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Items: 23

1.

Author Correction: The mid-developmental transition and the evolution of animal body plans.

Levin M, Anavy L, Cole AG, Winter E, Mostov N, Khair S, Senderovich N, Kovalev E, Silver DH, Feder M, Fernandez-Valverde SL, Nakanishi N, Simmons D, Simakov O, Larsson T, Liu SY, Jerafi-Vider A, Yaniv K, Ryan JF, Martindale MQ, Rink JC, Arendt D, Degnan SM, Degnan BM, Hashimshony T, Yanai I.

Nature. 2019 Nov;575(7782):E3. doi: 10.1038/s41586-019-1698-x.

PMID:
31673121
2.

CEL-Seq2-Single-Cell RNA Sequencing by Multiplexed Linear Amplification.

Yanai I, Hashimshony T.

Methods Mol Biol. 2019;1979:45-56. doi: 10.1007/978-1-4939-9240-9_4.

PMID:
31028631
3.

Spatiotemporal Gene Expression Analysis of the Caenorhabditis elegans Germline Uncovers a Syncytial Expression Switch.

Tzur YB, Winter E, Gao J, Hashimshony T, Yanai I, Colaiácovo MP.

Genetics. 2018 Oct;210(2):587-605. doi: 10.1534/genetics.118.301315. Epub 2018 Aug 9.

4.

The gene regulatory program of Acrobeloides nanus reveals conservation of phylum-specific expression.

Schiffer PH, Polsky AL, Cole AG, Camps JIR, Kroiher M, Silver DH, Grishkevich V, Anavy L, Koutsovoulos G, Hashimshony T, Yanai I.

Proc Natl Acad Sci U S A. 2018 Apr 24;115(17):4459-4464. doi: 10.1073/pnas.1720817115. Epub 2018 Apr 6.

5.

Cnidarians layer up.

Hashimshony T.

Nat Ecol Evol. 2017 Oct;1(10):1429-1430. doi: 10.1038/s41559-017-0323-3. No abstract available.

PMID:
29185522
6.

scDual-Seq: mapping the gene regulatory program of Salmonella infection by host and pathogen single-cell RNA-sequencing.

Avital G, Avraham R, Fan A, Hashimshony T, Hung DT, Yanai I.

Genome Biol. 2017 Oct 27;18(1):200. doi: 10.1186/s13059-017-1340-x.

7.

CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq.

Hashimshony T, Senderovich N, Avital G, Klochendler A, de Leeuw Y, Anavy L, Gennert D, Li S, Livak KJ, Rozenblatt-Rosen O, Dor Y, Regev A, Yanai I.

Genome Biol. 2016 Apr 28;17:77. doi: 10.1186/s13059-016-0938-8.

8.

The mid-developmental transition and the evolution of animal body plans.

Levin M, Anavy L, Cole AG, Winter E, Mostov N, Khair S, Senderovich N, Kovalev E, Silver DH, Feder M, Fernandez-Valverde SL, Nakanishi N, Simmons D, Simakov O, Larsson T, Liu SY, Jerafi-Vider A, Yaniv K, Ryan JF, Martindale MQ, Rink JC, Arendt D, Degnan SM, Degnan BM, Hashimshony T, Yanai I.

Nature. 2016 Mar 31;531(7596):637-641. doi: 10.1038/nature16994. Epub 2016 Feb 17. Erratum in: Nature. 2019 Nov;575(7782):E3.

9.

Lymphatic vessels arise from specialized angioblasts within a venous niche.

Nicenboim J, Malkinson G, Lupo T, Asaf L, Sela Y, Mayseless O, Gibbs-Bar L, Senderovich N, Hashimshony T, Shin M, Jerafi-Vider A, Avraham-Davidi I, Krupalnik V, Hofi R, Almog G, Astin JW, Golani O, Ben-Dor S, Crosier PS, Herzog W, Lawson ND, Hanna JH, Yanai I, Yaniv K.

Nature. 2015 Jun 4;522(7554):56-61.

PMID:
25992545
10.

Spatiotemporal transcriptomics reveals the evolutionary history of the endoderm germ layer.

Hashimshony T, Feder M, Levin M, Hall BK, Yanai I.

Nature. 2015 Mar 12;519(7542):219-22. doi: 10.1038/nature13996. Epub 2014 Dec 10.

11.

Seeing is believing: new methods for in situ single-cell transcriptomics.

Avital G, Hashimshony T, Yanai I.

Genome Biol. 2014 Mar 31;15(3):110. doi: 10.1186/gb4169. Review.

12.

The roles of the catalytic and noncatalytic activities of Rpd3L and Rpd3S in the regulation of gene transcription in yeast.

Yeheskely-Hayon D, Kotler A, Stark M, Hashimshony T, Sagee S, Kassir Y.

PLoS One. 2013 Dec 17;8(12):e85088. doi: 10.1371/journal.pone.0085088. eCollection 2013.

13.

CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification.

Hashimshony T, Wagner F, Sher N, Yanai I.

Cell Rep. 2012 Sep 27;2(3):666-73. doi: 10.1016/j.celrep.2012.08.003. Epub 2012 Aug 30.

14.

A genomic bias for genotype-environment interactions in C. elegans.

Grishkevich V, Ben-Elazar S, Hashimshony T, Schott DH, Hunter CP, Yanai I.

Mol Syst Biol. 2012 Jun 5;8:587. doi: 10.1038/msb.2012.19.

15.

Developmental milestones punctuate gene expression in the Caenorhabditis embryo.

Levin M, Hashimshony T, Wagner F, Yanai I.

Dev Cell. 2012 May 15;22(5):1101-8. doi: 10.1016/j.devcel.2012.04.004. Epub 2012 May 3.

16.

Core promoter T-blocks correlate with gene expression levels in C. elegans.

Grishkevich V, Hashimshony T, Yanai I.

Genome Res. 2011 May;21(5):707-17. doi: 10.1101/gr.113381.110. Epub 2011 Mar 2.

17.

Revealing developmental networks by comparative transcriptomics.

Hashimshony T, Yanai I.

Transcription. 2010 Nov;1(3):154-158. Epub 2010 Jul 27.

18.

Regulation of immunoglobulin light-chain recombination by the transcription factor IRF-4 and the attenuation of interleukin-7 signaling.

Johnson K, Hashimshony T, Sawai CM, Pongubala JM, Skok JA, Aifantis I, Singh H.

Immunity. 2008 Mar;28(3):335-45. doi: 10.1016/j.immuni.2007.12.019. Epub 2008 Feb 14.

19.

Gene repression paradigms in animal cells.

Lande-Diner L, Zhang J, Hashimshony T, Goren A, Keshet I, Cedar H.

Cold Spring Harb Symp Quant Biol. 2004;69:131-8. Review. No abstract available.

PMID:
16117642
20.

The role of DNA methylation in setting up chromatin structure during development.

Hashimshony T, Zhang J, Keshet I, Bustin M, Cedar H.

Nat Genet. 2003 Jun;34(2):187-92.

PMID:
12740577
21.

Establishment of transcriptional competence in early and late S phase.

Zhang J, Xu F, Hashimshony T, Keshet I, Cedar H.

Nature. 2002 Nov 14;420(6912):198-202.

PMID:
12432398
22.

An upstream repressor element plays a role in Igf2 imprinting.

Eden S, Constancia M, Hashimshony T, Dean W, Goldstein B, Johnson AC, Keshet I, Reik W, Cedar H.

EMBO J. 2001 Jul 2;20(13):3518-25.

23.

DNA methylation models histone acetylation.

Eden S, Hashimshony T, Keshet I, Cedar H, Thorne AW.

Nature. 1998 Aug 27;394(6696):842. No abstract available.

PMID:
9732866

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