscopic Administration of Fecal Microbiota to Patients with Ulcerative Colitis.

Damman CJ, Brittnacher MJ, Westerhoff M, Hayden HS, Radey M, Hager KR, Marquis SR, Miller SI, Zisman TL.

PLoS One. 2015 Aug 19;10(8):e0133925. doi: 10.1371/journal.pone.0133925. eCollection 2015.

10.

Resources for Genetic and Genomic Analysis of Emerging Pathogen Acinetobacter baumannii.

Gallagher LA, Ramage E, Weiss EJ, Radey M, Hayden HS, Held KG, Huse HK, Zurawski DV, Brittnacher MJ, Manoil C.

J Bacteriol. 2015 Jun 15;197(12):2027-35. doi: 10.1128/JB.00131-15. Epub 2015 Apr 6.

11.

An underlying mechanism for the increased mutagenesis of lagging-strand genes in Bacillus subtilis.

Million-Weaver S, Samadpour AN, Moreno-Habel DA, Nugent P, Brittnacher MJ, Weiss E, Hayden HS, Miller SI, Liachko I, Merrikh H.

Proc Natl Acad Sci U S A. 2015 Mar 10;112(10):E1096-105. doi: 10.1073/pnas.1416651112. Epub 2015 Feb 23.

12.

Fecal microbial transplant effect on clinical outcomes and fecal microbiome in active Crohn's disease.

Suskind DL, Brittnacher MJ, Wahbeh G, Shaffer ML, Hayden HS, Qin X, Singh N, Damman CJ, Hager KR, Nielson H, Miller SI.

Inflamm Bowel Dis. 2015 Mar;21(3):556-63. doi: 10.1097/MIB.0000000000000307.

13.

Cross-species comparison of the Burkholderia pseudomallei, Burkholderia thailandensis, and Burkholderia mallei quorum-sensing regulons.

Majerczyk CD, Brittnacher MJ, Jacobs MA, Armour CD, Radey MC, Bunt R, Hayden HS, Bydalek R, Greenberg EP.

J Bacteriol. 2014 Nov;196(22):3862-71. doi: 10.1128/JB.01974-14. Epub 2014 Sep 2.

14.

Genomic analysis of the emergence of 20th century epidemic dysentery.

Rohmer L, Jacobs MA, Brittnacher MJ, Fong C, Hayden HS, Hocquet D, Weiss EJ, Radey M, Germani Y, Talukder KA, Hager AJ, Kemner JM, Sims-Day EH, Matamouros S, Hager KR, Miller SI.

BMC Genomics. 2014 May 10;15:355. doi: 10.1186/1471-2164-15-355.

15.

Gastrointestinal pathology in juvenile and adult CFTR-knockout ferrets.

Sun X, Olivier AK, Yi Y, Pope CE, Hayden HS, Liang B, Sui H, Zhou W, Hager KR, Zhang Y, Liu X, Yan Z, Fisher JT, Keiser NW, Song Y, Tyler SR, Goeken JA, Kinyon JM, Radey MC, Fligg D, Wang X, Xie W, Lynch TJ, Kaminsky PM, Brittnacher MJ, Miller SI, Parekh K, Meyerholz DK, Hoffman LR, Frana T, Stewart ZA, Engelhardt JF.

Am J Pathol. 2014 May;184(5):1309-22. doi: 10.1016/j.ajpath.2014.01.035. Epub 2014 Mar 15.

16.

Escherichia coli dysbiosis correlates with gastrointestinal dysfunction in children with cystic fibrosis.

Hoffman LR, Pope CE, Hayden HS, Heltshe S, Levy R, McNamara S, Jacobs MA, Rohmer L, Radey M, Ramsey BW, Brittnacher MJ, Borenstein E, Miller SI.

Clin Infect Dis. 2014 Feb;58(3):396-9. doi: 10.1093/cid/cit715. Epub 2013 Oct 30.

17.

Genome sequence of Francisella tularensis subspecies holarctica strain FSC200, isolated from a child with tularemia.

Svensson K, Sjödin A, Byström M, Granberg M, Brittnacher MJ, Rohmer L, Jacobs MA, Sims-Day EH, Levy R, Zhou Y, Hayden HS, Lim R, Chang J, Guenthener D, Kang A, Haugen E, Gillett W, Kaul R, Forsman M, Larsson P, Johansson A.

J Bacteriol. 2012 Dec;194(24):6965-6. doi: 10.1128/JB.01040-12.

18.

Evolution of Burkholderia pseudomallei in recurrent melioidosis.

Hayden HS, Lim R, Brittnacher MJ, Sims EH, Ramage ER, Fong C, Wu Z, Crist E, Chang J, Zhou Y, Radey M, Rohmer L, Haugen E, Gillett W, Wuthiekanun V, Peacock SJ, Kaul R, Miller SI, Manoil C, Jacobs MA.

PLoS One. 2012;7(5):e36507. doi: 10.1371/journal.pone.0036507. Epub 2012 May 15.

19.

PGAT: a multistrain analysis resource for microbial genomes.

Brittnacher MJ, Fong C, Hayden HS, Jacobs MA, Radey M, Rohmer L.

Bioinformatics. 2011 Sep 1;27(17):2429-30. doi: 10.1093/bioinformatics/btr418. Epub 2011 Jul 15.

20.

A human genome structural variation sequencing resource reveals insights into mutational mechanisms.

Kidd JM, Graves T, Newman TL, Fulton R, Hayden HS, Malig M, Kallicki J, Kaul R, Wilson RK, Eichler EE.

Cell. 2010 Nov 24;143(5):837-47. doi: 10.1016/j.cell.2010.10.027.

21.

Characterization of missing human genome sequences and copy-number polymorphic insertions.

Kidd JM, Sampas N, Antonacci F, Graves T, Fulton R, Hayden HS, Alkan C, Malig M, Ventura M, Giannuzzi G, Kallicki J, Anderson P, Tsalenko A, Yamada NA, Tsang P, Kaul R, Wilson RK, Bruhn L, Eichler EE.

Nat Methods. 2010 May;7(5):365-71.

22.

Mapping and sequencing of structural variation from eight human genomes.

Kidd JM, Cooper GM, Donahue WF, Hayden HS, Sampas N, Graves T, Hansen N, Teague B, Alkan C, Antonacci F, Haugen E, Zerr T, Yamada NA, Tsang P, Newman TL, Tüzün E, Cheng Z, Ebling HM, Tusneem N, David R, Gillett W, Phelps KA, Weaver M, Saranga D, Brand A, Tao W, Gustafson E, McKernan K, Chen L, Malig M, Smith JD, Korn JM, McCarroll SA, Altshuler DA, Peiffer DA, Dorschner M, Stamatoyannopoulos J, Schwartz D, Nickerson DA, Mullikin JC, Wilson RK, Bruhn L, Olson MV, Kaul R, Smith DR, Eichler EE.

Nature. 2008 May 1;453(7191):56-64. doi: 10.1038/nature06862.

23.

Large-insert genome analysis technology detects structural variation in Pseudomonas aeruginosa clinical strains from cystic fibrosis patients.

Hayden HS, Gillett W, Saenphimmachak C, Lim R, Zhou Y, Jacobs MA, Chang J, Rohmer L, D'Argenio DA, Palmieri A, Levy R, Haugen E, Wong GK, Brittnacher MJ, Burns JL, Miller SI, Olson MV, Kaul R.

Genomics. 2008 Jun;91(6):530-7. doi: 10.1016/j.ygeno.2008.02.005. Epub 2008 Apr 29.

24.

Closing gaps in the human genome with fosmid resources generated from multiple individuals.

Bovee D, Zhou Y, Haugen E, Wu Z, Hayden HS, Gillett W, Tuzun E, Cooper GM, Sampas N, Phelps K, Levy R, Morrison VA, Sprague J, Jewett D, Buckley D, Subramaniam S, Chang J, Smith DR, Olson MV, Eichler EE, Kaul R.

Nat Genet. 2008 Jan;40(1):96-101. Epub 2007 Dec 23.

PMID:
18157130
25.

Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains.

Rohmer L, Fong C, Abmayr S, Wasnick M, Larson Freeman TJ, Radey M, Guina T, Svensson K, Hayden HS, Jacobs M, Gallagher LA, Manoil C, Ernst RK, Drees B, Buckley D, Haugen E, Bovee D, Zhou Y, Chang J, Levy R, Lim R, Gillett W, Guenthener D, Kang A, Shaffer SA, Taylor G, Chen J, Gallis B, D'Argenio DA, Forsman M, Olson MV, Goodlett DR, Kaul R, Miller SI, Brittnacher MJ.

Genome Biol. 2007;8(6):R102.

26.

Growth phenotypes of Pseudomonas aeruginosa lasR mutants adapted to the airways of cystic fibrosis patients.

D'Argenio DA, Wu M, Hoffman LR, Kulasekara HD, Déziel E, Smith EE, Nguyen H, Ernst RK, Larson Freeman TJ, Spencer DH, Brittnacher M, Hayden HS, Selgrade S, Klausen M, Goodlett DR, Burns JL, Ramsey BW, Miller SI.

Mol Microbiol. 2007 Apr;64(2):512-33.

27.

Centromere targeting element within the histone fold domain of Cid.

Vermaak D, Hayden HS, Henikoff S.

Mol Cell Biol. 2002 Nov;22(21):7553-61.

28.

Cardiotoxic thyroid and radioactive iodine.

HAMMONDS EE, CORRIGAN KE, HAYDEN HS.

JAMA. 1960 Aug 27;173:1902-6. No abstract available.

PMID:
14399361
29.

Thiacrystal scintillation counter.

CORRIGAN KE, HAYDEN HS.

Radiology. 1959 Jul;73(1):107. No abstract available.

PMID:
13668112
30.

Surgical probe scintillation counters; recent developments.

CORRIGAN KE, HAYDEN HS.

J Mich State Med Soc. 1959 Apr;58(4):598-607. No abstract available.

PMID:
13642006
31.

Failures, flops and false localizations in tracer technic.

CORRIGAN KE, HAYDEN HS.

Radiology. 1953 Jun;60(6):870-84. No abstract available.

PMID:
13064393
32.

Detection of concealed thyroid disease by tracer technique.

REYNOLDS L, CORRIGAN KE, HAYDEN HS.

J Am Med Assoc. 1953 Jan 31;151(5):368-71. No abstract available.

PMID:
13011000
33.

Diagnostic use of radioactive isotopes.

REYNOLDS L, CORRIGAN KE, HAYDEN HS.

Am J Roentgenol Radium Ther Nucl Med. 1952 Sep;68(3):421-34. No abstract available.

PMID:
14952621
34.

Diagnostic studies with radioactive isotope tracers.

CORRIGAN KE, HAYDEN HS.

Radiology. 1952 Jul;59(1):1-18. No abstract available.

PMID:
14941989
35.

The metabolism of radioactive iodine (I131) in patients with cardiac disease.

BIRKHILL FR, CORRIGAN KE, HAYDEN HS.

Am J Roentgenol Radium Ther Nucl Med. 1952 Jan;67(1):42-50. No abstract available.

PMID:
14903254
36.

Sensitivity of fungi to antibiotics and radioactivity compared to iodine in vitro.

HAMMER JM, PEARSON IA, CORRIGAN KE, HAYDEN HS.

J Mich State Med Soc. 1951 Aug;50(8):887-93. No abstract available.

PMID:
14874097
37.

The influence of cortisone on the radioactive iodine (I131) tracer pattern.

CORRIGAN KE, HAYDEN HS.

Harper Hosp Bull. 1951 May-Jun;9(3):110-2. No abstract available.

PMID:
14840729
38.

Differentiation of mediastinal tumors by cinefluorographic and radioactive iodine (I131) studies.

BIRKHILL FR, CORRIGAN KE, HAYDEN HS.

Harper Hosp Bull. 1951 May-Jun;9(3):69-74. No abstract available.

PMID:
14840725
39.

The use of the cinefluorographic method for teaching purposes.

REYNOLDS L, CORRIGAN KE, HAYDEN HS.

Am J Roentgenol Radium Ther. 1950 Jun;63(6):902-14. No abstract available.

PMID:
15419348
40.

Use of radioactive isotopes in study of fungi and bacteria.

HAMMER JM, PEARSON IA, CORRIGAN KE, HAYDEN HS, MALLMANN WL.

Am J Clin Pathol. 1950 Mar;20(3):282-6. No abstract available.

PMID:
15432310
41.

Early detection of cretinism and other diagnostic uses of radioactive tracers in infancy and childhood.

REYNOLDS L, CORRIGAN KE, HAYDEN HS.

Harper Hosp Bull. 1950 Jan-Feb;8(1):4-6. No abstract available.

PMID:
15399756
42.

Safety factors for radium-containing static eliminators used in printing and allied industries.

CORRIGAN KE, HAYDEN HS, REED JO.

J Mich State Med Soc. 1949 Oct;48(10):1279-82. No abstract available.

PMID:
18148924
43.

The depressive effect of desiccated thyroid on I131 metabolism; a preliminary report.

REED JO, CORRIGAN KE, HAYDEN HS.

Harper Hosp Bull. 1949 May-Jun;7(3):236-9. No abstract available.

PMID:
18153517
44.

Safety factors required for radium-containing static eliminators; as used in the printing and allied industries.

CORRIGAN KE, HAYDEN HS, REED JO.

Harper Hosp Bull. 1949 Mar-Apr;7(2):216. No abstract available.

PMID:
18126802
45.

Studies on the Behavior of Fungi in the Presence of Radioactive Isotopes.

Pearson IA, Hammer JM, Corrigan KE, Hayden HS.

J Bacteriol. 1948 Oct;56(4):397-402. No abstract available.

46.

Diagnostic use of radioactive tracers.

HAYDEN HS, CORRIGAN KE.

Harper Hosp Bull. 1948 Feb;6(1):1-10. No abstract available.

PMID:
18914613
47.

X-Ray Diffraction and Polarized Light Studies of the Fiber Structure of the Dura and of Meningioma.

Reynolds L, Corrigan KE, Hayden HS.

Yale J Biol Med. 1939 May;11(5):479-83. No abstract available.

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