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Items: 20

1.

Genomic analysis of the mesophilic Thermotogae genus Mesotoga reveals phylogeographic structure and genomic determinants of its distinct metabolism.

Nesbø CL, Charchuk R, Pollo SMJ, Budwill K, Kublanov IV, Haverkamp THA, Foght J.

Environ Microbiol. 2019 Jan;21(1):456-470. doi: 10.1111/1462-2920.14477. Epub 2018 Dec 19.

PMID:
30452102
2.

Thermosipho spp. Immune System Differences Affect Variation in Genome Size and Geographical Distributions.

Haverkamp THA, Geslin C, Lossouarn J, Podosokorskaya OA, Kublanov I, Nesbø CL.

Genome Biol Evol. 2018 Nov 1;10(11):2853-2866. doi: 10.1093/gbe/evy202.

3.

A Single Vibrionales 16S rRNA Oligotype Dominates the Intestinal Microbiome in Two Geographically Separated Atlantic cod Populations.

Riiser ES, Haverkamp THA, Borgan Ø, Jakobsen KS, Jentoft S, Star B.

Front Microbiol. 2018 Jul 13;9:1561. doi: 10.3389/fmicb.2018.01561. eCollection 2018.

4.

Gastrointestinal microbial community changes in Atlantic cod (Gadus morhua) exposed to crude oil.

Bagi A, Riiser ES, Molland HS, Star B, Haverkamp THA, Sydnes MO, Pampanin DM.

BMC Microbiol. 2018 Apr 2;18(1):25. doi: 10.1186/s12866-018-1171-2.

5.

Microbial Community Composition of Tap Water and Biofilms Treated with or without Copper-Silver Ionization.

Stüken A, Haverkamp THA, Dirven HAAM, Gilfillan GD, Leithaug M, Lund V.

Environ Sci Technol. 2018 Mar 20;52(6):3354-3364. doi: 10.1021/acs.est.7b05963. Epub 2018 Feb 28.

PMID:
29461810
6.

Two viruses, MCV1 and MCV2, which infect Marinitoga bacteria isolated from deep-sea hydrothermal vents: functional and genomic analysis.

Mercier C, Lossouarn J, Nesbø CL, Haverkamp THA, Baudoux AC, Jebbar M, Bienvenu N, Thiroux S, Dupont S, Geslin C.

Environ Microbiol. 2018 Feb;20(2):577-587. doi: 10.1111/1462-2920.13967. Epub 2017 Dec 4.

PMID:
29160003
7.

Temporal dynamics in microbial soil communities at anthrax carcass sites.

Valseth K, Nesbø CL, Easterday WR, Turner WC, Olsen JS, Stenseth NC, Haverkamp THA.

BMC Microbiol. 2017 Sep 26;17(1):206. doi: 10.1186/s12866-017-1111-6.

8.

Genomic analyses suggest parallel ecological divergence in Heliosperma pusillum (Caryophyllaceae).

Trucchi E, Frajman B, Haverkamp THA, Schönswetter P, Paun O.

New Phytol. 2017 Oct;216(1):267-278. doi: 10.1111/nph.14722. Epub 2017 Aug 7.

9.

Draft Genome Sequences of Two Bacillus anthracis Strains from Etosha National Park, Namibia.

Valseth K, Nesbø CL, Easterday WR, Turner WC, Olsen JS, Stenseth NC, Haverkamp TH.

Genome Announc. 2016 Aug 25;4(4). pii: e00861-16. doi: 10.1128/genomeA.00861-16.

10.

Evidence for extensive gene flow and Thermotoga subpopulations in subsurface and marine environments.

Nesbø CL, S Swithers K, Dahle H, Haverkamp TH, Birkeland NK, Sokolova T, Kublanov I, Zhaxybayeva O.

ISME J. 2015 Jul;9(7):1532-42. doi: 10.1038/ismej.2014.238. Epub 2014 Dec 12.

11.

BLASTGrabber: a bioinformatic tool for visualization, analysis and sequence selection of massive BLAST data.

Neumann RS, Kumar S, Haverkamp TH, Shalchian-Tabrizi K.

BMC Bioinformatics. 2014 May 5;15:128. doi: 10.1186/1471-2105-15-128.

12.

Linking geology and microbiology: inactive pockmarks affect sediment microbial community structure.

Haverkamp TH, Hammer Ø, Jakobsen KS.

PLoS One. 2014 Jan 24;9(1):e85990. doi: 10.1371/journal.pone.0085990. eCollection 2014.

13.

Next generation sequencing shows high variation of the intestinal microbial species composition in Atlantic cod caught at a single location.

Star B, Haverkamp TH, Jentoft S, Jakobsen KS.

BMC Microbiol. 2013 Nov 9;13:248. doi: 10.1186/1471-2180-13-248.

14.

Estimation of metagenome size and structure in an experimental soil microbiota from low coverage next-generation sequence data.

Frisli T, Haverkamp TH, Jakobsen KS, Stenseth NC, Rudi K.

J Appl Microbiol. 2013 Jan;114(1):141-51. doi: 10.1111/jam.12035. Epub 2012 Nov 1.

15.

Metagenomic and geochemical characterization of pockmarked sediments overlaying the Troll petroleum reservoir in the North Sea.

Håvelsrud OE, Haverkamp TH, Kristensen T, Jakobsen KS, Rike AG.

BMC Microbiol. 2012 Sep 11;12:203. doi: 10.1186/1471-2180-12-203.

16.

Environmental microbiology through the lens of high-throughput DNA sequencing: synopsis of current platforms and bioinformatics approaches.

Logares R, Haverkamp TH, Kumar S, Lanzén A, Nederbragt AJ, Quince C, Kauserud H.

J Microbiol Methods. 2012 Oct;91(1):106-13. doi: 10.1016/j.mimet.2012.07.017. Epub 2012 Jul 28. Review.

PMID:
22849829
17.

A metagenomic study of methanotrophic microorganisms in Coal Oil Point seep sediments.

Håvelsrud OE, Haverkamp TH, Kristensen T, Jakobsen KS, Rike AG.

BMC Microbiol. 2011 Oct 4;11:221. doi: 10.1186/1471-2180-11-221.

18.

Colorful microdiversity of Synechococcus strains (picocyanobacteria) isolated from the Baltic Sea.

Haverkamp TH, Schouten D, Doeleman M, Wollenzien U, Huisman J, Stal LJ.

ISME J. 2009 Apr;3(4):397-408. doi: 10.1038/ismej.2008.118. Epub 2008 Dec 4.

PMID:
19052629
19.

Phenotypic and genetic diversification of Pseudanabaena spp. (cyanobacteria).

Acinas SG, Haverkamp TH, Huisman J, Stal LJ.

ISME J. 2009 Jan;3(1):31-46. doi: 10.1038/ismej.2008.78. Epub 2008 Sep 4.

PMID:
18769459
20.

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