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Items: 1 to 50 of 93

1.

T6SS and ExoA of flesh-eating Aeromonas hydrophila in peritonitis and necrotizing fasciitis during mono- and polymicrobial infections.

Fernández-Bravo A, Kilgore PB, Andersson JA, Blears E, Figueras MJ, Hasan NA, Colwell RR, Sha J, Chopra AK.

Proc Natl Acad Sci U S A. 2019 Nov 26;116(48):24084-24092. doi: 10.1073/pnas.1914395116. Epub 2019 Nov 11.

PMID:
31712444
2.

Nontuberculous Mycobacteria Show Differential Infectivity and Use Phospholipids to Antagonize LL-37.

Honda JR, Hess T, Carlson R, Kandasamy P, Nieto Ramirez LM, Norton GJ, Virdi R, Islam MN, Mehaffy C, Hasan NA, Epperson LE, Hesser D, Alper S, Strong M, Flores SC, Voelker DR, Dobos KM, Chan ED.

Am J Respir Cell Mol Biol. 2019 Sep 23. doi: 10.1165/rcmb.2018-0278OC. [Epub ahead of print]

PMID:
31545652
3.

Prosthetic joint infections present diverse and unique microbial communities using combined whole-genome shotgun sequencing and culturing methods.

Weaver AA, Hasan NA, Klaassen M, Karathia H, Colwell RR, Shrout JD.

J Med Microbiol. 2019 Oct;68(10):1507-1516. doi: 10.1099/jmm.0.001068.

PMID:
31460858
4.

Oral Beta-Lactamase Protects the Canine Gut Microbiome from Oral Amoxicillin-Mediated Damage.

Connelly S, Fanelli B, Hasan NA, Colwell RR, Kaleko M.

Microorganisms. 2019 May 27;7(5). pii: E150. doi: 10.3390/microorganisms7050150.

5.

Cytokine profile and nitric oxide levels in macrophages exposed to Leishmania infantum FML.

Reza S, Hasan NA, Maryam NF, Fahimeh B, Ghahremani A, GholamReza H, Amin GM.

Exp Parasitol. 2019 Aug;203:1-7. doi: 10.1016/j.exppara.2019.05.004. Epub 2019 May 22.

PMID:
31128104
6.

Correction to: Comprehensive benchmarking and ensemble approaches for metagenomic classifiers.

McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S, Tighe S, Hasan NA, Subramanian P, Moffat K, Levy S, Lonardi S, Greenfield N, Colwell RR, Rosen GL, Mason CE.

Genome Biol. 2019 Apr 5;20(1):72. doi: 10.1186/s13059-019-1687-2.

7.

Metagenomic Profiling of Microbial Pathogens in the Little Bighorn River, Montana.

Hamner S, Brown BL, Hasan NA, Franklin MJ, Doyle J, Eggers MJ, Colwell RR, Ford TE.

Int J Environ Res Public Health. 2019 Mar 27;16(7). pii: E1097. doi: 10.3390/ijerph16071097.

8.

Variation among human, veterinary and environmental Mycobacterium chelonae-abscessus complex isolates observed using core genome phylogenomic analysis, targeted gene comparison, and anti-microbial susceptibility patterns.

Fogelson SB, Camus AC, Lorenz WW, Vasireddy R, Vasireddy S, Smith T, Brown-Elliott BA, Wallace RJ Jr, Hasan NA, Reischl U, Sanchez S.

PLoS One. 2019 Mar 25;14(3):e0214274. doi: 10.1371/journal.pone.0214274. eCollection 2019.

9.

Oral Metallo-Beta-Lactamase Protects the Gut Microbiome From Carbapenem-Mediated Damage and Reduces Propagation of Antibiotic Resistance in Pigs.

Connelly S, Fanelli B, Hasan NA, Colwell RR, Kaleko M.

Front Microbiol. 2019 Feb 5;10:101. doi: 10.3389/fmicb.2019.00101. eCollection 2019.

10.

Genomic Analysis of Cardiac Surgery-Associated Mycobacterium chimaera Infections, United States.

Hasan NA, Epperson LE, Lawsin A, Rodger RR, Perkins KM, Halpin AL, Perry KA, Moulton-Meissner H, Diekema DJ, Crist MB, Perz JF, Salfinger M, Daley CL, Strong M.

Emerg Infect Dis. 2019 Mar;25(3):559-563. doi: 10.3201/eid2503.181282.

11.

Interrelation of the Circulating and Tissue MicroRNA-21 with Tissue PDCD4 Expression and the Invasiveness of Iraqi Female Breast Tumors.

Abdulhussain MM, Hasan NA, Hussain AG.

Indian J Clin Biochem. 2019 Jan;34(1):26-38. doi: 10.1007/s12291-017-0710-1. Epub 2017 Nov 14.

PMID:
30728670
12.

Metagenome sequencing-based strain-level and functional characterization of supragingival microbiome associated with dental caries in children.

Al-Hebshi NN, Baraniya D, Chen T, Hill J, Puri S, Tellez M, Hasan NA, Colwell RR, Ismail A.

J Oral Microbiol. 2018 Dec 28;11(1):1557986. doi: 10.1080/20002297.2018.1557986. eCollection 2019.

13.

Evaluation of a Novel MALDI Biotyper Algorithm to Distinguish Mycobacterium intracellulare From Mycobacterium chimaera.

Epperson LE, Timke M, Hasan NA, Godo P, Durbin D, Helstrom NK, Shi G, Kostrzewa M, Strong M, Salfinger M.

Front Microbiol. 2018 Dec 18;9:3140. doi: 10.3389/fmicb.2018.03140. eCollection 2018.

14.

Characterization of the Microbiome at the World's Largest Potable Water Reuse Facility.

Stamps BW, Leddy MB, Plumlee MH, Hasan NA, Colwell RR, Spear JR.

Front Microbiol. 2018 Oct 26;9:2435. doi: 10.3389/fmicb.2018.02435. eCollection 2018.

15.

Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018.

Meisel JS, Nasko DJ, Brubach B, Cepeda-Espinoza V, Chopyk J, Corrada-Bravo H, Fedarko M, Ghurye J, Javkar K, Olson ND, Shah N, Allard SM, Bazinet AL, Bergman NH, Brown A, Caporaso JG, Conlan S, DiRuggiero J, Forry SP, Hasan NA, Kralj J, Luethy PM, Milton DK, Ondov BD, Preheim S, Ratnayake S, Rogers SM, Rosovitz MJ, Sakowski EG, Schliebs NO, Sommer DD, Ternus KL, Uritskiy G, Zhang SX, Pop M, Treangen TJ.

Microbiome. 2018 Nov 5;6(1):197. doi: 10.1186/s40168-018-0582-5.

16.

A Metagenomic Approach to Evaluating Surface Water Quality in Haiti.

Roy MA, Arnaud JM, Jasmin PM, Hamner S, Hasan NA, Colwell RR, Ford TE.

Int J Environ Res Public Health. 2018 Oct 10;15(10). pii: E2211. doi: 10.3390/ijerph15102211.

17.

Comparison of Infant Gut and Skin Microbiota, Resistome and Virulome Between Neonatal Intensive Care Unit (NICU) Environments.

Hourigan SK, Subramanian P, Hasan NA, Ta A, Klein E, Chettout N, Huddleston K, Deopujari V, Levy S, Baveja R, Clemency NC, Baker RL, Niederhuber JE, Colwell RR.

Front Microbiol. 2018 Jun 25;9:1361. doi: 10.3389/fmicb.2018.01361. eCollection 2018.

18.

Distinct consequences of amoxicillin and ertapenem exposure in the porcine gut microbiome.

Connelly S, Subramanian P, Hasan NA, Colwell RR, Kaleko M.

Anaerobe. 2018 Oct;53:82-93. doi: 10.1016/j.anaerobe.2018.04.012. Epub 2018 Apr 22.

PMID:
29689301
19.

Biofilms Comprise a Component of the Annual Cycle of Vibrio cholerae in the Bay of Bengal Estuary.

Sultana M, Nusrin S, Hasan NA, Sadique A, Ahmed KU, Islam A, Hossain A, Longini I, Nizam A, Huq A, Siddique AK, Sack DA, Sack RB, Colwell RR, Alam M.

MBio. 2018 Apr 17;9(2). pii: e00483-18. doi: 10.1128/mBio.00483-18.

20.

Microbial diversity changes with rhizosphere and hydrocarbons in contrasting soils.

Khan MAI, Biswas B, Smith E, Mahmud SA, Hasan NA, Khan MAW, Naidu R, Megharaj M.

Ecotoxicol Environ Saf. 2018 Jul 30;156:434-442. doi: 10.1016/j.ecoenv.2018.03.006.

PMID:
29604472
21.

Characterization of Pathogenic Vibrio parahaemolyticus from the Chesapeake Bay, Maryland.

Chen AJ, Hasan NA, Haley BJ, Taviani E, Tarnowski M, Brohawn K, Johnson CN, Colwell RR, Huq A.

Front Microbiol. 2017 Dec 15;8:2460. doi: 10.3389/fmicb.2017.02460. eCollection 2017.

22.

Characterization of Two Cryptic Plasmids Isolated in Haiti from Clinical Vibrio cholerae Non-O1/Non-O139.

Ceccarelli D, Garriss G, Choi SY, Hasan NA, Stepanauskas R, Pop M, Huq A, Colwell RR.

Front Microbiol. 2017 Nov 23;8:2283. doi: 10.3389/fmicb.2017.02283. eCollection 2017.

23.

The microbiomes of blowflies and houseflies as bacterial transmission reservoirs.

Junqueira ACM, Ratan A, Acerbi E, Drautz-Moses DI, Premkrishnan BNV, Costea PI, Linz B, Purbojati RW, Paulo DF, Gaultier NE, Subramanian P, Hasan NA, Colwell RR, Bork P, Azeredo-Espin AML, Bryant DA, Schuster SC.

Sci Rep. 2017 Nov 24;7(1):16324. doi: 10.1038/s41598-017-16353-x.

24.

Comprehensive benchmarking and ensemble approaches for metagenomic classifiers.

McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S, Tighe S, Hasan NA, Subramanian P, Moffat K, Levy S, Lonardi S, Greenfield N, Colwell RR, Rosen GL, Mason CE.

Genome Biol. 2017 Sep 21;18(1):182. doi: 10.1186/s13059-017-1299-7. Erratum in: Genome Biol. 2019 Apr 5;20(1):72.

25.

Complete Genome Sequence of Mycobacterium chimaera SJ42, a Nonoutbreak Strain from an Immunocompromised Patient with Pulmonary Disease.

Hasan NA, Warren RL, Epperson LE, Malecha A, Alexander DC, Turenne CY, MacMillan D, Birol I, Pleasance S, Coope R, Jones SJM, Romney MG, Ng M, Chan T, Rodrigues M, Tang P, Gardy JL, Strong M.

Genome Announc. 2017 Sep 14;5(37). pii: e00963-17. doi: 10.1128/genomeA.00963-17.

26.

Mycobacterium talmoniae sp. nov., a slowly growing mycobacterium isolated from human respiratory samples.

Davidson RM, DeGroote MA, Marola JL, Buss S, Jones V, McNeil MR, Freifeld AG, Elaine Epperson L, Hasan NA, Jackson M, Iwen PC, Salfinger M, Strong M.

Int J Syst Evol Microbiol. 2017 Aug;67(8):2640-2645. doi: 10.1099/ijsem.0.001998. Epub 2017 Aug 15.

PMID:
28809146
27.

Complete Genome Sequence of Mycobacteriumchimaera Strain CDC2015-22-71.

Hasan NA, Lawsin A, Perry KA, Alyanak E, Toney NC, Malecha A, Rowe LA, Batra D, Moulton-Meissner H, Miller JR, Strong M, Laufer Halpin A.

Genome Announc. 2017 Aug 3;5(31). pii: e00693-17. doi: 10.1128/genomeA.00693-17.

28.

Comparative genomic analysis and characterization of incompatibility group FIB plasmid encoded virulence factors of Salmonella enterica isolated from food sources.

Khajanchi BK, Hasan NA, Choi SY, Han J, Zhao S, Colwell RR, Cerniglia CE, Foley SL.

BMC Genomics. 2017 Aug 2;18(1):570. doi: 10.1186/s12864-017-3954-5.

29.

Genotypic and phenotypic characterization of multidrug resistant Salmonella Typhimurium and Salmonella Kentucky strains recovered from chicken carcasses.

Tasmin R, Hasan NA, Grim CJ, Grant A, Choi SY, Alam MS, Bell R, Cavanaugh C, Balan KV, Babu US, Parveen S.

PLoS One. 2017 May 8;12(5):e0176938. doi: 10.1371/journal.pone.0176938. eCollection 2017.

30.

Complete Genome Sequence of Mycobacterium avium subsp. hominissuis Strain H87 Isolated from an Indoor Water Sample.

Zhao X, Epperson LE, Hasan NA, Honda JR, Chan ED, Strong M, Walter ND, Davidson RM.

Genome Announc. 2017 Apr 20;5(16). pii: e00189-17. doi: 10.1128/genomeA.00189-17.

31.

Vibrio cholerae O1 with Reduced Susceptibility to Ciprofloxacin and Azithromycin Isolated from a Rural Coastal Area of Bangladesh.

Rashed SM, Hasan NA, Alam M, Sadique A, Sultana M, Hoq MM, Sack RB, Colwell RR, Huq A.

Front Microbiol. 2017 Feb 21;8:252. doi: 10.3389/fmicb.2017.00252. eCollection 2017.

32.

SYN-004 (ribaxamase), an oral beta-lactamase, mitigates antibiotic-mediated dysbiosis in a porcine gut microbiome model.

Connelly S, Bristol JA, Hubert S, Subramanian P, Hasan NA, Colwell RR, Kaleko M.

J Appl Microbiol. 2017 Jul;123(1):66-79. doi: 10.1111/jam.13432. Epub 2017 May 23.

PMID:
28245091
33.

Correction: Environmental Nontuberculous Mycobacteria in the Hawaiian Islands.

Honda JR, Hasan NA, Davidson RM, Williams MD, Epperson LE, Reynolds PR, Smith T, Iakhiaeva E, Bankowski MJ, Wallace RJ Jr, Chan ED, Falkinham JO 3rd, Strong M.

PLoS Negl Trop Dis. 2016 Dec 2;10(12):e0005200. doi: 10.1371/journal.pntd.0005200. eCollection 2016 Dec.

34.

Complete Genome Sequence of Mycobacterium chimaera Strain AH16.

Hasan NA, Honda JR, Davidson RM, Epperson LE, Bankowski MJ, Chan ED, Strong M.

Genome Announc. 2016 Nov 23;4(6). pii: e01276-16. doi: 10.1128/genomeA.01276-16.

35.

Environmental Nontuberculous Mycobacteria in the Hawaiian Islands.

Honda JR, Hasan NA, Davidson RM, Williams MD, Epperson LE, Reynolds PR, Smith T, Iakhiaeva E, Bankowski MJ, Wallace RJ Jr, Chan ED, Falkinham JO 3rd, Strong M.

PLoS Negl Trop Dis. 2016 Oct 25;10(10):e0005068. doi: 10.1371/journal.pntd.0005068. eCollection 2016 Oct. Erratum in: PLoS Negl Trop Dis. 2016 Dec 2;10 (12 ):e0005200.

36.

Notes from the Field: Mycobacterium chimaera Contamination of Heater-Cooler Devices Used in Cardiac Surgery - United States.

Perkins KM, Lawsin A, Hasan NA, Strong M, Halpin AL, Rodger RR, Moulton-Meissner H, Crist MB, Schwartz S, Marders J, Daley CL, Salfinger M, Perz JF.

MMWR Morb Mortal Wkly Rep. 2016 Oct 14;65(40):1117-1118. doi: 10.15585/mmwr.mm6540a6.

37.

Phylogenetic Diversity of Vibrio cholerae Associated with Endemic Cholera in Mexico from 1991 to 2008.

Choi SY, Rashed SM, Hasan NA, Alam M, Islam T, Sadique A, Johura FT, Eppinger M, Ravel J, Huq A, Cravioto A, Colwell RR.

MBio. 2016 Mar 15;7(2):e02160. doi: 10.1128/mBio.02160-15.

38.

Cross-talk among flesh-eating Aeromonas hydrophila strains in mixed infection leading to necrotizing fasciitis.

Ponnusamy D, Kozlova EV, Sha J, Erova TE, Azar SR, Fitts EC, Kirtley ML, Tiner BL, Andersson JA, Grim CJ, Isom RP, Hasan NA, Colwell RR, Chopra AK.

Proc Natl Acad Sci U S A. 2016 Jan 19;113(3):722-7. doi: 10.1073/pnas.1523817113. Epub 2016 Jan 5.

39.

GENOTYPE AND DRUG RESISTANCE OF CLINICAL AND ENVIRONMENTAL VIBRIO CHOLERAE NON-O1/NON-O139 IN NORTHEASTERN THAILAND.

Chomvarin C, Jumroenjit W, Tangkanakul W, Hasan NA, Chaicumpar K, Faksri K, Huq A.

Southeast Asian J Trop Med Public Health. 2014 Nov;45(6):1354-64.

PMID:
26466421
40.

Draft Genome Sequence of Strain ATCC 33958, Reported To Be Elizabethkingia miricola.

Matyi SA, Hoyt PR, Ayoubi-Canaan P, Hasan NA, Gustafson JE.

Genome Announc. 2015 Jul 23;3(4). pii: e00828-15. doi: 10.1128/genomeA.00828-15.

41.

Draft Genome Sequence of Mycobacterium chelonae Type Strain ATCC 35752.

Hasan NA, Davidson RM, de Moura VC, Garcia BJ, Reynolds PR, Epperson LE, Farias-Hesson E, DeGroote MA, Jackson M, Strong M.

Genome Announc. 2015 May 28;3(3). pii: e00536-15. doi: 10.1128/genomeA.00536-15.

42.

Deep-sea hydrothermal vent bacteria related to human pathogenic Vibrio species.

Hasan NA, Grim CJ, Lipp EK, Rivera IN, Chun J, Haley BJ, Taviani E, Choi SY, Hoq M, Munk AC, Brettin TS, Bruce D, Challacombe JF, Detter JC, Han CS, Eisen JA, Huq A, Colwell RR.

Proc Natl Acad Sci U S A. 2015 May 26;112(21):E2813-9. doi: 10.1073/pnas.1503928112. Epub 2015 May 11.

43.

Hybrid Vibrio cholerae El Tor lacking SXT identified as the cause of a cholera outbreak in the Philippines.

Klinzing DC, Choi SY, Hasan NA, Matias RR, Tayag E, Geronimo J, Skowronski E, Rashed SM, Kawashima K, Rosenzweig CN, Gibbons HS, Torres BC, Liles V, Alfon AC, Juan ML, Natividad FF, Cebula TA, Colwell RR.

MBio. 2015 Apr 21;6(2). pii: e00047-15. doi: 10.1128/mBio.00047-15.

44.

Concordance and discordance of sequence survey methods for molecular epidemiology.

Castro-Nallar E, Hasan NA, Cebula TA, Colwell RR, Robison RA, Johnson WE, Crandall KA.

PeerJ. 2015 Feb 17;3:e761. doi: 10.7717/peerj.761. eCollection 2015.

45.

Non-O1/non-O139 Vibrio cholerae carrying multiple virulence factors and V. cholerae O1 in the Chesapeake Bay, Maryland.

Ceccarelli D, Chen A, Hasan NA, Rashed SM, Huq A, Colwell RR.

Appl Environ Microbiol. 2015 Mar;81(6):1909-18. doi: 10.1128/AEM.03540-14. Epub 2015 Jan 2.

46.

Nontoxigenic Vibrio cholerae non-O1/O139 isolate from a case of human gastroenteritis in the U.S. Gulf Coast.

Hasan NA, Rezayat T, Blatz PJ, Choi SY, Griffitt KJ, Rashed SM, Huq A, Conger NG, Colwell RR, Grimes DJ.

J Clin Microbiol. 2015 Jan;53(1):9-14. doi: 10.1128/JCM.02187-14. Epub 2014 Oct 22.

47.

A young child with bilateral diaphragmatic palsy after bilateral bidirectional Glenn shunt.

Shamsuddin AK, Biswas SK, Rahman MZ, Biswas S, Hasan NA, Sharifuzzaman M.

Mymensingh Med J. 2014 Jul;23(3):595-8.

PMID:
25178619
48.

Longitudinal analysis of microbial interaction between humans and the indoor environment.

Lax S, Smith DP, Hampton-Marcell J, Owens SM, Handley KM, Scott NM, Gibbons SM, Larsen P, Shogan BD, Weiss S, Metcalf JL, Ursell LK, Vázquez-Baeza Y, Van Treuren W, Hasan NA, Gibson MK, Colwell R, Dantas G, Knight R, Gilbert JA.

Science. 2014 Aug 29;345(6200):1048-52. doi: 10.1126/science.1254529.

49.

Genome sequencing of Mycobacterium abscessus isolates from patients in the united states and comparisons to globally diverse clinical strains.

Davidson RM, Hasan NA, Reynolds PR, Totten S, Garcia B, Levin A, Ramamoorthy P, Heifets L, Daley CL, Strong M.

J Clin Microbiol. 2014 Oct;52(10):3573-82. doi: 10.1128/JCM.01144-14. Epub 2014 Jul 23.

50.

Occurrence in Mexico, 1998-2008, of Vibrio cholerae CTX+ El Tor carrying an additional truncated CTX prophage.

Alam M, Rashed SM, Mannan SB, Islam T, Lizarraga-Partida ML, Delgado G, Morales-Espinosa R, Mendez JL, Navarro A, Watanabe H, Ohnishi M, Hasan NA, Huq A, Sack RB, Colwell RR, Cravioto A.

Proc Natl Acad Sci U S A. 2014 Jul 8;111(27):9917-22. doi: 10.1073/pnas.1323408111. Epub 2014 Jun 23.

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