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Items: 10

1.

SLiMScape: a protein short linear motif analysis plugin for Cytoscape.

O'Brien KT, Haslam NJ, Shields DC.

BMC Bioinformatics. 2013 Jul 15;14:224. doi: 10.1186/1471-2105-14-224.

2.

PeptideLocator: prediction of bioactive peptides in protein sequences.

Mooney C, Haslam NJ, Holton TA, Pollastri G, Shields DC.

Bioinformatics. 2013 May 1;29(9):1120-6. doi: 10.1093/bioinformatics/btt103. Epub 2013 Mar 16.

PMID:
23505299
3.

Towards the improved discovery and design of functional peptides: common features of diverse classes permit generalized prediction of bioactivity.

Mooney C, Haslam NJ, Pollastri G, Shields DC.

PLoS One. 2012;7(10):e45012. doi: 10.1371/journal.pone.0045012. Epub 2012 Oct 8.

4.

Peptide-binding domains: are limp handshakes safest?

Haslam NJ, Shields DC.

Sci Signal. 2012 Sep 25;5(243):pe40.

PMID:
23012652
5.

Profile-based short linear protein motif discovery.

Haslam NJ, Shields DC.

BMC Bioinformatics. 2012 May 18;13:104. doi: 10.1186/1471-2105-13-104.

6.

Prediction of short linear protein binding regions.

Mooney C, Pollastri G, Shields DC, Haslam NJ.

J Mol Biol. 2012 Jan 6;415(1):193-204. doi: 10.1016/j.jmb.2011.10.025. Epub 2011 Oct 21.

PMID:
22079048
7.

SLiMSearch 2.0: biological context for short linear motifs in proteins.

Davey NE, Haslam NJ, Shields DC, Edwards RJ.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W56-60. doi: 10.1093/nar/gkr402. Epub 2011 May 26.

8.

SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs.

Davey NE, Haslam NJ, Shields DC, Edwards RJ.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W534-9. doi: 10.1093/nar/gkq440. Epub 2010 May 23.

9.

EpiC: an open resource for exploring epitopes to aid antibody-based experiments.

Haslam NJ, Gibson TJ.

J Proteome Res. 2010 Jul 2;9(7):3759-63. doi: 10.1021/pr100029f.

PMID:
20496950
10.

Optimal probe length varies for targets with high sequence variation: implications for probe library design for resequencing highly variable genes.

Haslam NJ, Whiteford NE, Weber G, PrĂ¼gel-Bennett A, Essex JW, Neylon C.

PLoS One. 2008 Jun 18;3(6):e2500. doi: 10.1371/journal.pone.0002500.

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