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Items: 1 to 50 of 75

1.

DNA methylation in Marchantia polymorpha.

Aguilar-Cruz A, Grimanelli D, Haseloff J, Arteaga-Vázquez MA.

New Phytol. 2019 Mar 28. doi: 10.1111/nph.15818. [Epub ahead of print] Review.

PMID:
30920664
2.

Loop assembly: a simple and open system for recursive fabrication of DNA circuits.

Pollak B, Cerda A, Delmans M, Álamos S, Moyano T, West A, Gutiérrez RA, Patron NJ, Federici F, Haseloff J.

New Phytol. 2019 Apr;222(1):628-640. doi: 10.1111/nph.15625. Epub 2019 Feb 25.

PMID:
30521109
3.

Opening options for material transfer.

Kahl L, Molloy J, Patron N, Matthewman C, Haseloff J, Grewal D, Johnson R, Endy D.

Nat Biotechnol. 2018 Oct 11;36(10):923-927. doi: 10.1038/nbt.4263. No abstract available.

PMID:
30307930
4.

Intercellular adhesion promotes clonal mixing in growing bacterial populations.

Kan A, Del Valle I, Rudge T, Federici F, Haseloff J.

J R Soc Interface. 2018 Sep 19;15(146). pii: 20180406. doi: 10.1098/rsif.2018.0406.

5.

Droplet-based microfluidic analysis and screening of single plant cells.

Yu Z, Boehm CR, Hibberd JM, Abell C, Haseloff J, Burgess SJ, Reyna-Llorens I.

PLoS One. 2018 May 3;13(5):e0196810. doi: 10.1371/journal.pone.0196810. eCollection 2018.

6.

Programmed hierarchical patterning of bacterial populations.

Boehm CR, Grant PK, Haseloff J.

Nat Commun. 2018 Feb 22;9(1):776. doi: 10.1038/s41467-018-03069-3.

7.

A transatlantic perspective on 20 emerging issues in biological engineering.

Wintle BC, Boehm CR, Rhodes C, Molloy JC, Millett P, Adam L, Breitling R, Carlson R, Casagrande R, Dando M, Doubleday R, Drexler E, Edwards B, Ellis T, Evans NG, Hammond R, Haseloff J, Kahl L, Kuiken T, Lichman BR, Matthewman CA, Napier JA, ÓhÉigeartaigh SS, Patron NJ, Perello E, Shapira P, Tait J, Takano E, Sutherland WJ.

Elife. 2017 Nov 14;6. pii: e30247. doi: 10.7554/eLife.30247.

8.

Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.

Bowman JL, Kohchi T, Yamato KT, Jenkins J, Shu S, Ishizaki K, Yamaoka S, Nishihama R, Nakamura Y, Berger F, Adam C, Aki SS, Althoff F, Araki T, Arteaga-Vazquez MA, Balasubrmanian S, Barry K, Bauer D, Boehm CR, Briginshaw L, Caballero-Perez J, Catarino B, Chen F, Chiyoda S, Chovatia M, Davies KM, Delmans M, Demura T, Dierschke T, Dolan L, Dorantes-Acosta AE, Eklund DM, Florent SN, Flores-Sandoval E, Fujiyama A, Fukuzawa H, Galik B, Grimanelli D, Grimwood J, Grossniklaus U, Hamada T, Haseloff J, Hetherington AJ, Higo A, Hirakawa Y, Hundley HN, Ikeda Y, Inoue K, Inoue SI, Ishida S, Jia Q, Kakita M, Kanazawa T, Kawai Y, Kawashima T, Kennedy M, Kinose K, Kinoshita T, Kohara Y, Koide E, Komatsu K, Kopischke S, Kubo M, Kyozuka J, Lagercrantz U, Lin SS, Lindquist E, Lipzen AM, Lu CW, De Luna E, Martienssen RA, Minamino N, Mizutani M, Mizutani M, Mochizuki N, Monte I, Mosher R, Nagasaki H, Nakagami H, Naramoto S, Nishitani K, Ohtani M, Okamoto T, Okumura M, Phillips J, Pollak B, Reinders A, Rövekamp M, Sano R, Sawa S, Schmid MW, Shirakawa M, Solano R, Spunde A, Suetsugu N, Sugano S, Sugiyama A, Sun R, Suzuki Y, Takenaka M, Takezawa D, Tomogane H, Tsuzuki M, Ueda T, Umeda M, Ward JM, Watanabe Y, Yazaki K, Yokoyama R, Yoshitake Y, Yotsui I, Zachgo S, Schmutz J.

Cell. 2017 Oct 5;171(2):287-304.e15. doi: 10.1016/j.cell.2017.09.030.

9.

Synthetic Botany.

Boehm CR, Pollak B, Purswani N, Patron N, Haseloff J.

Cold Spring Harb Perspect Biol. 2017 Jul 5;9(7). pii: a023887. doi: 10.1101/cshperspect.a023887. Review.

PMID:
28246181
10.

MarpoDB: An Open Registry for Marchantia Polymorpha Genetic Parts.

Delmans M, Pollak B, Haseloff J.

Plant Cell Physiol. 2017 Jan 1;58(1):e5. doi: 10.1093/pcp/pcw201.

11.

Artificial Symmetry-Breaking for Morphogenetic Engineering Bacterial Colonies.

Nuñez IN, Matute TF, Del Valle ID, Kan A, Choksi A, Endy D, Haseloff J, Rudge TJ, Federici F.

ACS Synth Biol. 2017 Feb 17;6(2):256-265. doi: 10.1021/acssynbio.6b00149. Epub 2016 Nov 28.

PMID:
27794593
12.

Orthogonal intercellular signaling for programmed spatial behavior.

Grant PK, Dalchau N, Brown JR, Federici F, Rudge TJ, Yordanov B, Patange O, Phillips A, Haseloff J.

Mol Syst Biol. 2016 Jan 25;12(1):849. doi: 10.15252/msb.20156590.

13.

The Naming of Names: Guidelines for Gene Nomenclature in Marchantia.

Bowman JL, Araki T, Arteaga-Vazquez MA, Berger F, Dolan L, Haseloff J, Ishizaki K, Kyozuka J, Lin SS, Nagasaki H, Nakagami H, Nakajima K, Nakamura Y, Ohashi-Ito K, Sawa S, Shimamura M, Solano R, Tsukaya H, Ueda T, Watanabe Y, Yamato KT, Zachgo S, Kohchi T.

Plant Cell Physiol. 2016 Feb;57(2):257-61. doi: 10.1093/pcp/pcv193. Epub 2015 Dec 7. Review.

14.

A Cyan Fluorescent Reporter Expressed from the Chloroplast Genome of Marchantia polymorpha.

Boehm CR, Ueda M, Nishimura Y, Shikanai T, Haseloff J.

Plant Cell Physiol. 2016 Feb;57(2):291-9. doi: 10.1093/pcp/pcv160. Epub 2015 Dec 3.

15.

Characterization of Intrinsic Properties of Promoters.

Rudge TJ, Brown JR, Federici F, Dalchau N, Phillips A, Ajioka JW, Haseloff J.

ACS Synth Biol. 2016 Jan 15;5(1):89-98. doi: 10.1021/acssynbio.5b00116. Epub 2016 Jan 7.

16.

Standards for plant synthetic biology: a common syntax for exchange of DNA parts.

Patron NJ, Orzaez D, Marillonnet S, Warzecha H, Matthewman C, Youles M, Raitskin O, Leveau A, Farré G, Rogers C, Smith A, Hibberd J, Webb AA, Locke J, Schornack S, Ajioka J, Baulcombe DC, Zipfel C, Kamoun S, Jones JD, Kuhn H, Robatzek S, Van Esse HP, Sanders D, Oldroyd G, Martin C, Field R, O'Connor S, Fox S, Wulff B, Miller B, Breakspear A, Radhakrishnan G, Delaux PM, Loqué D, Granell A, Tissier A, Shih P, Brutnell TP, Quick WP, Rischer H, Fraser PD, Aharoni A, Raines C, South PF, Ané JM, Hamberger BR, Langdale J, Stougaard J, Bouwmeester H, Udvardi M, Murray JA, Ntoukakis V, Schäfer P, Denby K, Edwards KJ, Osbourn A, Haseloff J.

New Phytol. 2015 Oct;208(1):13-9. doi: 10.1111/nph.13532. Epub 2015 Jul 14. Erratum in: New Phytol. 2016 Jan;209(2):885.

17.

A computational method for automated characterization of genetic components.

Yordanov B, Dalchau N, Grant PK, Pedersen M, Emmott S, Haseloff J, Phillips A.

ACS Synth Biol. 2014 Aug 15;3(8):578-88. doi: 10.1021/sb400152n. Epub 2014 Mar 14.

PMID:
24628037
18.

Synthetic Biology: opportunities for Chilean bioindustry and education.

Federici F, Rudge TJ, Pollak B, Haseloff J, Gutiérrez RA.

Biol Res. 2013;46(4):383-93. doi: 10.4067/S0716-97602013000400010. Review.

19.

Cell polarity-driven instability generates self-organized, fractal patterning of cell layers.

Rudge TJ, Federici F, Steiner PJ, Kan A, Haseloff J.

ACS Synth Biol. 2013 Dec 20;2(12):705-14. doi: 10.1021/sb400030p. Epub 2013 Jun 3.

PMID:
23688051
20.

Computational modeling of synthetic microbial biofilms.

Rudge TJ, Steiner PJ, Phillips A, Haseloff J.

ACS Synth Biol. 2012 Aug 17;1(8):345-52. doi: 10.1021/sb300031n. Epub 2012 Aug 10.

PMID:
23651288
21.

Ectopic divisions in vascular and ground tissues of Arabidopsis thaliana result in distinct leaf venation defects.

Wenzel CL, Marrison J, Mattsson J, Haseloff J, Bougourd SM.

J Exp Bot. 2012 Sep;63(14):5351-64. doi: 10.1093/jxb/ers196.

22.

Integrated genetic and computation methods for in planta cytometry.

Federici F, Dupuy L, Laplaze L, Heisler M, Haseloff J.

Nat Methods. 2012 Apr 1;9(5):483-5. doi: 10.1038/nmeth.1940.

PMID:
22466793
23.

A molecular framework for the inhibition of Arabidopsis root growth in response to boron toxicity.

Aquea F, Federici F, Moscoso C, Vega A, Jullian P, Haseloff J, Arce-Johnson P.

Plant Cell Environ. 2012 Apr;35(4):719-34. doi: 10.1111/j.1365-3040.2011.02446.x. Epub 2011 Nov 8.

24.

High-resolution live imaging of plant growth in near physiological bright conditions using light sheet fluorescence microscopy.

Maizel A, von Wangenheim D, Federici F, Haseloff J, Stelzer EH.

Plant J. 2011 Oct;68(2):377-85. doi: 10.1111/j.1365-313X.2011.04692.x. Epub 2011 Aug 4.

25.

Coordination of plant cell division and expansion in a simple morphogenetic system.

Dupuy L, Mackenzie J, Haseloff J.

Proc Natl Acad Sci U S A. 2010 Feb 9;107(6):2711-6. doi: 10.1073/pnas.0906322107. Epub 2010 Jan 25.

26.

Shoot Na+ exclusion and increased salinity tolerance engineered by cell type-specific alteration of Na+ transport in Arabidopsis.

Møller IS, Gilliham M, Jha D, Mayo GM, Roy SJ, Coates JC, Haseloff J, Tester M.

Plant Cell. 2009 Jul;21(7):2163-78. doi: 10.1105/tpc.108.064568. Epub 2009 Jul 7.

27.

Gibberellin signaling in the endodermis controls Arabidopsis root meristem size.

Ubeda-Tomás S, Federici F, Casimiro I, Beemster GT, Bhalerao R, Swarup R, Doerner P, Haseloff J, Bennett MJ.

Curr Biol. 2009 Jul 28;19(14):1194-9. doi: 10.1016/j.cub.2009.06.023. Epub 2009 Jul 2.

28.

Synthetic biology: history, challenges and prospects.

Haseloff J, Ajioka J.

J R Soc Interface. 2009 Aug 6;6 Suppl 4:S389-91. doi: 10.1098/rsif.2009.0176.focus. Epub 2009 Jun 3. No abstract available.

29.

The NAC domain transcription factors FEZ and SOMBRERO control the orientation of cell division plane in Arabidopsis root stem cells.

Willemsen V, Bauch M, Bennett T, Campilho A, Wolkenfelt H, Xu J, Haseloff J, Scheres B.

Dev Cell. 2008 Dec;15(6):913-22. doi: 10.1016/j.devcel.2008.09.019.

30.

GAL4 GFP enhancer trap lines for analysis of stomatal guard cell development and gene expression.

Gardner MJ, Baker AJ, Assie JM, Poethig RS, Haseloff JP, Webb AA.

J Exp Bot. 2009;60(1):213-26. doi: 10.1093/jxb/ern292. Epub 2008 Nov 25.

31.

A simple way to identify non-viable cells within living plant tissue using confocal microscopy.

Truernit E, Haseloff J.

Plant Methods. 2008 Jun 23;4:15. doi: 10.1186/1746-4811-4-15.

32.
33.

Diarch symmetry of the vascular bundle in Arabidopsis root encompasses the pericycle and is reflected in distich lateral root initiation.

Parizot B, Laplaze L, Ricaud L, Boucheron-Dubuisson E, Bayle V, Bonke M, De Smet I, Poethig SR, Helariutta Y, Haseloff J, Chriqui D, Beeckman T, Nussaume L.

Plant Physiol. 2008 Jan;146(1):140-8. Epub 2007 Nov 9.

34.

A system for modelling cell-cell interactions during plant morphogenesis.

Dupuy L, Mackenzie J, Rudge T, Haseloff J.

Ann Bot. 2008 May;101(8):1255-65. Epub 2007 Oct 7.

35.

Time of day modulates low-temperature Ca signals in Arabidopsis.

Dodd AN, Jakobsen MK, Baker AJ, Telzerow A, Hou SW, Laplaze L, Barrot L, Poethig RS, Haseloff J, Webb AA.

Plant J. 2006 Dec;48(6):962-73.

36.

A Role for KNAT Class II Genes in Root Development.

Truernit E, Haseloff J.

Plant Signal Behav. 2007 Jan;2(1):10-2.

37.

A map of KNAT gene expression in the Arabidopsis root.

Truernit E, Siemering KR, Hodge S, Grbic V, Haseloff J.

Plant Mol Biol. 2006 Jan;60(1):1-20.

PMID:
16463096
38.

Armadillo-related proteins promote lateral root development in Arabidopsis.

Coates JC, Laplaze L, Haseloff J.

Proc Natl Acad Sci U S A. 2006 Jan 31;103(5):1621-6. Epub 2006 Jan 24.

39.

The uses of green fluorescent protein in plants.

Haseloff J, Siemering KR.

Methods Biochem Anal. 2006;47:259-84. Review. No abstract available.

PMID:
16335717
40.

Root gravitropism requires lateral root cap and epidermal cells for transport and response to a mobile auxin signal.

Swarup R, Kramer EM, Perry P, Knox K, Leyser HM, Haseloff J, Beemster GT, Bhalerao R, Bennett MJ.

Nat Cell Biol. 2005 Nov;7(11):1057-65.

PMID:
16244669
41.

GAL4-GFP enhancer trap lines for genetic manipulation of lateral root development in Arabidopsis thaliana.

Laplaze L, Parizot B, Baker A, Ricaud L, Martinière A, Auguy F, Franche C, Nussaume L, Bogusz D, Haseloff J.

J Exp Bot. 2005 Sep;56(419):2433-42. Epub 2005 Jul 25.

PMID:
16043452
42.

Polycomb group genes control developmental timing of endosperm.

Ingouff M, Haseloff J, Berger F.

Plant J. 2005 Jun;42(5):663-74.

43.

Marking cell lineages in living tissues.

Kurup S, Runions J, Köhler U, Laplaze L, Hodge S, Haseloff J.

Plant J. 2005 May;42(3):444-53.

44.

Spatial control of transgene expression in rice (Oryza sativa L.) using the GAL4 enhancer trapping system.

Johnson AA, Hibberd JM, Gay C, Essah PA, Haseloff J, Tester M, Guiderdoni E.

Plant J. 2005 Mar;41(5):779-89.

45.

cg12 expression is specifically linked to infection of root hairs and cortical cells during Casuarina glauca and Allocasuarina verticillata actinorhizal nodule development.

Svistoonoff S, Laplaze L, Auguy F, Runions J, Duponnois R, Haseloff J, Franche C, Bogusz D.

Mol Plant Microbe Interact. 2003 Jul;16(7):600-7.

46.

Old botanical techniques for new microscopes.

Haseloff J.

Biotechniques. 2003 Jun;34(6):1174-8, 1180, 1182. No abstract available.

47.

Optimization of trans-splicing ribozyme efficiency and specificity by in vivo genetic selection.

Ayre BG, Köhler U, Turgeon R, Haseloff J.

Nucleic Acids Res. 2002 Dec 15;30(24):e141.

48.

Dynamic analyses of the expression of the HISTONE::YFP fusion protein in arabidopsis show that syncytial endosperm is divided in mitotic domains.

Boisnard-Lorig C, Colon-Carmona A, Bauch M, Hodge S, Doerner P, Bancharel E, Dumas C, Haseloff J, Berger F.

Plant Cell. 2001 Mar;13(3):495-509.

49.

Promiscuous and specific phospholipid binding by domains in ZAC, a membrane-associated Arabidopsis protein with an ARF GAP zinc finger and a C2 domain.

Jensen RB, Lykke-Andersen K, Frandsen GI, Nielsen HB, Haseloff J, Jespersen HM, Mundy J, Skriver K.

Plant Mol Biol. 2000 Dec;44(6):799-814.

PMID:
11202441

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