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The EGFR T790M Mutation Is Acquired through AICDA-Mediated Deamination of 5-Methylcytosine following TKI Treatment in Lung Cancer.

El Kadi N, Wang L, Davis A, Korkaya H, Cooke A, Vadnala V, Brown NA, Betz BL, Cascalho M, Kalemkerian GP, Hassan KA.

Cancer Res. 2018 Dec 15;78(24):6728-6735. doi: 10.1158/0008-5472.CAN-17-3370. Epub 2018 Oct 17.


The pleiotropic effects of TNFα in breast cancer subtypes is regulated by TNFAIP3/A20.

Lee E, Ouzounova M, Piranlioglu R, Ma MT, Guzel M, Marasco D, Chadli A, Gestwicki JE, Cowell JK, Wicha MS, Hassan KA, Korkaya H.

Oncogene. 2018 Aug 30. doi: 10.1038/s41388-018-0472-0. [Epub ahead of print]


The Incidence of Hypoglycemia among Insulin-Treated Patients with Type 1 or Type 2 Diabetes: Bangladeshi Cohort of International Operations-Hypoglycemia Assessment Tool Study.

Pathan MF, Fariduddin M, Nazimuddin K, Mollah AS, Islam Siddiqui MN, Hassan KA, Ferdous HS, Rahman MH, Ashrafuzzaman SM, Sobhan MJ, E-Tanvir Haider MR, Amin MF.

Indian J Endocrinol Metab. 2018 May-Jun;22(3):379-386. doi: 10.4103/ijem.IJEM_545_17.


Resistance to pentamidine is mediated by AdeAB, regulated by AdeRS, and influenced by growth conditions in Acinetobacter baumannii ATCC 17978.

Adams FG, Stroeher UH, Hassan KA, Marri S, Brown MH.

PLoS One. 2018 May 11;13(5):e0197412. doi: 10.1371/journal.pone.0197412. eCollection 2018.


Genome-based evolutionary history of Pseudomonas spp.

Hesse C, Schulz F, Bull CT, Shaffer BT, Yan Q, Shapiro N, Hassan KA, Varghese N, Elbourne LDH, Paulsen IT, Kyrpides N, Woyke T, Loper JE.

Environ Microbiol. 2018 Apr 6. doi: 10.1111/1462-2920.14130. [Epub ahead of print]


Small cell lung cancer heterogeneity: elevated a Notch above the Rest!

Hassan KA.

J Thorac Dis. 2018 Feb;10(2):554-556. doi: 10.21037/jtd.2018.01.104. No abstract available.


Regulation of the aceI multidrug efflux pump gene in Acinetobacter baumannii.

Liu Q, Hassan KA, Ashwood HE, Gamage HKAH, Li L, Mabbutt BC, Paulsen IT.

J Antimicrob Chemother. 2018 Jun 1;73(6):1492-1500. doi: 10.1093/jac/dky034.


Pacing across the membrane: the novel PACE family of efflux pumps is widespread in Gram-negative pathogens.

Hassan KA, Liu Q, Elbourne LDH, Ahmad I, Sharples D, Naidu V, Chan CL, Li L, Harborne SPD, Pokhrel A, Postis VLG, Goldman A, Henderson PJF, Paulsen IT.

Res Microbiol. 2018 Sep - Oct;169(7-8):450-454. doi: 10.1016/j.resmic.2018.01.001. Epub 2018 Feb 2. Review.


A Transcriptomic Approach to Identify Novel Drug Efflux Pumps in Bacteria.

Li L, Tetu SG, Paulsen IT, Hassan KA.

Methods Mol Biol. 2018;1700:221-235. doi: 10.1007/978-1-4939-7454-2_12.


Physical enrichment of transposon mutants from saturation mutant libraries using the TraDISort approach.

Paulsen IT, Cain AK, Hassan KA.

Mob Genet Elements. 2017 Mar 31;7(3):1-7. doi: 10.1080/2159256X.2017.1313805. eCollection 2017.


Effect of Midtreatment PET/CT-Adapted Radiation Therapy With Concurrent Chemotherapy in Patients With Locally Advanced Non-Small-Cell Lung Cancer: A Phase 2 Clinical Trial.

Kong FM, Ten Haken RK, Schipper M, Frey KA, Hayman J, Gross M, Ramnath N, Hassan KA, Matuszak M, Ritter T, Bi N, Wang W, Orringer M, Cease KB, Lawrence TS, Kalemkerian GP.

JAMA Oncol. 2017 Oct 1;3(10):1358-1365. doi: 10.1001/jamaoncol.2017.0982.


The putative drug efflux systems of the Bacillus cereus group.

Hassan KA, Fagerlund A, Elbourne LDH, Vörös A, Kroeger JK, Simm R, Tourasse NJ, Finke S, Henderson PJF, Økstad OA, Paulsen IT, Kolstø AB.

PLoS One. 2017 May 4;12(5):e0176188. doi: 10.1371/journal.pone.0176188. eCollection 2017.


A mixed-methods study of maternal near miss and death after emergency cesarean delivery at a referral hospital in Somaliland.

Abdillahi HA, Hassan KA, Kiruja J, Osman F, Egal JA, Klingberg-Allvin M, Erlandsson K.

Int J Gynaecol Obstet. 2017 Jul;138(1):119-124. doi: 10.1002/ijgo.12176. Epub 2017 May 2.


Monocytic and granulocytic myeloid derived suppressor cells differentially regulate spatiotemporal tumour plasticity during metastatic cascade.

Ouzounova M, Lee E, Piranlioglu R, El Andaloussi A, Kolhe R, Demirci MF, Marasco D, Asm I, Chadli A, Hassan KA, Thangaraju M, Zhou G, Arbab AS, Cowell JK, Korkaya H.

Nat Commun. 2017 Apr 6;8:14979. doi: 10.1038/ncomms14979.


Zinc stress induces copper depletion in Acinetobacter baumannii.

Hassan KA, Pederick VG, Elbourne LD, Paulsen IT, Paton JC, McDevitt CA, Eijkelkamp BA.

BMC Microbiol. 2017 Mar 11;17(1):59. doi: 10.1186/s12866-017-0965-y.


TransportDB 2.0: a database for exploring membrane transporters in sequenced genomes from all domains of life.

Elbourne LD, Tetu SG, Hassan KA, Paulsen IT.

Nucleic Acids Res. 2017 Jan 4;45(D1):D320-D324. doi: 10.1093/nar/gkw1068. Epub 2016 Nov 28.


Fluorescence-Based Flow Sorting in Parallel with Transposon Insertion Site Sequencing Identifies Multidrug Efflux Systems in Acinetobacter baumannii.

Hassan KA, Cain AK, Huang T, Liu Q, Elbourne LD, Boinett CJ, Brzoska AJ, Li L, Ostrowski M, Nhu NT, Nhu Tdo H, Baker S, Parkhill J, Paulsen IT.

MBio. 2016 Sep 6;7(5). pii: e01200-16. doi: 10.1128/mBio.01200-16.


Disruption of Transporters Affiliated with Enantio-Pyochelin Biosynthesis Gene Cluster of Pseudomonas protegens Pf-5 Has Pleiotropic Effects.

Lim CK, Penesyan A, Hassan KA, Loper JE, Paulsen IT.

PLoS One. 2016 Jul 21;11(7):e0159884. doi: 10.1371/journal.pone.0159884. eCollection 2016.


Rapid multiplexed phenotypic screening identifies drug resistance functions for three novel efflux pumps in Acinetobacter baumannii.

Li L, Hassan KA, Brown MH, Paulsen IT.

J Antimicrob Chemother. 2016 May;71(5):1223-32. doi: 10.1093/jac/dkv460. Epub 2016 Jan 31.


Insights on virulence from the complete genome of Staphylococcus capitis.

Cameron DR, Jiang JH, Hassan KA, Elbourne LD, Tuck KL, Paulsen IT, Peleg AY.

Front Microbiol. 2015 Sep 23;6:980. doi: 10.3389/fmicb.2015.00980. eCollection 2015.


Comparative genomics between human and animal associated subspecies of the Mycobacterium avium complex: a basis for pathogenicity.

Timms VJ, Hassan KA, Mitchell HM, Neilan BA.

BMC Genomics. 2015 Sep 15;16:695. doi: 10.1186/s12864-015-1889-2.


Clinical outcomes of acute kidney injury patients treated in a single-center, sub-urban satellite hospital.

Mohd Nor FS, Draman CR, Seman MR, Abd Manaf N, Abd Ghani AS, Hassan KA.

Saudi J Kidney Dis Transpl. 2015 Jul-Aug;26(4):725-32. doi: 10.4103/1319-2442.160273.


An ace up their sleeve: a transcriptomic approach exposes the AceI efflux protein of Acinetobacter baumannii and reveals the drug efflux potential hidden in many microbial pathogens.

Hassan KA, Elbourne LD, Li L, Gamage HK, Liu Q, Jackson SM, Sharples D, Kolstø AB, Henderson PJ, Paulsen IT.

Front Microbiol. 2015 Apr 22;6:333. doi: 10.3389/fmicb.2015.00333. eCollection 2015.


Notch reporter activity in breast cancer cell lines identifies a subset of cells with stem cell activity.

D'Angelo RC, Ouzounova M, Davis A, Choi D, Tchuenkam SM, Kim G, Luther T, Quraishi AA, Senbabaoglu Y, Conley SJ, Clouthier SG, Hassan KA, Wicha MS, Korkaya H.

Mol Cancer Ther. 2015 Mar;14(3):779-787. doi: 10.1158/1535-7163.MCT-14-0228. Epub 2015 Feb 11.


Homologs of the Acinetobacter baumannii AceI transporter represent a new family of bacterial multidrug efflux systems.

Hassan KA, Liu Q, Henderson PJ, Paulsen IT.

MBio. 2015 Feb 10;6(1). pii: e01982-14. doi: 10.1128/mBio.01982-14.


The Rsm regulon of plant growth-promoting Pseudomonas fluorescens SS101: role of small RNAs in regulation of lipopeptide biosynthesis.

Song C, van der Voort M, van de Mortel J, Hassan KA, Elbourne LD, Paulsen IT, Loper JE, Raaijmakers JM.

Microb Biotechnol. 2015 Mar;8(2):296-310. doi: 10.1111/1751-7915.12190. Epub 2014 Dec 9.


Genomic analyses of Clostridium perfringens isolates from five toxinotypes.

Hassan KA, Elbourne LD, Tetu SG, Melville SB, Rood JI, Paulsen IT.

Res Microbiol. 2015 May;166(4):255-63. doi: 10.1016/j.resmic.2014.10.003. Epub 2014 Oct 16. Review.


Comparative analysis of surface-exposed virulence factors of Acinetobacter baumannii.

Eijkelkamp BA, Stroeher UH, Hassan KA, Paulsen IT, Brown MH.

BMC Genomics. 2014 Nov 25;15:1020. doi: 10.1186/1471-2164-15-1020.


SecDF as part of the Sec-translocase facilitates efficient secretion of Bacillus cereus toxins and cell wall-associated proteins.

Vörös A, Simm R, Slamti L, McKay MJ, Hegna IK, Nielsen-LeRoux C, Hassan KA, Paulsen IT, Lereclus D, Økstad OA, Molloy MP, Kolstø AB.

PLoS One. 2014 Aug 1;9(8):e103326. doi: 10.1371/journal.pone.0103326. eCollection 2014. Erratum in: PLoS One. 2014;9(10):e111160.


Genome Sequence of the Neurotoxigenic Clostridium butyricum Strain 5521.

Hassan KA, Elbourne LD, Tetu SG, Johnson EA, Paulsen IT.

Genome Announc. 2014 Jun 26;2(3). pii: e00632-14. doi: 10.1128/genomeA.00632-14.


Biolog Phenotype Microarrays for phenotypic characterization of microbial cells.

Mackie AM, Hassan KA, Paulsen IT, Tetu SG.

Methods Mol Biol. 2014;1096:123-30. doi: 10.1007/978-1-62703-712-9_10.


Quantitative PCR for detection of mRNA and gDNA in environmental isolates.

Brzoska AJ, Hassan KA.

Methods Mol Biol. 2014;1096:25-42. doi: 10.1007/978-1-62703-712-9_3.


Anxiety and depression predicted by medically unexplained symptoms in Pakistani children: a case-control study.

Imran N, Ani C, Mahmood Z, Hassan KA, Bhatti MR.

J Psychosom Res. 2014 Feb;76(2):105-12. doi: 10.1016/j.jpsychores.2013.11.016. Epub 2013 Dec 7.


Lung cancer stem cell: fancy conceptual model of tumor biology or cornerstone of a forthcoming therapeutic breakthrough?

Sourisseau T, Hassan KA, Wistuba I, Penault-Llorca F, Adam J, Deutsch E, Soria JC.

J Thorac Oncol. 2014 Jan;9(1):7-17. doi: 10.1097/JTO.0000000000000028. Review.


Rotavirus genotypes associated with acute diarrhea in Egyptian infants.

Ahmed SF, Mansour AM, Klena JD, Husain TS, Hassan KA, Mohamed F, Steele D.

Pediatr Infect Dis J. 2014 Jan;33 Suppl 1:S62-8. doi: 10.1097/INF.0000000000000052.


Transcriptomic and biochemical analyses identify a family of chlorhexidine efflux proteins.

Hassan KA, Jackson SM, Penesyan A, Patching SG, Tetu SG, Eijkelkamp BA, Brown MH, Henderson PJ, Paulsen IT.

Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):20254-9. doi: 10.1073/pnas.1317052110. Epub 2013 Nov 25.


Sequences of two related multiple antibiotic resistance virulence plasmids sharing a unique IS26-related molecular signature isolated from different Escherichia coli pathotypes from different hosts.

Venturini C, Hassan KA, Roy Chowdhury P, Paulsen IT, Walker MJ, Djordjevic SP.

PLoS One. 2013 Nov 4;8(11):e78862. doi: 10.1371/journal.pone.0078862. eCollection 2013.


Reduced colonic microbial diversity is associated with colitis in NHE3-deficient mice.

Larmonier CB, Laubitz D, Hill FM, Shehab KW, Lipinski L, Midura-Kiela MT, McFadden RM, Ramalingam R, Hassan KA, Golebiewski M, Besselsen DG, Ghishan FK, Kiela PR.

Am J Physiol Gastrointest Liver Physiol. 2013 Nov 15;305(10):G667-77. doi: 10.1152/ajpgi.00189.2013. Epub 2013 Sep 12.


Impact of DNA damaging agents on genome-wide transcriptional profiles in two marine Synechococcus species.

Tetu SG, Johnson DA, Varkey D, Phillippy K, Stuart RK, Dupont CL, Hassan KA, Palenik B, Paulsen IT.

Front Microbiol. 2013 Aug 16;4:232. doi: 10.3389/fmicb.2013.00232. eCollection 2013.


pA506, a conjugative plasmid of the plant epiphyte Pseudomonas fluorescens A506.

Stockwell VO, Davis EW 2nd, Carey A, Shaffer BT, Mavrodi DV, Hassan KA, Hockett K, Thomashow LS, Paulsen IT, Loper JE.

Appl Environ Microbiol. 2013 Sep;79(17):5272-82. doi: 10.1128/AEM.01354-13. Epub 2013 Jun 28.


H-NS plays a role in expression of Acinetobacter baumannii virulence features.

Eijkelkamp BA, Stroeher UH, Hassan KA, Elbourne LD, Paulsen IT, Brown MH.

Infect Immun. 2013 Jul;81(7):2574-83. doi: 10.1128/IAI.00065-13. Epub 2013 May 6.


Prevalence and associated risk factors of male erectile dysfunction among patients on hemodialysis and kidney transplant recipients: a cross-sectional survey from Sudan.

Mekki MO, El Hassan KA, El Mahdi EM, Haroun HH, Mohammed MA, Khamis KH, Ismail MO, Yousif ME, El Sanousi H.

Saudi J Kidney Dis Transpl. 2013 May;24(3):500-6.


The complete genome and phenome of a community-acquired Acinetobacter baumannii.

Farrugia DN, Elbourne LD, Hassan KA, Eijkelkamp BA, Tetu SG, Brown MH, Shah BS, Peleg AY, Mabbutt BC, Paulsen IT.

PLoS One. 2013;8(3):e58628. doi: 10.1371/journal.pone.0058628. Epub 2013 Mar 19.


Genome Sequence of the Group III Clostridium botulinum Strain Eklund-C.

Hassan KA, Tetu SG, Elbourne LD, Johnson EA, Paulsen IT.

Genome Announc. 2013 Mar 14;1(2):e0004413. doi: 10.1128/genomeA.00044-13.


Notch pathway activity identifies cells with cancer stem cell-like properties and correlates with worse survival in lung adenocarcinoma.

Hassan KA, Wang L, Korkaya H, Chen G, Maillard I, Beer DG, Kalemkerian GP, Wicha MS.

Clin Cancer Res. 2013 Apr 15;19(8):1972-80. doi: 10.1158/1078-0432.CCR-12-0370. Epub 2013 Feb 26.


Effect of tannic acid on the transcriptome of the soil bacterium Pseudomonas protegens Pf-5.

Lim CK, Penesyan A, Hassan KA, Loper JE, Paulsen IT.

Appl Environ Microbiol. 2013 May;79(9):3141-5. doi: 10.1128/AEM.03101-12. Epub 2013 Feb 22.


Single-step selection of drug resistant Acinetobacter baylyi ADP1 mutants reveals a functional redundancy in the recruitment of multidrug efflux systems.

Brzoska AJ, Hassan KA, de Leon EJ, Paulsen IT, Lewis PJ.

PLoS One. 2013;8(2):e56090. doi: 10.1371/journal.pone.0056090. Epub 2013 Feb 7.


Risk factors of stroke patients admitted to a general hospital in Kuwait.

Ashkanani A, Hassan KA, Lamdhade S.

Int J Neurosci. 2013 Feb;123(2):89-92. doi: 10.3109/00207454.2012.732633. Epub 2012 Oct 26.


The effect of zinc limitation on the transcriptome of Pseudomonas protegens Pf-5.

Lim CK, Hassan KA, Penesyan A, Loper JE, Paulsen IT.

Environ Microbiol. 2013 Mar;15(3):702-15. doi: 10.1111/j.1462-2920.2012.02849.x. Epub 2012 Aug 19.


Activation of an IL6 inflammatory loop mediates trastuzumab resistance in HER2+ breast cancer by expanding the cancer stem cell population.

Korkaya H, Kim GI, Davis A, Malik F, Henry NL, Ithimakin S, Quraishi AA, Tawakkol N, D'Angelo R, Paulson AK, Chung S, Luther T, Paholak HJ, Liu S, Hassan KA, Zen Q, Clouthier SG, Wicha MS.

Mol Cell. 2012 Aug 24;47(4):570-84. doi: 10.1016/j.molcel.2012.06.014. Epub 2012 Jul 19.

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