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Items: 1 to 50 of 186

1.

Interoperable and scalable data analysis with microservices: Applications in Metabolomics.

Emami Khoonsari P, Moreno P, Bergmann S, Burman J, Capuccini M, Carone M, Cascante M, de Atauri P, Foguet C, Gonzalez-Beltran A, Hankemeier T, Haug K, He S, Herman S, Johnson D, Kale N, Larsson A, Neumann S, Peters K, Pireddu L, Rocca-Serra P, Roger P, Rueedi R, Ruttkies C, Sadawi N, Salek RM, Sansone SA, Schober D, Selivanov V, Thévenot EA, van Vliet M, Zanetti G, Steinbeck C, Kultima K, Spjuth O.

Bioinformatics. 2019 Mar 9. pii: btz160. doi: 10.1093/bioinformatics/btz160. [Epub ahead of print]

PMID:
30851093
2.

mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics.

Hoffmann N, Rein J, Sachsenberg T, Hartler J, Haug K, Mayer G, Alka O, Dayalan S, Pearce JTM, Rocca-Serra P, Qi D, Eisenacher M, Perez-Riverol Y, Vizcaíno JA, Salek RM, Neumann S, Jones AR.

Anal Chem. 2019 Mar 5;91(5):3302-3310. doi: 10.1021/acs.analchem.8b04310. Epub 2019 Feb 13.

PMID:
30688441
3.

PhenoMeNal: processing and analysis of metabolomics data in the cloud.

Peters K, Bradbury J, Bergmann S, Capuccini M, Cascante M, de Atauri P, Ebbels TMD, Foguet C, Glen R, Gonzalez-Beltran A, Günther UL, Handakas E, Hankemeier T, Haug K, Herman S, Holub P, Izzo M, Jacob D, Johnson D, Jourdan F, Kale N, Karaman I, Khalili B, Emami Khonsari P, Kultima K, Lampa S, Larsson A, Ludwig C, Moreno P, Neumann S, Novella JA, O'Donovan C, Pearce JTM, Peluso A, Piras ME, Pireddu L, Reed MAC, Rocca-Serra P, Roger P, Rosato A, Rueedi R, Ruttkies C, Sadawi N, Salek RM, Sansone SA, Selivanov V, Spjuth O, Schober D, Thévenot EA, Tomasoni M, van Rijswijk M, van Vliet M, Viant MR, Weber RJM, Zanetti G, Steinbeck C.

Gigascience. 2019 Feb 1;8(2). pii: giy149. doi: 10.1093/gigascience/giy149.

4.

Perinatal death and exposure to dental amalgam fillings during pregnancy in the population-based MoBa cohort.

Björkman L, Lygre GB, Haug K, Skjærven R.

PLoS One. 2018 Dec 7;13(12):e0208803. doi: 10.1371/journal.pone.0208803. eCollection 2018.

5.

Effect of CYP4F2, VKORC1, and CYP2C9 in Influencing Coumarin Dose: A Single-Patient Data Meta-Analysis in More Than 15,000 Individuals.

Danese E, Raimondi S, Montagnana M, Tagetti A, Langaee T, Borgiani P, Ciccacci C, Carcas AJ, Borobia AM, Tong HY, Dávila-Fajardo C, Rodrigues Botton M, Bourgeois S, Deloukas P, Caldwell MD, Burmester JK, Berg RL, Cavallari LH, Drozda K, Huang M, Zhao LZ, Cen HJ, Gonzalez-Conejero R, Roldan V, Nakamura Y, Mushiroda T, Gong IY, Kim RB, Hirai K, Itoh K, Isaza C, Beltrán L, Jiménez-Varo E, Cañadas-Garre M, Giontella A, Kringen MK, Haug KBF, Gwak HS, Lee KE, Minuz P, Lee MTM, Lubitz SA, Scott S, Mazzaccara C, Sacchetti L, Genç E, Özer M, Pathare A, Krishnamoorthy R, Paldi A, Siguret V, Loriot MA, Kutala VK, Suarez-Kurtz G, Perini J, Denny JC, Ramirez AH, Mittal B, Rathore SS, Sagreiya H, Altman R, Shahin MHA, Khalifa SI, Limdi NA, Rivers C, Shendre A, Dillon C, Suriapranata IM, Zhou HH, Tan SL, Tatarunas V, Lesauskaite V, Zhang Y, Maitland-van der Zee AH, Verhoef TI, de Boer A, Taljaard M, Zambon CF, Pengo V, Zhang JE, Pirmohamed M, Johnson JA, Fava C.

Clin Pharmacol Ther. 2018 Dec 2. doi: 10.1002/cpt.1323. [Epub ahead of print]

PMID:
30506689
6.

No Association Between Risk of Anterior Cruciate Ligament Rupture and Selected Candidate Collagen Gene Variants in Female Elite Athletes From High-Risk Team Sports.

Sivertsen EA, Haug KBF, Kristianslund EK, Trøseid AS, Parkkari J, Lehtimäki T, Mononen N, Pasanen K, Bahr R.

Am J Sports Med. 2019 Jan;47(1):52-58. doi: 10.1177/0363546518808467. Epub 2018 Nov 28.

PMID:
30485117
7.

Prenatal exposure to dental amalgam and risk of symptoms of attention-deficit and hyperactivity disorder (ADHD).

Lygre GB, Aase H, Haug K, Lie SA, Björkman L.

Community Dent Oral Epidemiol. 2018 Oct;46(5):472-481. doi: 10.1111/cdoe.12409. Epub 2018 Aug 7.

PMID:
30084494
8.

The future of metabolomics in ELIXIR.

van Rijswijk M, Beirnaert C, Caron C, Cascante M, Dominguez V, Dunn WB, Ebbels TMD, Giacomoni F, Gonzalez-Beltran A, Hankemeier T, Haug K, Izquierdo-Garcia JL, Jimenez RC, Jourdan F, Kale N, Klapa MI, Kohlbacher O, Koort K, Kultima K, Le Corguillé G, Moreno P, Moschonas NK, Neumann S, O'Donovan C, Reczko M, Rocca-Serra P, Rosato A, Salek RM, Sansone SA, Satagopam V, Schober D, Shimmo R, Spicer RA, Spjuth O, Thévenot EA, Viant MR, Weber RJM, Willighagen EL, Zanetti G, Steinbeck C.

Version 2. F1000Res. 2017 Sep 6 [revised 2017 Jan 1];6. pii: ELIXIR-1649. doi: 10.12688/f1000research.12342.2. eCollection 2017.

9.

nmrML: A Community Supported Open Data Standard for the Description, Storage, and Exchange of NMR Data.

Schober D, Jacob D, Wilson M, Cruz JA, Marcu A, Grant JR, Moing A, Deborde C, de Figueiredo LF, Haug K, Rocca-Serra P, Easton J, Ebbels TMD, Hao J, Ludwig C, Günther UL, Rosato A, Klein MS, Lewis IA, Luchinat C, Jones AR, Grauslys A, Larralde M, Yokochi M, Kobayashi N, Porzel A, Griffin JL, Viant MR, Wishart DS, Steinbeck C, Salek RM, Neumann S.

Anal Chem. 2018 Jan 2;90(1):649-656. doi: 10.1021/acs.analchem.7b02795. Epub 2017 Dec 14.

10.

Automated assembly of species metabolomes through data submission into a public repository.

Salek RM, Conesa P, Cochrane K, Haug K, Williams M, Kale N, Moreno P, Jayaseelan KV, Macias JR, Nainala VC, Hall RD, Reed LK, Viant MR, O'Donovan C, Steinbeck C.

Gigascience. 2017 Aug 1;6(8):1-4. doi: 10.1093/gigascience/gix062.

11.

Size and concentration analyses of extracellular vesicles by nanoparticle tracking analysis: a variation study.

Vestad B, Llorente A, Neurauter A, Phuyal S, Kierulf B, Kierulf P, Skotland T, Sandvig K, Haug KBF, Øvstebø R.

J Extracell Vesicles. 2017 Jul 19;6(1):1344087. doi: 10.1080/20013078.2017.1344087. eCollection 2017.

12.

Population Pharmacokinetics of Volasertib Administered in Patients with Acute Myeloid Leukaemia as a Single Agent or in Combination with Cytarabine.

P Solans B, Fleury A, Freiwald M, Fritsch H, Haug K, Trocóniz IF.

Clin Pharmacokinet. 2018 Mar;57(3):379-392. doi: 10.1007/s40262-017-0566-9.

PMID:
28631179
13.

Discovering and linking public omics data sets using the Omics Discovery Index.

Perez-Riverol Y, Bai M, da Veiga Leprevost F, Squizzato S, Park YM, Haug K, Carroll AJ, Spalding D, Paschall J, Wang M, Del-Toro N, Ternent T, Zhang P, Buso N, Bandeira N, Deutsch EW, Campbell DS, Beavis RC, Salek RM, Sarkans U, Petryszak R, Keays M, Fahy E, Sud M, Subramaniam S, Barbera A, Jiménez RC, Nesvizhskii AI, Sansone SA, Steinbeck C, Lopez R, Vizcaíno JA, Ping P, Hermjakob H.

Nat Biotechnol. 2017 May 9;35(5):406-409. doi: 10.1038/nbt.3790. No abstract available.

14.

mzML2ISA & nmrML2ISA: generating enriched ISA-Tab metadata files from metabolomics XML data.

Larralde M, Lawson TN, Weber RJM, Moreno P, Haug K, Rocca-Serra P, Viant MR, Steinbeck C, Salek RM.

Bioinformatics. 2017 Aug 15;33(16):2598-2600. doi: 10.1093/bioinformatics/btx169.

15.

Global open data management in metabolomics.

Haug K, Salek RM, Steinbeck C.

Curr Opin Chem Biol. 2017 Feb;36:58-63. doi: 10.1016/j.cbpa.2016.12.024. Epub 2017 Jan 13. Review.

16.

Computational tools and workflows in metabolomics: An international survey highlights the opportunity for harmonisation through Galaxy.

Weber RJM, Lawson TN, Salek RM, Ebbels TMD, Glen RC, Goodacre R, Griffin JL, Haug K, Koulman A, Moreno P, Ralser M, Steinbeck C, Dunn WB, Viant MR.

Metabolomics. 2017;13(2):12. doi: 10.1007/s11306-016-1147-x. Epub 2016 Dec 27. No abstract available.

17.

Quality indicators for the referral process from primary to specialised mental health care: an explorative study in accordance with the RAND appropriateness method.

Hartveit M, Vanhaecht K, Thorsen O, Biringer E, Haug K, Aslaksen A.

BMC Health Serv Res. 2017 Jan 3;17(1):4. doi: 10.1186/s12913-016-1941-1. Review.

18.

Maternal Smoking Status in Successive Pregnancies and Risk of Having a Small for Gestational Age Infant.

Kvalvik LG, Haug K, Klungsøyr K, Morken NH, DeRoo LA, Skjaerven R.

Paediatr Perinat Epidemiol. 2017 Jan;31(1):21-28. doi: 10.1111/ppe.12333. Epub 2016 Dec 16.

PMID:
27981584
19.

Socio-economic risk factors for preterm birth in Norway 1999-2009.

Oftedal AM, Busterud K, Irgens LM, Haug K, Rasmussen S.

Scand J Public Health. 2016 Aug;44(6):587-92. doi: 10.1177/1403494816653288. Epub 2016 Jun 15.

PMID:
27307464
20.

Prenatal exposure to dental amalgam and pregnancy outcome.

Lygre GB, Haug K, Skjaerven R, Björkman L.

Community Dent Oral Epidemiol. 2016 Oct;44(5):442-9. doi: 10.1111/cdoe.12233. Epub 2016 May 5.

PMID:
27146796
21.

MetaboLights: An Open-Access Database Repository for Metabolomics Data.

Kale NS, Haug K, Conesa P, Jayseelan K, Moreno P, Rocca-Serra P, Nainala VC, Spicer RA, Williams M, Li X, Salek RM, Griffin JL, Steinbeck C.

Curr Protoc Bioinformatics. 2016 Mar 24;53:14.13.1-18. doi: 10.1002/0471250953.bi1413s53.

PMID:
27010336
22.

Data standards can boost metabolomics research, and if there is a will, there is a way.

Rocca-Serra P, Salek RM, Arita M, Correa E, Dayalan S, Gonzalez-Beltran A, Ebbels T, Goodacre R, Hastings J, Haug K, Koulman A, Nikolski M, Oresic M, Sansone SA, Schober D, Smith J, Steinbeck C, Viant MR, Neumann S.

Metabolomics. 2016;12:14. doi: 10.1007/s11306-015-0879-3. Epub 2015 Nov 17. Review.

23.

COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access.

Salek RM, Neumann S, Schober D, Hummel J, Billiau K, Kopka J, Correa E, Reijmers T, Rosato A, Tenori L, Turano P, Marin S, Deborde C, Jacob D, Rolin D, Dartigues B, Conesa P, Haug K, Rocca-Serra P, O'Hagan S, Hao J, van Vliet M, Sysi-Aho M, Ludwig C, Bouwman J, Cascante M, Ebbels T, Griffin JL, Moing A, Nikolski M, Oresic M, Sansone SA, Viant MR, Goodacre R, Günther UL, Hankemeier T, Luchinat C, Walther D, Steinbeck C.

Metabolomics. 2015;11(6):1587-1597. Epub 2015 May 26.

24.

SpeckTackle: JavaScript charts for spectroscopy.

Beisken S, Conesa P, Haug K, Salek RM, Steinbeck C.

J Cheminform. 2015 May 9;7:17. doi: 10.1186/s13321-015-0065-7. eCollection 2015.

25.

Ten recommendations for software engineering in research.

Hastings J, Haug K, Steinbeck C.

Gigascience. 2014 Dec 4;3(1):31. doi: 10.1186/2047-217X-3-31. eCollection 2014.

26.

Influence of biochar application methods on the phytostabilization of a hydrophobic soil contaminated with lead and acid tar.

Edenborn SL, Edenborn HM, Krynock RM, Haug KLZ.

J Environ Manage. 2015 Mar 1;150:226-234. doi: 10.1016/j.jenvman.2014.11.023. Epub 2014 Dec 13.

PMID:
25514537
27.

Epithelial cells as alternative human biomatrices for comet assay.

Rojas E, Lorenzo Y, Haug K, Nicolaissen B, Valverde M.

Front Genet. 2014 Nov 28;5:386. doi: 10.3389/fgene.2014.00386. eCollection 2014. Review.

28.

Serotonin transporter polymorphisms predict response inhibition in healthy volunteers.

Landrø NI, Jonassen R, Clark L, Haug KB, Aker M, Bø R, Berg JP, Neumeister A, Stiles TC.

Neurosci Lett. 2015 Jan 1;584:109-12. doi: 10.1016/j.neulet.2014.10.006. Epub 2014 Oct 17.

29.

Can 'early programming' be partly explained by smoking? Results from a prospective, population-based cohort study.

Kvalvik LG, Skjaerven R, Klungsøyr K, Vollset SE, Haug K.

Paediatr Perinat Epidemiol. 2015 Jan;29(1):50-9. doi: 10.1111/ppe.12164. Epub 2014 Nov 24.

PMID:
25417973
30.

Effects of long-term exposure of 3,4-methylenedioxymethamphetamine (MDMA; "ecstasy") on neuronal transmitter transport, brain immuno-regulatory systems and progression of experimental periodontitis in rats.

Breivik T, Bogen IL, Haug KH, Fonnum F, Opstad PK, Eide DM, Myhre O.

Neurochem Int. 2014 Jun;72:30-6. doi: 10.1016/j.neuint.2014.04.002. Epub 2014 Apr 13.

PMID:
24726767
31.

Differential DNA methylation analysis of breast cancer reveals the impact of immune signaling in radiation therapy.

Halvorsen AR, Helland A, Fleischer T, Haug KM, Grenaker Alnaes GI, Nebdal D, Syljuåsen RG, Touleimat N, Busato F, Tost J, Saetersdal AB, Børresen-Dale AL, Kristensen V, Edvardsen H.

Int J Cancer. 2014 Nov 1;135(9):2085-95. doi: 10.1002/ijc.28862. Epub 2014 Apr 5.

32.

Serum bilirubin concentration in healthy adult North-Europeans is strictly controlled by the UGT1A1 TA-repeat variants.

Kringen MK, Piehler AP, Grimholt RM, Opdal MS, Haug KB, Urdal P.

PLoS One. 2014 Feb 28;9(2):e90248. doi: 10.1371/journal.pone.0090248. eCollection 2014.

33.

Global miRNA expression analysis of serous and clear cell ovarian carcinomas identifies differentially expressed miRNAs including miR-200c-3p as a prognostic marker.

Vilming Elgaaen B, Olstad OK, Haug KB, Brusletto B, Sandvik L, Staff AC, Gautvik KM, Davidson B.

BMC Cancer. 2014 Feb 11;14:80. doi: 10.1186/1471-2407-14-80.

34.

Diagnostic accuracy of random massively parallel sequencing for non-invasive prenatal detection of common autosomal aneuploidies: a collaborative study in Europe.

Stumm M, Entezami M, Haug K, Blank C, Wüstemann M, Schulze B, Raabe-Meyer G, Hempel M, Schelling M, Ostermayer E, Langer-Freitag S, Burkhardt T, Zimmermann R, Schleicher T, Weil B, Schöck U, Smerdka P, Grömminger S, Kumar Y, Hofmann W.

Prenat Diagn. 2014 Feb;34(2):185-91. doi: 10.1002/pd.4278. Epub 2013 Dec 12.

PMID:
24222400
35.

Patient experiences with interventions to reduce surgery cancellations: a qualitative study.

Hovlid E, von Plessen C, Haug K, Aslaksen AB, Bukve O.

BMC Surg. 2013 Aug 8;13:30. doi: 10.1186/1471-2482-13-30.

36.

A semi-physiological model of amyloid-β biosynthesis and clearance in human cerebrospinal fluid: a tool for alzheimer's disease research and drug development.

Haug KG, Staab A, Dansirikul C, Lehr T.

J Clin Pharmacol. 2013 Jul;53(7):691-8. doi: 10.1002/jcph.91. Epub 2013 May 27.

PMID:
23712554
37.

Smokers' increased risk for disability pension: social confounding or health-mediated effects? Gender-specific analyses of the Hordaland Health Study cohort.

Haukenes I, Riise T, Haug K, Farbu E, Maeland JG.

J Epidemiol Community Health. 2013 Sep;67(9):758-64. doi: 10.1136/jech-2012-202182. Epub 2013 May 25.

PMID:
23709663
38.

Dissemination of metabolomics results: role of MetaboLights and COSMOS.

Salek RM, Haug K, Steinbeck C.

Gigascience. 2013 May 17;2(1):8. doi: 10.1186/2047-217X-2-8.

39.

The MetaboLights repository: curation challenges in metabolomics.

Salek RM, Haug K, Conesa P, Hastings J, Williams M, Mahendraker T, Maguire E, González-Beltrán AN, Rocca-Serra P, Sansone SA, Steinbeck C.

Database (Oxford). 2013 Apr 29;2013:bat029. doi: 10.1093/database/bat029. Print 2013.

40.

How to create innovation by building the translation bridge from basic research into medicinal drugs: an industrial perspective.

Germann PG, Schuhmacher A, Harrison J, Law R, Haug K, Wong G.

Hum Genomics. 2013 Mar 5;7:5. doi: 10.1186/1479-7364-7-5.

41.

MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data.

Haug K, Salek RM, Conesa P, Hastings J, de Matos P, Rijnbeek M, Mahendraker T, Williams M, Neumann S, Rocca-Serra P, Maguire E, González-Beltrán A, Sansone SA, Griffin JL, Steinbeck C.

Nucleic Acids Res. 2013 Jan;41(Database issue):D781-6. doi: 10.1093/nar/gks1004. Epub 2012 Oct 29.

42.

Pharmacokinetic evaluation of visnagin and Ammi visnaga aqueous extract after oral administration in rats.

Haug KG, Weber B, Hochhaus G, Butterweck V.

Planta Med. 2012 Nov;78(17):1831-6. doi: 10.1055/s-0032-1315393. Epub 2012 Oct 24. Erratum in: Planta Med. 2013 Mar;79(3-4):312.

PMID:
23096256
43.

MetaboLights: towards a new COSMOS of metabolomics data management.

Steinbeck C, Conesa P, Haug K, Mahendraker T, Williams M, Maguire E, Rocca-Serra P, Sansone SA, Salek RM, Griffin JL.

Metabolomics. 2012 Oct;8(5):757-760. Epub 2012 Sep 25.

44.

Clinical transplantation of ex vivo expanded autologous limbal epithelial cells using a culture medium with human serum as single supplement: a retrospective case series.

Pathak M, Cholidis S, Haug K, Shahdadfar A, Moe MC, Nicolaissen B, Drolsum L.

Acta Ophthalmol. 2013 Dec;91(8):769-75. doi: 10.1111/j.1755-3768.2012.02521.x. Epub 2012 Aug 31.

45.

Sustainability of healthcare improvement: what can we learn from learning theory?

Hovlid E, Bukve O, Haug K, Aslaksen AB, von Plessen C.

BMC Health Serv Res. 2012 Aug 3;12:235. doi: 10.1186/1472-6963-12-235.

46.

Exposure to tobacco smoke in utero and subsequent plasma lipids, ApoB, and CRP among adult women in the MoBa cohort.

Cupul-Uicab LA, Skjaerven R, Haug K, Travlos GS, Wilson RE, Eggesbø M, Hoppin JA, Whitworth KW, Longnecker MP.

Environ Health Perspect. 2012 Nov;120(11):1532-7. doi: 10.1289/ehp.1104563. Epub 2012 Jul 19.

47.

Oxidative stress gradient in a medium during human corneal organ culture.

Johnsen-Soriano S, Haug K, Arnal E, Peris-Martinez C, Moe MC, Romero FJ, Nicolaissen B.

Mol Vis. 2012;18:1604-8. Epub 2012 Jun 16.

48.

A new pathway for elective surgery to reduce cancellation rates.

Hovlid E, Bukve O, Haug K, Aslaksen AB, von Plessen C.

BMC Health Serv Res. 2012 Jun 11;12:154. doi: 10.1186/1472-6963-12-154.

49.

A biobank of primary teeth within the Norwegian Mother and Child Cohort Study (MoBa): a resource for the future.

Tvinnereim HM, Lygre GB, Haug K, Schreuder P, Klock K.

Paediatr Perinat Epidemiol. 2012 May;26(3):264-71. doi: 10.1111/j.1365-3016.2012.01259.x. Epub 2012 Feb 7.

PMID:
22471685
50.

Self-reported smoking status and plasma cotinine concentrations among pregnant women in the Norwegian Mother and Child Cohort Study.

Kvalvik LG, Nilsen RM, Skjærven R, Vollset SE, Midttun O, Ueland PM, Haug K.

Pediatr Res. 2012 Jul;72(1):101-7. doi: 10.1038/pr.2012.36. Epub 2012 Mar 22.

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