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Items: 41

1.

Collection of Continuous Rotation MicroED Data from Ion Beam-Milled Crystals of Any Size.

Martynowycz MW, Zhao W, Hattne J, Jensen GJ, Gonen T.

Structure. 2019 Mar 5;27(3):545-548.e2. doi: 10.1016/j.str.2018.12.003. Epub 2019 Jan 17.

PMID:
30661853
2.

Structural basis for substrate binding and specificity of a sodium-alanine symporter AgcS.

Ma J, Lei HT, Reyes FE, Sanchez-Martinez S, Sarhan MF, Hattne J, Gonen T.

Proc Natl Acad Sci U S A. 2019 Feb 5;116(6):2086-2090. doi: 10.1073/pnas.1806206116. Epub 2019 Jan 18.

PMID:
30659158
3.

The CryoEM Method MicroED as a Powerful Tool for Small Molecule Structure Determination.

Jones CG, Martynowycz MW, Hattne J, Fulton TJ, Stoltz BM, Rodriguez JA, Nelson HM, Gonen T.

ACS Cent Sci. 2018 Nov 28;4(11):1587-1592. doi: 10.1021/acscentsci.8b00760. Epub 2018 Nov 2.

4.

MicroED structures of HIV-1 Gag CTD-SP1 reveal binding interactions with the maturation inhibitor bevirimat.

Purdy MD, Shi D, Chrustowicz J, Hattne J, Gonen T, Yeager M.

Proc Natl Acad Sci U S A. 2018 Dec 26;115(52):13258-13263. doi: 10.1073/pnas.1806806115. Epub 2018 Dec 10.

PMID:
30530702
5.

Free-electron laser data for multiple-particle fluctuation scattering analysis.

Pande K, Donatelli JJ, Malmerberg E, Foucar L, Poon BK, Sutter M, Botha S, Basu S, Bruce Doak R, Dörner K, Epp SW, Englert L, Fromme R, Hartmann E, Hartmann R, Hauser G, Hattne J, Hosseinizadeh A, Kassemeyer S, Lomb L, Montero SFC, Menzel A, Rolles D, Rudenko A, Seibert MM, Sierra RG, Schwander P, Ourmazd A, Fromme P, Sauter NK, Bogan M, Bozek J, Bostedt C, Schlichting I, Kerfeld CA, Zwart PH.

Sci Data. 2018 Oct 2;5:180201. doi: 10.1038/sdata.2018.201.

6.

Analysis of Global and Site-Specific Radiation Damage in Cryo-EM.

Hattne J, Shi D, Glynn C, Zee CT, Gallagher-Jones M, Martynowycz MW, Rodriguez JA, Gonen T.

Structure. 2018 May 1;26(5):759-766.e4. doi: 10.1016/j.str.2018.03.021. Epub 2018 Apr 26.

PMID:
29706530
7.

Towards in cellulo virus crystallography.

Duyvesteyn HME, Ginn HM, Pietilä MK, Wagner A, Hattne J, Grimes JM, Hirvonen E, Evans G, Parsy ML, Sauter NK, Brewster AS, Huiskonen JT, Stuart DI, Sutton G, Bamford DH.

Sci Rep. 2018 Feb 28;8(1):3771. doi: 10.1038/s41598-018-21693-3.

8.

Real-space analysis of radiation-induced specific changes with independent component analysis.

Borek D, Bromberg R, Hattne J, Otwinowski Z.

J Synchrotron Radiat. 2018 Mar 1;25(Pt 2):451-467. doi: 10.1107/S1600577517018148. Epub 2018 Feb 22.

9.

Flow-aligned, single-shot fiber diffraction using a femtosecond X-ray free-electron laser.

Popp D, Loh ND, Zorgati H, Ghoshdastider U, Liow LT, Ivanova MI, Larsson M, DePonte DP, Bean R, Beyerlein KR, Gati C, Oberthuer D, Arnlund D, Brändén G, Berntsen P, Cascio D, Chavas LMG, Chen JPJ, Ding K, Fleckenstein H, Gumprecht L, Harimoorthy R, Mossou E, Sawaya MR, Brewster AS, Hattne J, Sauter NK, Seibert M, Seuring C, Stellato F, Tilp T, Eisenberg DS, Messerschmidt M, Williams GJ, Koglin JE, Makowski L, Millane RP, Forsyth T, Boutet S, White TA, Barty A, Chapman H, Chen SL, Liang M, Neutze R, Robinson RC.

Cytoskeleton (Hoboken). 2017 Dec;74(12):472-481. doi: 10.1002/cm.21378. Epub 2017 Jun 19.

10.

Atomic-resolution structures from fragmented protein crystals with the cryoEM method MicroED.

de la Cruz MJ, Hattne J, Shi D, Seidler P, Rodriguez J, Reyes FE, Sawaya MR, Cascio D, Weiss SC, Kim SK, Hinck CS, Hinck AP, Calero G, Eisenberg D, Gonen T.

Nat Methods. 2017 Feb 13;14(4):399-402. doi: 10.1038/nmeth.4178.

11.

Atomic structures of fibrillar segments of hIAPP suggest tightly mated β-sheets are important for cytotoxicity.

Krotee P, Rodriguez JA, Sawaya MR, Cascio D, Reyes FE, Shi D, Hattne J, Nannenga BL, Oskarsson ME, Philipp S, Griner S, Jiang L, Glabe CG, Westermark GT, Gonen T, Eisenberg DS.

Elife. 2017 Jan 3;6. pii: e19273. doi: 10.7554/eLife.19273.

12.

Ab initio structure determination from prion nanocrystals at atomic resolution by MicroED.

Sawaya MR, Rodriguez J, Cascio D, Collazo MJ, Shi D, Reyes FE, Hattne J, Gonen T, Eisenberg DS.

Proc Natl Acad Sci U S A. 2016 Oct 4;113(40):11232-11236. Epub 2016 Sep 19.

13.

Atomic resolution structure determination by the cryo-EM method MicroED.

Liu S, Hattne J, Reyes FE, Sanchez-Martinez S, Jason de la Cruz M, Shi D, Gonen T.

Protein Sci. 2017 Jan;26(1):8-15. doi: 10.1002/pro.2989. Epub 2016 Aug 19. Review.

14.

Modeling truncated pixel values of faint reflections in MicroED images.

Hattne J, Shi D, de la Cruz MJ, Reyes FE, Gonen T.

J Appl Crystallogr. 2016 May 11;49(Pt 3):1029-1034. eCollection 2016 Jun 1.

15.

The collection of MicroED data for macromolecular crystallography.

Shi D, Nannenga BL, de la Cruz MJ, Liu J, Sawtelle S, Calero G, Reyes FE, Hattne J, Gonen T.

Nat Protoc. 2016 May;11(5):895-904. doi: 10.1038/nprot.2016.046. Epub 2016 Apr 14.

16.

Acoustic Injectors for Drop-On-Demand Serial Femtosecond Crystallography.

Roessler CG, Agarwal R, Allaire M, Alonso-Mori R, Andi B, Bachega JFR, Bommer M, Brewster AS, Browne MC, Chatterjee R, Cho E, Cohen AE, Cowan M, Datwani S, Davidson VL, Defever J, Eaton B, Ellson R, Feng Y, Ghislain LP, Glownia JM, Han G, Hattne J, Hellmich J, Héroux A, Ibrahim M, Kern J, Kuczewski A, Lemke HT, Liu P, Majlof L, McClintock WM, Myers S, Nelsen S, Olechno J, Orville AM, Sauter NK, Soares AS, Soltis SM, Song H, Stearns RG, Tran R, Tsai Y, Uervirojnangkoorn M, Wilmot CM, Yachandra V, Yano J, Yukl ET, Zhu D, Zouni A.

Structure. 2016 Apr 5;24(4):631-640. doi: 10.1016/j.str.2016.02.007. Epub 2016 Mar 17.

17.

Structure of the toxic core of α-synuclein from invisible crystals.

Rodriguez JA, Ivanova MI, Sawaya MR, Cascio D, Reyes FE, Shi D, Sangwan S, Guenther EL, Johnson LM, Zhang M, Jiang L, Arbing MA, Nannenga BL, Hattne J, Whitelegge J, Brewster AS, Messerschmidt M, Boutet S, Sauter NK, Gonen T, Eisenberg DS.

Nature. 2015 Sep 24;525(7570):486-90. doi: 10.1038/nature15368. Epub 2015 Sep 9.

18.

MicroED data collection and processing.

Hattne J, Reyes FE, Nannenga BL, Shi D, de la Cruz MJ, Leslie AG, Gonen T.

Acta Crystallogr A Found Adv. 2015 Jul;71(Pt 4):353-60. doi: 10.1107/S2053273315010669. Epub 2015 Jul 1.

19.

A revised partiality model and post-refinement algorithm for X-ray free-electron laser data.

Ginn HM, Brewster AS, Hattne J, Evans G, Wagner A, Grimes JM, Sauter NK, Sutton G, Stuart DI.

Acta Crystallogr D Biol Crystallogr. 2015 Jun;71(Pt 6):1400-10. doi: 10.1107/S1399004715006902. Epub 2015 May 23.

20.

Enabling X-ray free electron laser crystallography for challenging biological systems from a limited number of crystals.

Uervirojnangkoorn M, Zeldin OB, Lyubimov AY, Hattne J, Brewster AS, Sauter NK, Brunger AT, Weis WI.

Elife. 2015 Mar 17;4. doi: 10.7554/eLife.05421.

21.

Structure of CPV17 polyhedrin determined by the improved analysis of serial femtosecond crystallographic data.

Ginn HM, Messerschmidt M, Ji X, Zhang H, Axford D, Gildea RJ, Winter G, Brewster AS, Hattne J, Wagner A, Grimes JM, Evans G, Sauter NK, Sutton G, Stuart DI.

Nat Commun. 2015 Mar 9;6:6435. doi: 10.1038/ncomms7435.

22.

Indexing amyloid peptide diffraction from serial femtosecond crystallography: new algorithms for sparse patterns.

Brewster AS, Sawaya MR, Rodriguez J, Hattne J, Echols N, McFarlane HT, Cascio D, Adams PD, Eisenberg DS, Sauter NK.

Acta Crystallogr D Biol Crystallogr. 2015 Feb;71(Pt 2):357-66. doi: 10.1107/S1399004714026145. Epub 2015 Jan 23.

23.

Data Exploration Toolkit for serial diffraction experiments.

Zeldin OB, Brewster AS, Hattne J, Uervirojnangkoorn M, Lyubimov AY, Zhou Q, Zhao M, Weis WI, Sauter NK, Brunger AT.

Acta Crystallogr D Biol Crystallogr. 2015 Feb;71(Pt 2):352-6. doi: 10.1107/S1399004714025875. Epub 2015 Jan 23.

24.

Improved crystal orientation and physical properties from single-shot XFEL stills.

Sauter NK, Hattne J, Brewster AS, Echols N, Zwart PH, Adams PD.

Acta Crystallogr D Biol Crystallogr. 2014 Dec 1;70(Pt 12):3299-309. doi: 10.1107/S1399004714024134. Epub 2014 Nov 28.

25.

Goniometer-based femtosecond crystallography with X-ray free electron lasers.

Cohen AE, Soltis SM, González A, Aguila L, Alonso-Mori R, Barnes CO, Baxter EL, Brehmer W, Brewster AS, Brunger AT, Calero G, Chang JF, Chollet M, Ehrensberger P, Eriksson TL, Feng Y, Hattne J, Hedman B, Hollenbeck M, Holton JM, Keable S, Kobilka BK, Kovaleva EG, Kruse AC, Lemke HT, Lin G, Lyubimov AY, Manglik A, Mathews II, McPhillips SE, Nelson S, Peters JW, Sauter NK, Smith CA, Song J, Stevenson HP, Tsai Y, Uervirojnangkoorn M, Vinetsky V, Wakatsuki S, Weis WI, Zadvornyy OA, Zeldin OB, Zhu D, Hodgson KO.

Proc Natl Acad Sci U S A. 2014 Dec 2;111(48):17122-7. doi: 10.1073/pnas.1418733111. Epub 2014 Oct 31.

26.

Structure of catalase determined by MicroED.

Nannenga BL, Shi D, Hattne J, Reyes FE, Gonen T.

Elife. 2014 Oct 10;3:e03600. doi: 10.7554/eLife.03600.

27.

dxtbx: the diffraction experiment toolbox.

Parkhurst JM, Brewster AS, Fuentes-Montero L, Waterman DG, Hattne J, Ashton AW, Echols N, Evans G, Sauter NK, Winter G.

J Appl Crystallogr. 2014 Jul 19;47(Pt 4):1459-1465. eCollection 2014 Aug 1.

28.

Protein crystal structure obtained at 2.9 Å resolution from injecting bacterial cells into an X-ray free-electron laser beam.

Sawaya MR, Cascio D, Gingery M, Rodriguez J, Goldschmidt L, Colletier JP, Messerschmidt MM, Boutet S, Koglin JE, Williams GJ, Brewster AS, Nass K, Hattne J, Botha S, Doak RB, Shoeman RL, DePonte DP, Park HW, Federici BA, Sauter NK, Schlichting I, Eisenberg DS.

Proc Natl Acad Sci U S A. 2014 Sep 2;111(35):12769-74. doi: 10.1073/pnas.1413456111. Epub 2014 Aug 18.

29.

Taking snapshots of photosynthetic water oxidation using femtosecond X-ray diffraction and spectroscopy.

Kern J, Tran R, Alonso-Mori R, Koroidov S, Echols N, Hattne J, Ibrahim M, Gul S, Laksmono H, Sierra RG, Gildea RJ, Han G, Hellmich J, Lassalle-Kaiser B, Chatterjee R, Brewster AS, Stan CA, Glöckner C, Lampe A, DiFiore D, Milathianaki D, Fry AR, Seibert MM, Koglin JE, Gallo E, Uhlig J, Sokaras D, Weng TC, Zwart PH, Skinner DE, Bogan MJ, Messerschmidt M, Glatzel P, Williams GJ, Boutet S, Adams PD, Zouni A, Messinger J, Sauter NK, Bergmann U, Yano J, Yachandra VK.

Nat Commun. 2014 Jul 9;5:4371. doi: 10.1038/ncomms5371.

30.

Methods development for diffraction and spectroscopy studies of metalloenzymes at X-ray free-electron lasers.

Kern J, Hattne J, Tran R, Alonso-Mori R, Laksmono H, Gul S, Sierra RG, Rehanek J, Erko A, Mitzner R, Wernet P, Bergmann U, Sauter NK, Yachandra V, Yano J.

Philos Trans R Soc Lond B Biol Sci. 2014 Jul 17;369(1647):20130590. doi: 10.1098/rstb.2013.0590. Review.

31.

The Mn₄Ca photosynthetic water-oxidation catalyst studied by simultaneous X-ray spectroscopy and crystallography using an X-ray free-electron laser.

Tran R, Kern J, Hattne J, Koroidov S, Hellmich J, Alonso-Mori R, Sauter NK, Bergmann U, Messinger J, Zouni A, Yano J, Yachandra VK.

Philos Trans R Soc Lond B Biol Sci. 2014 Jul 17;369(1647):20130324. doi: 10.1098/rstb.2013.0324.

32.

Accurate macromolecular structures using minimal measurements from X-ray free-electron lasers.

Hattne J, Echols N, Tran R, Kern J, Gildea RJ, Brewster AS, Alonso-Mori R, Glöckner C, Hellmich J, Laksmono H, Sierra RG, Lassalle-Kaiser B, Lampe A, Han G, Gul S, DiFiore D, Milathianaki D, Fry AR, Miahnahri A, White WE, Schafer DW, Seibert MM, Koglin JE, Sokaras D, Weng TC, Sellberg J, Latimer MJ, Glatzel P, Zwart PH, Grosse-Kunstleve RW, Bogan MJ, Messerschmidt M, Williams GJ, Boutet S, Messinger J, Zouni A, Yano J, Bergmann U, Yachandra VK, Adams PD, Sauter NK.

Nat Methods. 2014 May;11(5):545-8. doi: 10.1038/nmeth.2887. Epub 2014 Mar 16. Erratum in: Nat Methods. 2015 Jul;12(7):692.

33.

L-Edge X-ray Absorption Spectroscopy of Dilute Systems Relevant to Metalloproteins Using an X-ray Free-Electron Laser.

Mitzner R, Rehanek J, Kern J, Gul S, Hattne J, Taguchi T, Alonso-Mori R, Tran R, Weniger C, Schröder H, Quevedo W, Laksmono H, Sierra RG, Han G, Lassalle-Kaiser B, Koroidov S, Kubicek K, Schreck S, Kunnus K, Brzhezinskaya M, Firsov A, Minitti MP, Turner JJ, Moeller S, Sauter NK, Bogan MJ, Nordlund D, Schlotter WF, Messinger J, Borovik A, Techert S, de Groot FM, Föhlisch A, Erko A, Bergmann U, Yachandra VK, Wernet P, Yano J.

J Phys Chem Lett. 2013 Oct 9;4(21):3641-3647.

34.

New Python-based methods for data processing.

Sauter NK, Hattne J, Grosse-Kunstleve RW, Echols N.

Acta Crystallogr D Biol Crystallogr. 2013 Jul;69(Pt 7):1274-82. doi: 10.1107/S0907444913000863. Epub 2013 Jun 18.

35.

Simultaneous femtosecond X-ray spectroscopy and diffraction of photosystem II at room temperature.

Kern J, Alonso-Mori R, Tran R, Hattne J, Gildea RJ, Echols N, Glöckner C, Hellmich J, Laksmono H, Sierra RG, Lassalle-Kaiser B, Koroidov S, Lampe A, Han G, Gul S, Difiore D, Milathianaki D, Fry AR, Miahnahri A, Schafer DW, Messerschmidt M, Seibert MM, Koglin JE, Sokaras D, Weng TC, Sellberg J, Latimer MJ, Grosse-Kunstleve RW, Zwart PH, White WE, Glatzel P, Adams PD, Bogan MJ, Williams GJ, Boutet S, Messinger J, Zouni A, Sauter NK, Yachandra VK, Bergmann U, Yano J.

Science. 2013 Apr 26;340(6131):491-5. doi: 10.1126/science.1234273. Epub 2013 Feb 14.

36.

Energy-dispersive X-ray emission spectroscopy using an X-ray free-electron laser in a shot-by-shot mode.

Alonso-Mori R, Kern J, Gildea RJ, Sokaras D, Weng TC, Lassalle-Kaiser B, Tran R, Hattne J, Laksmono H, Hellmich J, Glöckner C, Echols N, Sierra RG, Schafer DW, Sellberg J, Kenney C, Herbst R, Pines J, Hart P, Herrmann S, Grosse-Kunstleve RW, Latimer MJ, Fry AR, Messerschmidt MM, Miahnahri A, Seibert MM, Zwart PH, White WE, Adams PD, Bogan MJ, Boutet S, Williams GJ, Zouni A, Messinger J, Glatzel P, Sauter NK, Yachandra VK, Yano J, Bergmann U.

Proc Natl Acad Sci U S A. 2012 Nov 20;109(47):19103-7. doi: 10.1073/pnas.1211384109. Epub 2012 Nov 5.

37.

Nanoflow electrospinning serial femtosecond crystallography.

Sierra RG, Laksmono H, Kern J, Tran R, Hattne J, Alonso-Mori R, Lassalle-Kaiser B, Glöckner C, Hellmich J, Schafer DW, Echols N, Gildea RJ, Grosse-Kunstleve RW, Sellberg J, McQueen TA, Fry AR, Messerschmidt MM, Miahnahri A, Seibert MM, Hampton CY, Starodub D, Loh ND, Sokaras D, Weng TC, Zwart PH, Glatzel P, Milathianaki D, White WE, Adams PD, Williams GJ, Boutet S, Zouni A, Messinger J, Sauter NK, Bergmann U, Yano J, Yachandra VK, Bogan MJ.

Acta Crystallogr D Biol Crystallogr. 2012 Nov;68(Pt 11):1584-7. doi: 10.1107/S0907444912038152. Epub 2012 Oct 18.

38.

Room temperature femtosecond X-ray diffraction of photosystem II microcrystals.

Kern J, Alonso-Mori R, Hellmich J, Tran R, Hattne J, Laksmono H, Glöckner C, Echols N, Sierra RG, Sellberg J, Lassalle-Kaiser B, Gildea RJ, Glatzel P, Grosse-Kunstleve RW, Latimer MJ, McQueen TA, DiFiore D, Fry AR, Messerschmidt M, Miahnahri A, Schafer DW, Seibert MM, Sokaras D, Weng TC, Zwart PH, White WE, Adams PD, Bogan MJ, Boutet S, Williams GJ, Messinger J, Sauter NK, Zouni A, Bergmann U, Yano J, Yachandra VK.

Proc Natl Acad Sci U S A. 2012 Jun 19;109(25):9721-6. doi: 10.1073/pnas.1204598109. Epub 2012 Jun 4.

39.

A moment invariant for evaluating the chirality of three-dimensional objects.

Hattne J, Lamzin VS.

J R Soc Interface. 2011 Jan 6;8(54):144-51. doi: 10.1098/rsif.2010.0297. Epub 2010 Aug 4.

40.

Pattern-recognition-based detection of planar objects in three-dimensional electron-density maps.

Hattne J, Lamzin VS.

Acta Crystallogr D Biol Crystallogr. 2008 Aug;D64(Pt 8):834-42. doi: 10.1107/S0907444908014327. Epub 2008 Jul 17.

PMID:
18645232
41.

Stochastic reaction-diffusion simulation with MesoRD.

Hattne J, Fange D, Elf J.

Bioinformatics. 2005 Jun 15;21(12):2923-4. Epub 2005 Apr 7.

PMID:
15817692

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