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Items: 1 to 50 of 77

1.

Comparison of Infant Gut and Skin Microbiota, Resistome and Virulome Between Neonatal Intensive Care Unit (NICU) Environments.

Hourigan SK, Subramanian P, Hasan NA, Ta A, Klein E, Chettout N, Huddleston K, Deopujari V, Levy S, Baveja R, Clemency NC, Baker RL, Niederhuber JE, Colwell RR.

Front Microbiol. 2018 Jun 25;9:1361. doi: 10.3389/fmicb.2018.01361. eCollection 2018.

2.

Distinct consequences of amoxicillin and ertapenem exposure in the porcine gut microbiome.

Connelly S, Subramanian P, Hasan NA, Colwell RR, Kaleko M.

Anaerobe. 2018 Apr 22. pii: S1075-9964(18)30069-6. doi: 10.1016/j.anaerobe.2018.04.012. [Epub ahead of print]

PMID:
29689301
3.

Biofilms Comprise a Component of the Annual Cycle of Vibrio cholerae in the Bay of Bengal Estuary.

Sultana M, Nusrin S, Hasan NA, Sadique A, Ahmed KU, Islam A, Hossain A, Longini I, Nizam A, Huq A, Siddique AK, Sack DA, Sack RB, Colwell RR, Alam M.

MBio. 2018 Apr 17;9(2). pii: e00483-18. doi: 10.1128/mBio.00483-18.

4.

Microbial diversity changes with rhizosphere and hydrocarbons in contrasting soils.

Khan MAI, Biswas B, Smith E, Mahmud SA, Hasan NA, Khan MAW, Naidu R, Megharaj M.

Ecotoxicol Environ Saf. 2018 Jul 30;156:434-442. doi: 10.1016/j.ecoenv.2018.03.006.

PMID:
29604472
5.

Characterization of Pathogenic Vibrio parahaemolyticus from the Chesapeake Bay, Maryland.

Chen AJ, Hasan NA, Haley BJ, Taviani E, Tarnowski M, Brohawn K, Johnson CN, Colwell RR, Huq A.

Front Microbiol. 2017 Dec 15;8:2460. doi: 10.3389/fmicb.2017.02460. eCollection 2017.

6.

Characterization of Two Cryptic Plasmids Isolated in Haiti from Clinical Vibrio cholerae Non-O1/Non-O139.

Ceccarelli D, Garriss G, Choi SY, Hasan NA, Stepanauskas R, Pop M, Huq A, Colwell RR.

Front Microbiol. 2017 Nov 23;8:2283. doi: 10.3389/fmicb.2017.02283. eCollection 2017.

7.

The microbiomes of blowflies and houseflies as bacterial transmission reservoirs.

Junqueira ACM, Ratan A, Acerbi E, Drautz-Moses DI, Premkrishnan BNV, Costea PI, Linz B, Purbojati RW, Paulo DF, Gaultier NE, Subramanian P, Hasan NA, Colwell RR, Bork P, Azeredo-Espin AML, Bryant DA, Schuster SC.

Sci Rep. 2017 Nov 24;7(1):16324. doi: 10.1038/s41598-017-16353-x.

8.

Comprehensive benchmarking and ensemble approaches for metagenomic classifiers.

McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S, Tighe S, Hasan NA, Subramanian P, Moffat K, Levy S, Lonardi S, Greenfield N, Colwell RR, Rosen GL, Mason CE.

Genome Biol. 2017 Sep 21;18(1):182. doi: 10.1186/s13059-017-1299-7.

9.

Complete Genome Sequence of Mycobacterium chimaera SJ42, a Nonoutbreak Strain from an Immunocompromised Patient with Pulmonary Disease.

Hasan NA, Warren RL, Epperson LE, Malecha A, Alexander DC, Turenne CY, MacMillan D, Birol I, Pleasance S, Coope R, Jones SJM, Romney MG, Ng M, Chan T, Rodrigues M, Tang P, Gardy JL, Strong M.

Genome Announc. 2017 Sep 14;5(37). pii: e00963-17. doi: 10.1128/genomeA.00963-17.

10.

Mycobacterium talmoniae sp. nov., a slowly growing mycobacterium isolated from human respiratory samples.

Davidson RM, DeGroote MA, Marola JL, Buss S, Jones V, McNeil MR, Freifeld AG, Elaine Epperson L, Hasan NA, Jackson M, Iwen PC, Salfinger M, Strong M.

Int J Syst Evol Microbiol. 2017 Aug;67(8):2640-2645. doi: 10.1099/ijsem.0.001998. Epub 2017 Aug 15.

PMID:
28809146
11.

Complete Genome Sequence of Mycobacteriumchimaera Strain CDC2015-22-71.

Hasan NA, Lawsin A, Perry KA, Alyanak E, Toney NC, Malecha A, Rowe LA, Batra D, Moulton-Meissner H, Miller JR, Strong M, Laufer Halpin A.

Genome Announc. 2017 Aug 3;5(31). pii: e00693-17. doi: 10.1128/genomeA.00693-17.

12.

Comparative genomic analysis and characterization of incompatibility group FIB plasmid encoded virulence factors of Salmonella enterica isolated from food sources.

Khajanchi BK, Hasan NA, Choi SY, Han J, Zhao S, Colwell RR, Cerniglia CE, Foley SL.

BMC Genomics. 2017 Aug 2;18(1):570. doi: 10.1186/s12864-017-3954-5.

13.

Genotypic and phenotypic characterization of multidrug resistant Salmonella Typhimurium and Salmonella Kentucky strains recovered from chicken carcasses.

Tasmin R, Hasan NA, Grim CJ, Grant A, Choi SY, Alam MS, Bell R, Cavanaugh C, Balan KV, Babu US, Parveen S.

PLoS One. 2017 May 8;12(5):e0176938. doi: 10.1371/journal.pone.0176938. eCollection 2017.

14.

Complete Genome Sequence of Mycobacterium avium subsp. hominissuis Strain H87 Isolated from an Indoor Water Sample.

Zhao X, Epperson LE, Hasan NA, Honda JR, Chan ED, Strong M, Walter ND, Davidson RM.

Genome Announc. 2017 Apr 20;5(16). pii: e00189-17. doi: 10.1128/genomeA.00189-17.

15.

Vibrio cholerae O1 with Reduced Susceptibility to Ciprofloxacin and Azithromycin Isolated from a Rural Coastal Area of Bangladesh.

Rashed SM, Hasan NA, Alam M, Sadique A, Sultana M, Hoq MM, Sack RB, Colwell RR, Huq A.

Front Microbiol. 2017 Feb 21;8:252. doi: 10.3389/fmicb.2017.00252. eCollection 2017.

16.

SYN-004 (ribaxamase), an oral beta-lactamase, mitigates antibiotic-mediated dysbiosis in a porcine gut microbiome model.

Connelly S, Bristol JA, Hubert S, Subramanian P, Hasan NA, Colwell RR, Kaleko M.

J Appl Microbiol. 2017 Feb 28. doi: 10.1111/jam.13432. [Epub ahead of print]

PMID:
28245091
17.

Correction: Environmental Nontuberculous Mycobacteria in the Hawaiian Islands.

Honda JR, Hasan NA, Davidson RM, Williams MD, Epperson LE, Reynolds PR, Smith T, Iakhiaeva E, Bankowski MJ, Wallace RJ Jr, Chan ED, Falkinham JO 3rd, Strong M.

PLoS Negl Trop Dis. 2016 Dec 2;10(12):e0005200. doi: 10.1371/journal.pntd.0005200. eCollection 2016 Dec.

18.

Complete Genome Sequence of Mycobacterium chimaera Strain AH16.

Hasan NA, Honda JR, Davidson RM, Epperson LE, Bankowski MJ, Chan ED, Strong M.

Genome Announc. 2016 Nov 23;4(6). pii: e01276-16. doi: 10.1128/genomeA.01276-16.

19.

Environmental Nontuberculous Mycobacteria in the Hawaiian Islands.

Honda JR, Hasan NA, Davidson RM, Williams MD, Epperson LE, Reynolds PR, Smith T, Iakhiaeva E, Bankowski MJ, Wallace RJ Jr, Chan ED, Falkinham JO 3rd, Strong M.

PLoS Negl Trop Dis. 2016 Oct 25;10(10):e0005068. doi: 10.1371/journal.pntd.0005068. eCollection 2016 Oct. Erratum in: PLoS Negl Trop Dis. 2016 Dec 2;10 (12 ):e0005200.

20.

Notes from the Field: Mycobacterium chimaera Contamination of Heater-Cooler Devices Used in Cardiac Surgery - United States.

Perkins KM, Lawsin A, Hasan NA, Strong M, Halpin AL, Rodger RR, Moulton-Meissner H, Crist MB, Schwartz S, Marders J, Daley CL, Salfinger M, Perz JF.

MMWR Morb Mortal Wkly Rep. 2016 Oct 14;65(40):1117-1118. doi: 10.15585/mmwr.mm6540a6.

21.

Phylogenetic Diversity of Vibrio cholerae Associated with Endemic Cholera in Mexico from 1991 to 2008.

Choi SY, Rashed SM, Hasan NA, Alam M, Islam T, Sadique A, Johura FT, Eppinger M, Ravel J, Huq A, Cravioto A, Colwell RR.

MBio. 2016 Mar 15;7(2):e02160. doi: 10.1128/mBio.02160-15.

22.

Cross-talk among flesh-eating Aeromonas hydrophila strains in mixed infection leading to necrotizing fasciitis.

Ponnusamy D, Kozlova EV, Sha J, Erova TE, Azar SR, Fitts EC, Kirtley ML, Tiner BL, Andersson JA, Grim CJ, Isom RP, Hasan NA, Colwell RR, Chopra AK.

Proc Natl Acad Sci U S A. 2016 Jan 19;113(3):722-7. doi: 10.1073/pnas.1523817113. Epub 2016 Jan 5.

23.

GENOTYPE AND DRUG RESISTANCE OF CLINICAL AND ENVIRONMENTAL VIBRIO CHOLERAE NON-O1/NON-O139 IN NORTHEASTERN THAILAND.

Chomvarin C, Jumroenjit W, Tangkanakul W, Hasan NA, Chaicumpar K, Faksri K, Huq A.

Southeast Asian J Trop Med Public Health. 2014 Nov;45(6):1354-64.

PMID:
26466421
24.

Draft Genome Sequence of Strain ATCC 33958, Reported To Be Elizabethkingia miricola.

Matyi SA, Hoyt PR, Ayoubi-Canaan P, Hasan NA, Gustafson JE.

Genome Announc. 2015 Jul 23;3(4). pii: e00828-15. doi: 10.1128/genomeA.00828-15.

25.

Draft Genome Sequence of Mycobacterium chelonae Type Strain ATCC 35752.

Hasan NA, Davidson RM, de Moura VC, Garcia BJ, Reynolds PR, Epperson LE, Farias-Hesson E, DeGroote MA, Jackson M, Strong M.

Genome Announc. 2015 May 28;3(3). pii: e00536-15. doi: 10.1128/genomeA.00536-15.

26.

Deep-sea hydrothermal vent bacteria related to human pathogenic Vibrio species.

Hasan NA, Grim CJ, Lipp EK, Rivera IN, Chun J, Haley BJ, Taviani E, Choi SY, Hoq M, Munk AC, Brettin TS, Bruce D, Challacombe JF, Detter JC, Han CS, Eisen JA, Huq A, Colwell RR.

Proc Natl Acad Sci U S A. 2015 May 26;112(21):E2813-9. doi: 10.1073/pnas.1503928112. Epub 2015 May 11.

27.

Hybrid Vibrio cholerae El Tor lacking SXT identified as the cause of a cholera outbreak in the Philippines.

Klinzing DC, Choi SY, Hasan NA, Matias RR, Tayag E, Geronimo J, Skowronski E, Rashed SM, Kawashima K, Rosenzweig CN, Gibbons HS, Torres BC, Liles V, Alfon AC, Juan ML, Natividad FF, Cebula TA, Colwell RR.

MBio. 2015 Apr 21;6(2). pii: e00047-15. doi: 10.1128/mBio.00047-15.

28.

Concordance and discordance of sequence survey methods for molecular epidemiology.

Castro-Nallar E, Hasan NA, Cebula TA, Colwell RR, Robison RA, Johnson WE, Crandall KA.

PeerJ. 2015 Feb 17;3:e761. doi: 10.7717/peerj.761. eCollection 2015.

29.

Non-O1/non-O139 Vibrio cholerae carrying multiple virulence factors and V. cholerae O1 in the Chesapeake Bay, Maryland.

Ceccarelli D, Chen A, Hasan NA, Rashed SM, Huq A, Colwell RR.

Appl Environ Microbiol. 2015 Mar;81(6):1909-18. doi: 10.1128/AEM.03540-14. Epub 2015 Jan 2.

30.

Nontoxigenic Vibrio cholerae non-O1/O139 isolate from a case of human gastroenteritis in the U.S. Gulf Coast.

Hasan NA, Rezayat T, Blatz PJ, Choi SY, Griffitt KJ, Rashed SM, Huq A, Conger NG, Colwell RR, Grimes DJ.

J Clin Microbiol. 2015 Jan;53(1):9-14. doi: 10.1128/JCM.02187-14. Epub 2014 Oct 22.

31.

A young child with bilateral diaphragmatic palsy after bilateral bidirectional Glenn shunt.

Shamsuddin AK, Biswas SK, Rahman MZ, Biswas S, Hasan NA, Sharifuzzaman M.

Mymensingh Med J. 2014 Jul;23(3):595-8.

PMID:
25178619
32.

Longitudinal analysis of microbial interaction between humans and the indoor environment.

Lax S, Smith DP, Hampton-Marcell J, Owens SM, Handley KM, Scott NM, Gibbons SM, Larsen P, Shogan BD, Weiss S, Metcalf JL, Ursell LK, Vázquez-Baeza Y, Van Treuren W, Hasan NA, Gibson MK, Colwell R, Dantas G, Knight R, Gilbert JA.

Science. 2014 Aug 29;345(6200):1048-52. doi: 10.1126/science.1254529.

33.

Genome sequencing of Mycobacterium abscessus isolates from patients in the united states and comparisons to globally diverse clinical strains.

Davidson RM, Hasan NA, Reynolds PR, Totten S, Garcia B, Levin A, Ramamoorthy P, Heifets L, Daley CL, Strong M.

J Clin Microbiol. 2014 Oct;52(10):3573-82. doi: 10.1128/JCM.01144-14. Epub 2014 Jul 23.

34.

Occurrence in Mexico, 1998-2008, of Vibrio cholerae CTX+ El Tor carrying an additional truncated CTX prophage.

Alam M, Rashed SM, Mannan SB, Islam T, Lizarraga-Partida ML, Delgado G, Morales-Espinosa R, Mendez JL, Navarro A, Watanabe H, Ohnishi M, Hasan NA, Huq A, Sack RB, Colwell RR, Cravioto A.

Proc Natl Acad Sci U S A. 2014 Jul 8;111(27):9917-22. doi: 10.1073/pnas.1323408111. Epub 2014 Jun 23.

35.

Microbial community profiling of human saliva using shotgun metagenomic sequencing.

Hasan NA, Young BA, Minard-Smith AT, Saeed K, Li H, Heizer EM, McMillan NJ, Isom R, Abdullah AS, Bornman DM, Faith SA, Choi SY, Dickens ML, Cebula TA, Colwell RR.

PLoS One. 2014 May 20;9(5):e97699. doi: 10.1371/journal.pone.0097699. eCollection 2014. Erratum in: PLoS One. 2014;9(8):e106124.

36.

How community ecology can improve our understanding of cholera dynamics.

Constantin de Magny G, Hasan NA, Roche B.

Front Microbiol. 2014 Apr 2;5:137. doi: 10.3389/fmicb.2014.00137. eCollection 2014.

37.

Genomic and phenotypic characterization of Vibrio cholerae non-O1 isolates from a US Gulf Coast cholera outbreak.

Haley BJ, Choi SY, Grim CJ, Onifade TJ, Cinar HN, Tall BD, Taviani E, Hasan NA, Abdullah AH, Carter L, Sahu SN, Kothary MH, Chen A, Baker R, Hutchinson R, Blackmore C, Cebula TA, Huq A, Colwell RR.

PLoS One. 2014 Apr 3;9(4):e86264. doi: 10.1371/journal.pone.0086264. eCollection 2014.

38.

High-level relatedness among Mycobacterium abscessus subsp. massiliense strains from widely separated outbreaks.

Tettelin H, Davidson RM, Agrawal S, Aitken ML, Shallom S, Hasan NA, Strong M, de Moura VC, De Groote MA, Duarte RS, Hine E, Parankush S, Su Q, Daugherty SC, Fraser CM, Brown-Elliott BA, Wallace RJ Jr, Holland SM, Sampaio EP, Olivier KN, Jackson M, Zelazny AM.

Emerg Infect Dis. 2014 Mar;20(3):364-71. doi: 10.3201/eid2003.131106.

39.

Distribution and dynamics of epidemic and pandemic Vibrio parahaemolyticus virulence factors.

Ceccarelli D, Hasan NA, Huq A, Colwell RR.

Front Cell Infect Microbiol. 2013 Dec 11;3:97. doi: 10.3389/fcimb.2013.00097. eCollection 2013. Review.

40.

Host genome polymorphisms and tuberculosis infection: What we have to say?

Khalilullah SA, Harapan H, Hasan NA, Winardi W, Ichsan I, Mulyadi M.

Egypt J Chest Dis Tuberc. 2014 Jan;63(1):173-185. Epub 2013 Dec 17.

41.

Genome Sequences of Clinical Vibrio cholerae Isolates from an Oyster-Borne Cholera Outbreak in Florida.

Haley BJ, Choi SY, Hasan NA, Abdullah AS, Cebula TA, Huq A, Colwell RR.

Genome Announc. 2013 Nov 21;1(6). pii: e00966-13. doi: 10.1128/genomeA.00966-13.

42.

Phylogenomics of Brazilian epidemic isolates of Mycobacterium abscessus subsp. bolletii reveals relationships of global outbreak strains.

Davidson RM, Hasan NA, de Moura VC, Duarte RS, Jackson M, Strong M.

Infect Genet Evol. 2013 Dec;20:292-7. doi: 10.1016/j.meegid.2013.09.012. Epub 2013 Sep 18.

43.

Vibrio cholerae O1 El Tor and O139 Bengal strains carrying ctxB(ET), Bangladesh.

Rashed SM, Iqbal A, Mannan SB, Islam T, Rashid MU, Johura FT, Watanabe H, Hasan NA, Huq A, Stine OC, Sack RB, Colwell RR, Alam M.

Emerg Infect Dis. 2013 Oct;19(10):1713-5. doi: 10.3201/eid1910.130626. No abstract available.

44.

The roles of microRNAs on tuberculosis infection: meaning or myth?

Harapan H, Fitra F, Ichsan I, Mulyadi M, Miotto P, Hasan NA, Calado M, Cirillo DM.

Tuberculosis (Edinb). 2013 Nov;93(6):596-605. doi: 10.1016/j.tube.2013.08.004. Epub 2013 Aug 15. Review.

45.

A new integrative conjugative element detected in Haitian isolates of Vibrio cholerae non-O1/non-O139.

Ceccarelli D, Spagnoletti M, Hasan NA, Lansing S, Huq A, Colwell RR.

Res Microbiol. 2013 Nov;164(9):891-893. doi: 10.1016/j.resmic.2013.08.004. Epub 2013 Aug 28.

46.

Distribution of virulence genes in clinical and environmental Vibrio cholerae strains in Bangladesh.

Hasan NA, Ceccarelli D, Grim CJ, Taviani E, Choi J, Sadique A, Alam M, Siddique AK, Sack RB, Huq A, Colwell RR.

Appl Environ Microbiol. 2013 Sep;79(18):5782-5. doi: 10.1128/AEM.01113-13. Epub 2013 Jul 19.

47.

Evaluation of the Effect of the 47 kDa Protein Isolated from Aged Garlic Extract on Dendritic Cells.

Hasan NA, Zuhair MH, Safari E, Bozorgmehr M, Moazzeni SM.

Iran J Basic Med Sci. 2012 Mar;15(2):745-51.

48.

Drug response and genetic properties of Vibrio cholerae associated with endemic cholera in north-eastern Thailand, 2003-2011.

Chomvarin C, Johura FT, Mannan SB, Jumroenjit W, Kanoktippornchai B, Tangkanakul W, Tantisuwichwong N, Huttayananont S, Watanabe H, Hasan NA, Huq A, Cravioto A, Colwell RR, Alam M.

J Med Microbiol. 2013 Apr;62(Pt 4):599-609. doi: 10.1099/jmm.0.053801-0. Epub 2013 Jan 14.

49.

Vibrio cholerae in an Historically Cholera-Free Country.

Haley BJ, Chen A, Grim CJ, Clark P, Diaz CM, Taviani E, Hasan NA, Sancomb E, Elnemr WM, Islam MA, Huq A, Colwell RR, Benediktsdóttir E.

Environ Microbiol Rep. 2012 Aug 1;4(4):381-389. Epub 2012 Mar 12.

50.

Detection, isolation, and identification of Vibrio cholerae from the environment.

Huq A, Haley BJ, Taviani E, Chen A, Hasan NA, Colwell RR.

Curr Protoc Microbiol. 2012 Aug;Chapter 6:Unit6A.5. doi: 10.1002/9780471729259.mc06a05s26.

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