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Items: 1 to 50 of 113

1.

Components of genetic associations across 2,138 phenotypes in the UK Biobank highlight adipocyte biology.

Tanigawa Y, Li J, Justesen JM, Horn H, Aguirre M, DeBoever C, Chang C, Narasimhan B, Lage K, Hastie T, Park CY, Bejerano G, Ingelsson E, Rivas MA.

Nat Commun. 2019 Sep 6;10(1):4064. doi: 10.1038/s41467-019-11953-9.

2.

Deep Learning Convolutional Neural Networks for the Automatic Quantification of Muscle Fat Infiltration Following Whiplash Injury.

Weber KA, Smith AC, Wasielewski M, Eghtesad K, Upadhyayula PA, Wintermark M, Hastie TJ, Parrish TB, Mackey S, Elliott JM.

Sci Rep. 2019 May 28;9(1):7973. doi: 10.1038/s41598-019-44416-8.

3.

Saturating Splines and Feature Selection.

Boyd N, Hastie T, Boyd S, Recht B, Jordan MI.

J Mach Learn Res. 2018 Apr;18. pii: 197.

4.

Association of cardiovascular events and lipoprotein particle size: Development of a risk score based on functional data analysis.

Rowland CM, Shiffman D, Caulfield M, Garcia V, Melander O, Hastie T.

PLoS One. 2019 Mar 7;14(3):e0213172. doi: 10.1371/journal.pone.0213172. eCollection 2019.

5.

Automated Survival Prediction in Metastatic Cancer Patients Using High-Dimensional Electronic Medical Record Data.

Gensheimer MF, Henry AS, Wood DJ, Hastie TJ, Aggarwal S, Dudley SA, Pradhan P, Banerjee I, Cho E, Ramchandran K, Pollom E, Koong AC, Rubin DL, Chang DT.

J Natl Cancer Inst. 2018 Oct 21. doi: 10.1093/jnci/djy178. [Epub ahead of print]

PMID:
30346554
6.

Machine learning in human movement biomechanics: Best practices, common pitfalls, and new opportunities.

Halilaj E, Rajagopal A, Fiterau M, Hicks JL, Hastie TJ, Delp SL.

J Biomech. 2018 Nov 16;81:1-11. doi: 10.1016/j.jbiomech.2018.09.009. Epub 2018 Sep 13. Review.

PMID:
30279002
7.

Modeling and predicting osteoarthritis progression: data from the osteoarthritis initiative.

Halilaj E, Le Y, Hicks JL, Hastie TJ, Delp SL.

Osteoarthritis Cartilage. 2018 Dec;26(12):1643-1650. doi: 10.1016/j.joca.2018.08.003. Epub 2018 Aug 18.

PMID:
30130590
8.

Proteomic analysis of monolayer-integrated proteins on lipid droplets identifies amphipathic interfacial α-helical membrane anchors.

Pataki CI, Rodrigues J, Zhang L, Qian J, Efron B, Hastie T, Elias JE, Levitt M, Kopito RR.

Proc Natl Acad Sci U S A. 2018 Aug 28;115(35):E8172-E8180. doi: 10.1073/pnas.1807981115. Epub 2018 Aug 13.

9.

Physical activity is associated with changes in knee cartilage microstructure.

Halilaj E, Hastie TJ, Gold GE, Delp SL.

Osteoarthritis Cartilage. 2018 Jun;26(6):770-774. doi: 10.1016/j.joca.2018.03.009. Epub 2018 Mar 29.

10.

Gene expression profiling of low-grade endometrial stromal sarcoma indicates fusion protein-mediated activation of the Wnt signaling pathway.

Przybyl J, Kidzinski L, Hastie T, Debiec-Rychter M, Nusse R, van de Rijn M.

Gynecol Oncol. 2018 May;149(2):388-393. doi: 10.1016/j.ygyno.2018.03.007. Epub 2018 Mar 12.

PMID:
29544705
11.

Some methods for heterogeneous treatment effect estimation in high dimensions.

Powers S, Qian J, Jung K, Schuler A, Shah NH, Hastie T, Tibshirani R.

Stat Med. 2018 May 20;37(11):1767-1787. doi: 10.1002/sim.7623. Epub 2018 Mar 6.

12.

Nuclear penalized multinomial regression with an application to predicting at bat outcomes in baseball.

Powers S, Hastie T, Tibshirani R.

Stat Modelling. 2018;18(5-6):388-410. doi: 10.1177/1471082X18777669. Epub 2018 Jun 11.

13.

CONFOUNDER ADJUSTMENT IN MULTIPLE HYPOTHESIS TESTING.

Wang J, Zhao Q, Hastie T, Owen AB.

Ann Stat. 2017 Oct;45(5):1863-1894. doi: 10.1214/16-AOS1511. Epub 2017 Oct 31.

14.

FIRE: functional inference of genetic variants that regulate gene expression.

Ioannidis NM, Davis JR, DeGorter MK, Larson NB, McDonnell SK, French AJ, Battle AJ, Hastie TJ, Thibodeau SN, Montgomery SB, Bustamante CD, Sieh W, Whittemore AS.

Bioinformatics. 2017 Dec 15;33(24):3895-3901. doi: 10.1093/bioinformatics/btx534.

15.

Combinatorial Extracellular Matrix Microenvironments for Probing Endothelial Differentiation of Human Pluripotent Stem Cells.

Hou L, Kim JJ, Wanjare M, Patlolla B, Coller J, Natu V, Hastie TJ, Huang NF.

Sci Rep. 2017 Jul 26;7(1):6551. doi: 10.1038/s41598-017-06986-3.

16.

Prognostic significance of early aortic remodeling in acute uncomplicated type B aortic dissection and intramural hematoma.

Sailer AM, Nelemans PJ, Hastie TJ, Chin AS, Huininga M, Chiu P, Fischbein MP, Dake MD, Miller DC, Schurink GW, Fleischmann D.

J Thorac Cardiovasc Surg. 2017 Oct;154(4):1192-1200. doi: 10.1016/j.jtcvs.2017.04.064. Epub 2017 May 16.

17.

Sparse EEG/MEG source estimation via a group lasso.

Lim M, Ales JM, Cottereau BR, Hastie T, Norcia AM.

PLoS One. 2017 Jun 12;12(6):e0176835. doi: 10.1371/journal.pone.0176835. eCollection 2017.

18.

Accuracy in Wrist-Worn, Sensor-Based Measurements of Heart Rate and Energy Expenditure in a Diverse Cohort.

Shcherbina A, Mattsson CM, Waggott D, Salisbury H, Christle JW, Hastie T, Wheeler MT, Ashley EA.

J Pers Med. 2017 May 24;7(2). pii: E3. doi: 10.3390/jpm7020003.

19.

Selection of effects in Cox frailty models by regularization methods.

Groll A, Hastie T, Tutz G.

Biometrics. 2017 Sep;73(3):846-856. doi: 10.1111/biom.12637. Epub 2017 Jan 13.

20.

Construction of longitudinal prediction targets using semisupervised learning.

Jo B, Findling RL, Hastie TJ, Youngstrom EA, Wang CP, Arnold LE, Fristad MA, Frazier TW, Birmaher B, Gill MK, Horwitz SM.

Stat Methods Med Res. 2018 Sep;27(9):2674-2693. doi: 10.1177/0962280216684163. Epub 2017 Jan 8.

21.

Synergistic drug combinations from electronic health records and gene expression.

Low YS, Daugherty AC, Schroeder EA, Chen W, Seto T, Weber S, Lim M, Hastie T, Mathur M, Desai M, Farrington C, Radin AA, Sirota M, Kenkare P, Thompson CA, Yu PP, Gomez SL, Sledge GW Jr, Kurian AW, Shah NH.

J Am Med Inform Assoc. 2017 May 1;24(3):565-576. doi: 10.1093/jamia/ocw161.

22.

Targeted use of growth mixture modeling: a learning perspective.

Jo B, Findling RL, Wang CP, Hastie TJ, Youngstrom EA, Arnold LE, Fristad MA, Horwitz SM.

Stat Med. 2017 Feb 20;36(4):671-686. doi: 10.1002/sim.7152. Epub 2016 Nov 2.

23.

Human amygdala engagement moderated by early life stress exposure is a biobehavioral target for predicting recovery on antidepressants.

Goldstein-Piekarski AN, Korgaonkar MS, Green E, Suppes T, Schatzberg AF, Hastie T, Nemeroff CB, Williams LM.

Proc Natl Acad Sci U S A. 2016 Oct 18;113(42):11955-11960. Epub 2016 Oct 10.

24.

REVEL: An Ensemble Method for Predicting the Pathogenicity of Rare Missense Variants.

Ioannidis NM, Rothstein JH, Pejaver V, Middha S, McDonnell SK, Baheti S, Musolf A, Li Q, Holzinger E, Karyadi D, Cannon-Albright LA, Teerlink CC, Stanford JL, Isaacs WB, Xu J, Cooney KA, Lange EM, Schleutker J, Carpten JD, Powell IJ, Cussenot O, Cancel-Tassin G, Giles GG, MacInnis RJ, Maier C, Hsieh CL, Wiklund F, Catalona WJ, Foulkes WD, Mandal D, Eeles RA, Kote-Jarai Z, Bustamante CD, Schaid DJ, Hastie T, Ostrander EA, Bailey-Wilson JE, Radivojac P, Thibodeau SN, Whittemore AS, Sieh W.

Am J Hum Genet. 2016 Oct 6;99(4):877-885. doi: 10.1016/j.ajhg.2016.08.016. Epub 2016 Sep 22.

25.

Combinatorial extracellular matrix microenvironments promote survival and phenotype of human induced pluripotent stem cell-derived endothelial cells in hypoxia.

Hou L, Coller J, Natu V, Hastie TJ, Huang NF.

Acta Biomater. 2016 Oct 15;44:188-99. doi: 10.1016/j.actbio.2016.08.003. Epub 2016 Aug 4.

26.

Evaluating quantitative proton-density-mapping methods.

Mezer A, Rokem A, Berman S, Hastie T, Wandell BA.

Hum Brain Mapp. 2016 Oct;37(10):3623-35. doi: 10.1002/hbm.23264. Epub 2016 Jun 6.

27.

Effective degrees of freedom: a flawed metaphor.

Janson L, Fithian W, Hastie TJ.

Biometrika. 2015 Jun 1;102(2):479-485. Epub 2015 May 4.

28.

ZeitZeiger: supervised learning for high-dimensional data from an oscillatory system.

Hughey JJ, Hastie T, Butte AJ.

Nucleic Acids Res. 2016 May 5;44(8):e80. doi: 10.1093/nar/gkw030. Epub 2016 Jan 26.

29.

Effect of long-term antibiotic use on weight in adolescents with acne.

Contopoulos-Ioannidis DG, Ley C, Wang W, Ma T, Olson C, Shi X, Luft HS, Hastie T, Parsonnet J.

J Antimicrob Chemother. 2016 Apr;71(4):1098-105. doi: 10.1093/jac/dkv455. Epub 2016 Jan 17.

30.

Learning interactions via hierarchical group-lasso regularization.

Lim M, Hastie T.

J Comput Graph Stat. 2015;24(3):627-654. Epub 2015 Sep 16.

31.

CUSTOMIZED TRAINING WITH AN APPLICATION TO MASS SPECTROMETRIC IMAGING OF CANCER TISSUE.

Powers S, Hastie T, Tibshirani R.

Ann Appl Stat. 2015 Dec;9(4):1709-1725. doi: 10.1214/15-AOAS866. Epub 2016 Jan 28.

32.

The mobilize center: an NIH big data to knowledge center to advance human movement research and improve mobility.

Ku JP, Hicks JL, Hastie T, Leskovec J, Ré C, Delp SL.

J Am Med Inform Assoc. 2015 Nov;22(6):1120-5. doi: 10.1093/jamia/ocv071. Epub 2015 Aug 13.

33.

Learning the Structure of Mixed Graphical Models.

Lee JD, Hastie TJ.

J Comput Graph Stat. 2015 Jan 1;24(1):230-253.

34.

Clinically Relevant Molecular Subtypes in Leiomyosarcoma.

Guo X, Jo VY, Mills AM, Zhu SX, Lee CH, Espinosa I, Nucci MR, Varma S, Forgó E, Hastie T, Anderson S, Ganjoo K, Beck AH, West RB, Fletcher CD, van de Rijn M.

Clin Cancer Res. 2015 Aug 1;21(15):3501-11. doi: 10.1158/1078-0432.CCR-14-3141. Epub 2015 Apr 20.

35.

Bias correction in species distribution models: pooling survey and collection data for multiple species.

Fithian W, Elith J, Hastie T, Keith DA.

Methods Ecol Evol. 2015 Apr;6(4):424-438. Epub 2014 Oct 10.

36.

Detecting clinically meaningful biomarkers with repeated measurements: An illustration with electronic health records.

Goldstein BA, Assimes T, Winkelmayer WC, Hastie T.

Biometrics. 2015 Jun;71(2):478-86. doi: 10.1111/biom.12283. Epub 2015 Feb 4.

37.

Confidence Intervals for Random Forests: The Jackknife and the Infinitesimal Jackknife.

Wager S, Hastie T, Efron B.

J Mach Learn Res. 2014 Jan;15(1):1625-1651.

38.

Matrix Completion and Low-Rank SVD via Fast Alternating Least Squares.

Hastie T, Mazumder R, Lee JD, Zadeh R.

J Mach Learn Res. 2015;16:3367-3402.

39.

Finite-Sample Equivalence in Statistical Models for Presence-Only Data.

Fithian W, Hastie T.

Ann Appl Stat. 2013 Dec 1;7(4):1917-1939.

40.

LOCAL CASE-CONTROL SAMPLING: EFFICIENT SUBSAMPLING IN IMBALANCED DATA SETS.

Fithian W, Hastie T.

Ann Stat. 2014 Oct 1;42(5):1693-1724.

41.

Assessing the significance of global and local correlations under spatial autocorrelation: a nonparametric approach.

Viladomat J, Mazumder R, McInturff A, McCauley DJ, Hastie T.

Biometrics. 2014 Jun;70(2):409-18. doi: 10.1111/biom.12139. Epub 2014 Jan 21.

42.

Inference from presence-only data; the ongoing controversy.

Hastie T, Fithian W.

Ecography (Cop.). 2013 Aug 1;36(8):864-867.

43.

The graphical lasso: New insights and alternatives.

Mazumder R, Hastie T.

Electron J Stat. 2012 Nov 9;6:2125-2149.

44.

Coronary risk assessment among intermediate risk patients using a clinical and biomarker based algorithm developed and validated in two population cohorts.

Cross DS, McCarty CA, Hytopoulos E, Beggs M, Nolan N, Harrington DS, Hastie T, Tibshirani R, Tracy RP, Psaty BM, McClelland R, Tsao PS, Quertermous T.

Curr Med Res Opin. 2012 Nov;28(11):1819-30. doi: 10.1185/03007995.2012.742878.

45.

No increased mortality with early aortic aneurysm disease.

Mell M, White JJ, Hill BB, Hastie T, Dalman RL; Stanford Abdominal Aortic Aneurysm Specialized Center of Clinically Oriented Research Investigators.

J Vasc Surg. 2012 Nov;56(5):1246-51. doi: 10.1016/j.jvs.2012.04.023. Epub 2012 Jul 24.

46.

Strong rules for discarding predictors in lasso-type problems.

Tibshirani R, Bien J, Friedman J, Hastie T, Simon N, Taylor J, Tibshirani RJ.

J R Stat Soc Series B Stat Methodol. 2012 Mar;74(2):245-266.

47.
48.

A fused lasso latent feature model for analyzing multi-sample aCGH data.

Nowak G, Hastie T, Pollack JR, Tibshirani R.

Biostatistics. 2011 Oct;12(4):776-91. doi: 10.1093/biostatistics/kxr012. Epub 2011 Jun 3.

49.

Regularization Paths for Cox's Proportional Hazards Model via Coordinate Descent.

Simon N, Friedman J, Hastie T, Tibshirani R.

J Stat Softw. 2011 Mar;39(5):1-13.

50.

SparseNet: Coordinate Descent With Nonconvex Penalties.

Mazumder R, Friedman JH, Hastie T.

J Am Stat Assoc. 2011;106(495):1125-1138.

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